mRNA_Ecto-sp6_S_contig102.827.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 771 bits (1992), Expect = 9.880e-279 Identity = 432/459 (94.12%), Postives = 437/459 (95.21%), Query Frame = 2 Query: 50 VWAVHVPEQGFVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFVRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTKPERS 1426
V VHVPEQ FVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFV+SLEDAGIDDQMRKG RPTRK QRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGAS DPLDVDSGASEQS PKGR+KASVKTREAG XXXXXXXXXXXXXXXKVSESESES TTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERN ALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKND NVKAG NKQPA RAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRL R+EGVNASITTIQNDS D+DGNVVKALVGNPMPT KRWLLQLAAVDVCHDDTCCPETKLLKDAVKTH IKA DTETPVASGKP SAK K GKTKP+RS
Sbjct: 18 VGRVHVPEQDFVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFVKSLEDAGIDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXKVSESESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDNNVKAGPSNKQPAGRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRLTRIEGVNASITTIQNDSKDKDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRS 476
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 391 bits (1005), Expect = 1.380e-128 Identity = 256/441 (58.05%), Postives = 284/441 (64.40%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKRE------------AKLLKRKKGEAKSAAVAARKGTPA---------PTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADE---------------------ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVD-VCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASA 1390
V + + D+ RKG RPTRKGQR T P AGA GS VDL TEQRGE+G RKKASKGAS DPLDVDSG SEQ PKG+QKASVKTR+A E S TTH++RSARRK+TPEQ K+LTE+SKSTCPDR+KERN A AAADEVSRKR AKLLKRKK +AKSAAVAARK P P+AA K N +LD CKNDQANRLTASE SFLKKLLAKQ+G ESGD EEDDDESVD L+DAR+EP DLE+ DSQGAGDG+ADE ASLKVMREWRAAL+RLR R+EGVNA+ITTIQNDS D DGN G P +++ +CHDDTCCPETKLLKDAVKTH I+A DTE PVAS KP SA
Sbjct: 72 VACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA--------------------EXXXXSDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARKAPPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXX-NLDSCKNDQANRLTASEKSFLKKLLAKQNGVESGDLEEDDDESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHFRDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGVNAAITTIQNDSKDGDGNTR----GEPHADSQQVAPSACGRGCLCHDDTCCPETKLLKDAVKTHPIEADDTEEPVASAKPKSA 487
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 276 bits (707), Expect = 3.130e-84 Identity = 209/362 (57.73%), Postives = 235/362 (64.92%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVS-----ESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKL-----LKRKKGEAKSAAVAARKG-----TPAPTAALHKNDKNVKAGLGNKQPAV-------------------------RAAPAAASLDPCKNDQA----------------------------NRLTASESSFLKKLLAKQHGTESGDSEEDD-DESVDHLQDARSEPQDDLENDDSQGAGDGEADE 1075
V ++ + D+ RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKASKGAS DPLDVDSG SEQ P+G++KASVKTR+AG XXXXXXXXXXXXXXX ESESES TT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+ A AA +E R+ +L RKKGEAKSA VAA+K TPAPTAA NDKNVKA G K+PA RAAPAAA+LDP KNDQA NR TAS S++KKLLAKQ+ ESGDSEE D DESVD L+DAR+EP DLE+DDSQGAGDG ADE
Sbjct: 96 VACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADE 457
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.470e-65 Identity = 149/282 (52.84%), Postives = 165/282 (58.51%), Query Frame = 2 Query: 692 EAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQ--------------ANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQ-----------------------GAGDGEADEASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTKPERS 1426
E KLLKRKKGEAKSAAVA RK PAPTAALHKNDKN KA G K+PA P AA N A+ T + + L ++L ++ S D+ + R L S+ A KVMREWRAALHRLRL R+EGVNA+ITTIQNDS DRDGNVVKALVGNPMPT KRWL QLAAVDVCHD TCCPETKLLKDAVKTH I+A DTETPVAS KP +AK K GKTK +RS
Sbjct: 11 EVKLLKRKKGEAKSAAVAPRKEAPAPTAALHKNDKNEKAPPGTKKPAATLDPPAAKSKKSLNXXXXXXXXXXXXXXXAASTWTHARTIRLVRILCRRARRTSLDARK------------RRRVMTRLPRTGSRKMMXXXXXXXXXXXXXXXXXXXXXXXKAPAMAKLTKVMREWRAALHRLRLTRIEGVNAAITTIQNDSKDRDGNVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRS 280
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 217 bits (552), Expect = 5.910e-63 Identity = 151/273 (55.31%), Postives = 167/273 (61.17%), Query Frame = 2 Query: 221 IDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESF------TTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKR----------------EAKLLKRKKGEAKSAAVAARKG-----TPAPTAALHKNDKNVKAGLGNKQPAV-------------------------RAAPAAASLDPCKNDQ 883
+ D RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKAS+GAS DPLDVDS EQ PKG++KASVKTR A G KVSE SE TTHT+RSARRK+ PEQRK+LTE+SKSTC D++KER+ A AA +EVS+KR EAKLLKRKKGEAKSAAVAARK TPA TAAL NDKNVKA G K+PA RAAPAAA+LDP KNDQ
Sbjct: 80 LPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNACGK--------------KVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLDPSKNDQ 338
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.940e-45 Identity = 118/174 (67.82%), Postives = 135/174 (77.59%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXX---KVSE--SESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKL 703
V ++ + D+ RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKASKGAS DPLDVDSG SEQ P+G++KASVKTR+AG XXXXXXXXXXXXXXX VSE SESES TT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+ A AA +E R+ +L
Sbjct: 137 VACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRL 310
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE) HSP 1 Score: 117 bits (292), Expect = 7.530e-28 Identity = 65/105 (61.90%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 1076 ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTD-RDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPAS 1387
ASLK+MREWRAALHRLR R+EGVNA+ +D D DG + RWL Q AAVDVCHDDTCCPE KLLKDAVKTH I+A DTE PVAS +P S
Sbjct: 28 ASLKMMREWRAALHRLRNTRIEGVNAA----HDDPKDSEDGEWL------------RWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKS 116
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 4.090e-24 Identity = 81/189 (42.86%), Postives = 88/189 (46.56%), Query Frame = 2 Query: 1046 QGAGDGEADE---------------------ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTT---------------------------------------------KRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTK 1414
QGAGDG+ADE ASLK MREWR AL+R NDS D DGNVV+ALVGNPMP + +RWLL LAAV+VCHDDT PETKLLKDAV H I A DTE PVAS KP SA+ K GKTK
Sbjct: 10 QGAGDGKADEIEDPSLVHFRACLAGALPWKKASLKAMREWREALYR-----------------NDSKDGDGNVVEALVGNPMPASNRRLHVLAHHSPSSFLCACTCTVGWLINLDVLPVLPWPAFLPCHPRRWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.827.1 >prot_Ecto-sp6_S_contig102.827.1 ID=prot_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=420bp MDRLVAGFVRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTback to top mRNA from alignment at Ecto-sp6_S_contig102:1955..7707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.827.1 ID=mRNA_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5753bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:1955..7707+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:1955..7707+ >mRNA_Ecto-sp6_S_contig102.827.1 ID=mRNA_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:1955..7707+ (Ectocarpus species6 EcLAC_371)back to top |