mRNA_Ecto-sp6_S_contig102.833.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.833.1
Unique NamemRNA_Ecto-sp6_S_contig102.833.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.833.1 vs. uniprot
Match: D7FZ82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ82_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 7.440e-104
Identity = 223/317 (70.35%), Postives = 241/317 (76.03%), Query Frame = 1 
Query:    1 MTTCSNTDSFRLEADIDYIYDDYGEVESPDGCYEEPVYDPVESGEAASEFYSNGIRSDYEYFFKMYVYQDAELAEVWGIATYVEGITNTRCIDYYLNEYTTLHPTEVIYWACEDDDGGFSYKTLSATISTVCGCDTPAPTAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAAASAPAXXXXXXXXXXXXXXXXXXDGLTLAPRTLTYTFSPTRAPEVASSPPPVSTTSDEAAPAGEVAXXXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGSTGSTPPAASXXXXXXXXXXXXXXXEAIE 951
            MT+CS TDSFRLEADIDY+++DYGEV SPDGCY+E +  PVESGEA S FYS+G  SDYEYFF+ Y + D E   VW IATY++   NTRCIDY LN+YTTLHPTEV+YWACEDDDGG  Y   SATIST+CGC+TPAPTAAPTXXXXXXXXXXXXXXXXX                                       +GL    RTL  T SPTRAPEV S+PPPVSTTSDEAAPAGEVA XXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGS G+TPPAAS XXXXXXXXXXXXXXEAIE
Sbjct:    1 MTSCSYTDSFRLEADIDYVFEDYGEVSSPDGCYQESINSPVESGEAVSAFYSDGGLSDYEYFFRTYEFDDDE---VWVIATYLDDTFNTRCIDYDLNDYTTLHPTEVLYWACEDDDGG--YTDFSATISTICGCNTPAPTAAPTXXXXXXXXXXXXXXXXXGPTP-----------------------------------NGLXXXXRTLMDTSSPTRAPEVVSTPPPVSTTSDEAAPAGEVAGXXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGSMGNTPPAASEXXXXXXXXXXXXXXEAIE 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ82_ECTSI7.440e-10470.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:85450..87945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_002750.1
Cds size954
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348736.0066304-CDS-Ecto-sp6_S_contig102:85449..856971682348736.0066304-CDS-Ecto-sp6_S_contig102:85449..85697Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 85450..85697 -
1682348736.0162702-CDS-Ecto-sp6_S_contig102:86435..869161682348736.0162702-CDS-Ecto-sp6_S_contig102:86435..86916Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 86436..86916 -
1682348736.0248291-CDS-Ecto-sp6_S_contig102:87720..879451682348736.0248291-CDS-Ecto-sp6_S_contig102:87720..87945Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 87721..87945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.833.1prot_Ecto-sp6_S_contig102.833.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 85450..87945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.833.1

>prot_Ecto-sp6_S_contig102.833.1 ID=prot_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=318bp
MTTCSNTDSFRLEADIDYIYDDYGEVESPDGCYEEPVYDPVESGEAASEF
YSNGIRSDYEYFFKMYVYQDAELAEVWGIATYVEGITNTRCIDYYLNEYT
TLHPTEVIYWACEDDDGGFSYKTLSATISTVCGCDTPAPTAAPTTPPPTP
GPATPDPSAARATPDPTAAPTTPLPAAASAPAPSAVSSTPAPAAAPGPTP
DGLTLAPRTLTYTFSPTRAPEVASSPPPVSTTSDEAAPAGEVAGGVVAGV
VVVVAVVLAALFKTGRLKIKRTGKQRKPSHDDVASGSGSTGSTPPAASEP
PVHHQYPVAYQYPEAIE*
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mRNA from alignment at Ecto-sp6_S_contig102:85450..87945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.833.1 ID=mRNA_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2496bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:85450..87945- (Ectocarpus species6 EcLAC_371)
ATGACGACGTGCTCGAATACGGATTCTTTTCGTCTCGAAGCCGACATCGA
TTACATTTACGACGACTACGGCGAGGTCGAGAGCCCGGACGGTTGCTATG
AAGAGCCTGTCTACGACCCCGTAGAAAGTGGCGAAGCTGCGAGTGAGTTT
TATTCAAACGGTATTCGCTCCGATTACGAATATTTCTTCAAGATGTACGT
GTACCAAGATGCTGAGCTGGCTGAGGTGAGTGAGGTACCAGTACTGACTG
AATCTGTACATGCCCGCAGGTCGATGGGTGGGTGTCATTCACAGTGGTGT
GGGACGTGTTTCTAGAGGTATCTGGTAGAGACTTGTACCCTGTTTCCTTG
CACCTGACTTGGGGATCGTGGGTAGTTACCCATATGGCAATAGGATGGGA
GCGATCCTGCTTGTCGCTGTTGACTCGTTTTCGCCCTGTGAAAAAGCACT
TGGACCGGTTGATATCGGAGTGCCCGCCGGTGGTACTCGGTGGGCAGCTC
TGACTATTGTTTGTGTTGGACCTTTCTTTTGTCGAGAGGGGCATCTAATC
TAATGTGCAGGGATACTTCTTGTTCTTGGTGGAGATAGCGGAAAATATGT
AGGGGTACCACTGGCAATCAAACAGCCCTAGATCTGAGTCTAGAATTCCA
GCCCGAAGAATCTAATATTTCGCCAGGTACTAACTCTTAGCCGAAAACAT
TTTTTGGTTGTACTACCGCCTGACCGCATTCAACTGCTACGCTGTGCATC
AACGATGATGAAGAAATTAGGGCAGCTTTTGCAGCAAGTGTTGTTCGGTT
GTACAATCATATACTGTGTCAGTACGATACGATAAATTTGGAGTATGTAA
GTTCCATTTGCCCACGAGTGCGTGATTGGCTATCCATGTGTATTGAATGC
TTCTTTGCTTACGATAGGCGTGGTGAAGAGCTACAGTGCGTCAAGGCGAT
GTGACAGCTATATTGATTCCCTTTTTCTCTTCCTCATGCAGACGCTCTCA
ATTTCGCACGGCCTCTTGCTTGTCTCCAGGTGTGGGGAATCGCCACTTAT
GTGGAAGGTATAACCAATACGAGGTGTATAGACTACTACCTGAACGAATA
TACTACGCTGCACCCCACGGAAGTAATATACTGGGCTTGCGAAGACGATG
ATGGCGGGTTTTCATATAAAACCTTATCCGCCACAATATCAACCGTCTGC
GGCTGCGACACTCCGGCCCCTACTGCAGCCCCTACCACTCCGCCCCCTAC
TCCGGGCCCTGCCACTCCGGACCCTTCTGCAGCCCGTGCCACTCCGGACC
CCACTGCTGCCCCTACCACTCCGCTCCCTGCTGCCGCTTCCGCTCCTGCT
CCTTCGGCTGTCTCTTCCACTCCTGCTCCCGCCGCTGCCCCCGGGCCTAC
CCCTGATGGTTTGACGCTGGCACCGCGTACTCTTACGTATACTTTTTCTC
CCACGCGTGCCCCTGAAGTTGCATCTTCCCCGCCTCCAGTGAGCACCACC
TCGGATGAAGGTAGGCACGGGTTGGGGATGAAGATGTAGACTTAACGACG
TCGCGATATAAGCGATAGTGTATTTTGTCGACGGGTCCGTCTTGGAAGAC
CTTCGAATGTTTGTTGTTTGAATTCATCCATTGGTTTGAGCGCTGGTTCG
CTTGTTCCCCTTACTATCTTCTTCTGCCTTCTTTTCCTAGAATGTGACGA
ATCTACCATCGGTCGCACAATATCGTGTTCTTGTTTATATTTTGATCTTC
TTCGTAAACTCGAGTCTAGGCCCATGTGGTATTGTTCGGAAAAGGGCCTC
GTGCACTCTCTTCTTTTGTCGATTTCGCTATTCCCTATTGTTTGTGGTTC
GTGCAACAAATACAAAGGTCCATGCAAAACCCCGAAATTCGTGACGTATG
GCGTTCAGAGAAACGAGACGCATCTAAAATTTCTCGGCACACGACAACAT
GTGGAACCGAAATGCACCTCCCCGCTAATGTTTTTTCTTTTCTCTCCCGT
TGCGCCCAAAAAGAACGAAGATCTCGTGCAAGTCGCAAGCACCACAGCGG
AGCACAGCTGTAGGGGCCACACACGTTTCTGCCTTTTGTGTTACAATGTT
TGCAGGAATTTGCAACCAATTCACACAGGCTCTCGTTGTGTGGTTGACAA
CAACGCGACGTAGAAGCGGCACGGGGAGATACACACCCGACCTCTAGCCT
TCGTTGTCGAATTATTTGATCGCGATTTATCTGTCCCGGCGAAACCAGCA
GCTCCAGCGGGAGAAGTGGCTGGAGGGGTGGTGGCGGGCGTGGTAGTGGT
CGTGGCCGTCGTCCTTGCTGCCCTGTTCAAGACTGGTCGCCTGAAGATCA
AGCGAACCGGGAAACAACGGAAGCCTTCTCATGACGATGTCGCTAGCGGC
TCTGGGTCCACGGGTAGCACGCCGCCCGCGGCTTCTGAGCCCCCCGTTCA
TCATCAGTACCCCGTTGCCTATCAGTATCCAGAGGCCATTGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:85450..87945-

>mRNA_Ecto-sp6_S_contig102.833.1 ID=mRNA_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:85450..87945- (Ectocarpus species6 EcLAC_371)
ATGACGACGTGCTCGAATACGGATTCTTTTCGTCTCGAAGCCGACATCGA
TTACATTTACGACGACTACGGCGAGGTCGAGAGCCCGGACGGTTGCTATG
AAGAGCCTGTCTACGACCCCGTAGAAAGTGGCGAAGCTGCGAGTGAGTTT
TATTCAAACGGTATTCGCTCCGATTACGAATATTTCTTCAAGATGTACGT
GTACCAAGATGCTGAGCTGGCTGAGGTGTGGGGAATCGCCACTTATGTGG
AAGGTATAACCAATACGAGGTGTATAGACTACTACCTGAACGAATATACT
ACGCTGCACCCCACGGAAGTAATATACTGGGCTTGCGAAGACGATGATGG
CGGGTTTTCATATAAAACCTTATCCGCCACAATATCAACCGTCTGCGGCT
GCGACACTCCGGCCCCTACTGCAGCCCCTACCACTCCGCCCCCTACTCCG
GGCCCTGCCACTCCGGACCCTTCTGCAGCCCGTGCCACTCCGGACCCCAC
TGCTGCCCCTACCACTCCGCTCCCTGCTGCCGCTTCCGCTCCTGCTCCTT
CGGCTGTCTCTTCCACTCCTGCTCCCGCCGCTGCCCCCGGGCCTACCCCT
GATGGTTTGACGCTGGCACCGCGTACTCTTACGTATACTTTTTCTCCCAC
GCGTGCCCCTGAAGTTGCATCTTCCCCGCCTCCAGTGAGCACCACCTCGG
ATGAAGCAGCTCCAGCGGGAGAAGTGGCTGGAGGGGTGGTGGCGGGCGTG
GTAGTGGTCGTGGCCGTCGTCCTTGCTGCCCTGTTCAAGACTGGTCGCCT
GAAGATCAAGCGAACCGGGAAACAACGGAAGCCTTCTCATGACGATGTCG
CTAGCGGCTCTGGGTCCACGGGTAGCACGCCGCCCGCGGCTTCTGAGCCC
CCCGTTCATCATCAGTACCCCGTTGCCTATCAGTATCCAGAGGCCATTGA
GTAG
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