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Homology
BLAST of mRNA_Ecto-sp6_S_contig101.826.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.940e-44 Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1 Query: 7 DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISRAVASAVQEPVG 387
DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISR+VASAVQEPVG
Sbjct: 1399 DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISRSVASAVQEPVG 1525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.826.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FQN8_ECTSI | 1.940e-44 | 99.21 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 166.0 |
| Seed ortholog evalue | 1.2e-38 |
| Seed eggNOG ortholog | 2880.D7FQN8 |
| Model size | 388 |
| KEGG ko | ko:K08592,ko:K12616 |
| KEGG Pathway | ko03018,map03018 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| EggNOG free text desc. | deadenylation-independent decapping of nuclear-transcribed mRNA |
| EggNOG OGs | KOG1916@1,KOG1916@2759 |
| EC | 3.4.22.68 |
| Cds size | 387 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko03019,ko04121 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348735.080421-CDS-Ecto-sp6_S_contig101:639306..639438 | 1682348735.080421-CDS-Ecto-sp6_S_contig101:639306..639438 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 639307..639438 - |
| 1682348735.0940864-CDS-Ecto-sp6_S_contig101:640401..640497 | 1682348735.0940864-CDS-Ecto-sp6_S_contig101:640401..640497 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 640402..640497 - |
| 1682348735.1115222-CDS-Ecto-sp6_S_contig101:641402..641561 | 1682348735.1115222-CDS-Ecto-sp6_S_contig101:641402..641561 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 641403..641561 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.826.1 >prot_Ecto-sp6_S_contig101.826.1 ID=prot_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=129bp
MSDTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVD
PLQASMSTMHGHQQRQQQALAAAAAAGAQAGVQSQAAGMATATARAQAGN
VRRELLESREDLSRDISRAVASAVQEPVG back to topmRNA from alignment at Ecto-sp6_S_contig101:639307..641561- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig101.826.1 ID=mRNA_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2255bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:639307..641561- (Ectocarpus species6 EcLAC_371)
ATGTCAGACACGAGAGCCAACGAGCGCGCAGCGCTAGTGGGAGACATCTC
TTCGTCCGTGGACCGCAGCGTGAGGAGGGGCATGGTGGAGACGGTGGCGA
CCCCCCTCGCGAAGCTGGTGGTCAGCACCGCGCGCCAGGTCGTGGTCGAC
CCTCTACAGGTGTGCGCTTGTGGTGTATATTTTATTTTCCTTACAAGGAA
CATGACAAATCCATCTCTCCCACAGATAAGATTCCGGGTAGATTGGCAAT
GATTTTGTAGTGTTGTACGGTGACATACAGCGATATCTCCCCTGTGGGTA
ACACGCTCCGCAAGAAAGTTAGGTGGGCATCTTGTGTATCTGGTGGTGTG
CTTGTTTCGCGTGTGTTTTGCTTTGAGGTCGTCGACCATCGCGCCAAGGG
CGACACATACCGTGGGCGACACGAGATGCCACACTCTTTTGATCGATTTT
GTCAAAGCTCCATTGCTCCGCGACGAAGAGGATGGTACGAATCAAACGAC
GTGTTTTCGGAAAGCTCTCGACGAGACGGTGGCGGCACGCTAGTTTGCGG
CACCGCCTCTCTTTCTGCCGTGGCGAAATCAGCTCTAGTAGTCCGTCATG
GCGGTGTGGCATCTTATGTCACCTACCTATCGTGGTTCGGCAGTGGGAAG
GCTTAAGCCCAAGGGCGAGACGCGGTCGTAAGGGTTTGGTCTCGGCGTGT
GTTTGTCTGTGCAAGACTTTTGGGGCCGTGTTTTACCGTGGGAGTTTGCG
GTGCGTCTTGTAGTGGCGATGGCGAGAGAGCTTTCTCGTGGCGTTTTGGC
CAACCACGCGCGCGATCGAAACGTCCCGTTTGTGTCGGAATCCCACAAGC
CGTATGCAATACAACGCTACGGGTACACGAAGCAGCAGACCGGCTTGATC
AGACGTCCTCTCTCTGCCTATTATTTGAGTGGTTGATGGATGCAATGTCG
CAACGAACGACCCCCCTCCCCCCCTCGTGTCAATGGTCTAACGACTACGG
CATGTACACCCCCCCCCCCCCCCCCCCCGGTTGCGTACCCATCGGCCGAA
TCGTACCCGCGTAGGCGTCCATGTCCACCATGCATGGCCACCAGCAGAGG
CAACAACAAGCACTGGCGGCGGCCGCGGCTGCGGGTGCCCAGGCGGGCGT
GCAGTCGCAGGTAAATCGAGAGCATCGGTAGGGCTAGAGGGTCAGAACAA
CTGGTTGAAACGCGCTTTGTCCTGCATGCAAGTCATAGGTCGCGCGGAGA
GAGAGATGAGCGGAATGTTTGGGCGGCACGTTTCCCCAGTCTTGGCTGCA
TCATAGCTGGTGTCTGGTGTTATTCTGTTGTTGGTAAATCGCTCGAACCT
AAGGCCGGGTGTCAAACGCGAACCTTCATGCCACTCCACACAATCGGTTT
CATCCAGCTTTTTTGGGTTTAGTAGCGCGTGCCTGTCCCGCGAAAACACA
CACATGCATAGCTGTCCTCCTATCCATTAAGGCGGGAGACAAACAATGCA
GTGACCGCTCGTCCTGCTGATGATGCGCCCGATTTCGGTTGCAAGCTGTT
CTTTTCTGTCGCGGGGCTATGACCCGAAGATTCGTGGTAGCACCCCTGCC
GCTGGCTGCTTCGGTCGGCATGGGTTGCGGCAACGAACTGACTGGATTCC
GTCGTTGCAGATCCCCCATGTGTGCTTGTTGCTCCATTCTGAGCCTCTCC
TTGACTTGTTGTCATCGCTCACCGTAGGTGGTCATTGACGAGACGGCAAC
GAGCCAGTCAGTTCAGAGGTACCGTATGTAGCAGTGCGAGTTATCGCACG
CCCCCCAGACCAACTTTCAAAGCCCGATTGCCCCATAAACAAGGGTACCA
TACCAAAACCGACCGATGTTCTACGTGCAAGGAAAGGTAGCTCTCGACGA
GATACATCTGTCCAAGCTACCCCTTTCTCGGCATTGTTCCGCCTCTTGTG
GAGCCAATCGAGCTGCGAACCTCGGTCTAGGGAACGCGCGATAACTCAAA
ACACTCTCTACGGTTTTCGCTGGAAAGCAATGCAAGCCTGTCGAAGGCGT
ATGTCGGCCCCACCGACTTGCCCGCACGACCTGAATGCTGGTTGTCCATC
CTGCGTTGTTCGTGTTTCGACAGGCGGCTGGGATGGCGACGGCGACCGCT
CGAGCCCAGGCAGGCAATGTCCGGCGGGAGTTGCTTGAGAGCCGGGAAGA
CCTGTCGAGGGACATTTCGAGGGCCGTGGCTTCGGCTGTTCAGGAGCCCG
TCGGG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig101:639307..641561- >mRNA_Ecto-sp6_S_contig101.826.1 ID=mRNA_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:639307..641561- (Ectocarpus species6 EcLAC_371)
ATGTCAGACACGAGAGCCAACGAGCGCGCAGCGCTAGTGGGAGACATCTC
TTCGTCCGTGGACCGCAGCGTGAGGAGGGGCATGGTGGAGACGGTGGCGA
CCCCCCTCGCGAAGCTGGTGGTCAGCACCGCGCGCCAGGTCGTGGTCGAC
CCTCTACAGGCGTCCATGTCCACCATGCATGGCCACCAGCAGAGGCAACA
ACAAGCACTGGCGGCGGCCGCGGCTGCGGGTGCCCAGGCGGGCGTGCAGT
CGCAGGCGGCTGGGATGGCGACGGCGACCGCTCGAGCCCAGGCAGGCAAT
GTCCGGCGGGAGTTGCTTGAGAGCCGGGAAGACCTGTCGAGGGACATTTC
GAGGGCCGTGGCTTCGGCTGTTCAGGAGCCCGTCGGG back to top
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