Homology
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match:
A0A6H5JJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF2_9PHAE)
HSP 1 Score: 52.4 bits (124), Expect = 3.520e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2
Query: 3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
VGRS G VAIE KVRI RVPS+LD E TRRVD+ FH
Sbjct: 67 VGRSSGAVAIEEKVRIPRVPSTLDPERVTRRVDSPFH 103
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match:
D8LMZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ0_ECTSI)
HSP 1 Score: 53.5 bits (127), Expect = 8.470e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2
Query: 3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
VGRS G VAIE KVRI RVPS+LD EG TRRVD+ H
Sbjct: 66 VGRSNGAVAIEEKVRIPRVPSALDPEGITRRVDSPLH 102
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match:
D8LMZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ8_ECTSI)
HSP 1 Score: 53.5 bits (127), Expect = 8.620e-7
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = -2
Query: 3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
VGRS G VAIE KVRI RVPS+LD EG TRRVD+ H
Sbjct: 66 VGRSSGAVAIEEKVRIPRVPSALDPEGITRRVDSPLH 102
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Match:
A0A6H5JPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB1_9PHAE)
HSP 1 Score: 52.4 bits (124), Expect = 1.320e-6
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = -2
Query: 3 VGRSGGNVAIEGKVRIRRVPSSLDSEGFTRRVDAFFH 113
VGRS G VAIE K+RI RVPS+LD EG TRRVD+ H
Sbjct: 68 VGRSSGAVAIEEKLRIPRVPSALDPEGITRRVDSPLH 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.822.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 3.52e-7 / Id = 72.97 Expect = 8.47e-7 / Id = 72.97 Expect = 8.62e-7 / Id = 72.97 Expect = 1.32e-6 / Id = 70.27 Sequence A0A6H5JJF2_9PHAE D8LMZ0_ECTSI D8LMZ8_ECTSI A0A6H5JPB1_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 177 Hectar predicted targeting category no signal peptide or anchor Exons 1 Ec32 ortholog description Hypothetical protein Ec32 ortholog Ec-16_001120.1 Cds size 177
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348734.7367904-CDS-Ecto-sp6_S_contig101:591969..592146 1682348734.7367904-CDS-Ecto-sp6_S_contig101:591969..592146 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 591970..592146 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.822.1
>prot_Ecto-sp6_S_contig101.822.1 ID=prot_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=59bp
MWKKASTLRVNPSESSEEGTRRMRTFPSMATLPPLRPTNASHGILPGNIR back to top mRNA from alignment at Ecto-sp6_S_contig101:591970..592146-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.822.1 ID=mRNA_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:591970..592146- (Ectocarpus species6 EcLAC_371)ATGTGGAAAAAAGCGTCCACCCTGCGGGTAAACCCCTCGGAATCCAGCGA
AGAAGGAACCCGCCGGATGCGCACCTTCCCCTCGATGGCGACATTGCCAC
CACTGCGCCCAACCAATGCCAGCCATGGGATTCTCCCAGGAAACATACGC
GTGGAAGCGCATATTTTTGAGCCTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:591970..592146-
>mRNA_Ecto-sp6_S_contig101.822.1 ID=mRNA_Ecto-sp6_S_contig101.822.1|Name=mRNA_Ecto-sp6_S_contig101.822.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:591970..592146- (Ectocarpus species6 EcLAC_371) back to top