mRNA_Ecto-sp6_S_contig101.815.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: D8LMZ4_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ4_ECTSI) HSP 1 Score: 227 bits (578), Expect = 3.740e-71 Identity = 168/177 (94.92%), Postives = 171/177 (96.61%), Query Frame = 1 Query: 247 MVIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLSSSDRVVEALQHRPKTTVVLGDAGDYSRRRQEDPLTSSVDR 777 MVIARSLKDAARLGSATTSLLLR+SEDLVCQNLMCAKIGEACVCRLAVHLSRLGKL+ELDVAENDLGVLPEPVFELPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGL SSDRVVEALQHRP+TTVV GDAGDYSRRRQED TSS DR Sbjct: 1 MVIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTEVHVDGNSGLGSSDRVVEALQHRPQTTVVFGDAGDYSRRRQEDASTSSADR 177
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A1V9ZV51_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZV51_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 5.030e-19 Identity = 44/78 (56.41%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483 +IA+SL+DAA S+ L+LRKS+DLVC+NLMC ++GEACVC+L++ L RL +L ELDV+EN L +LP +F+L L Sbjct: 1 MIAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQLSKL 78
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: T0QH27_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH27_SAPDV) HSP 1 Score: 88.2 bits (217), Expect = 1.100e-17 Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +IA+SL+DAA SA L+LRKSEDL+C NLMC ++GEACVC+L+V L RL +L LDV+ N+L LP +F L Sbjct: 1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSL 75
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A1V9Z9Y8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9Y8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 6.650e-17 Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +IA+SL++AA +A LLLRKSEDLVC+NLMC ++GEACVC+L++ L RL +L LDV+ N LG LP V L Sbjct: 1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAAL 75
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A067CF62_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CF62_SAPPC) HSP 1 Score: 87.8 bits (216), Expect = 1.240e-15 Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 Query: 250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +IA+SL+DAA SA L+LRKSEDL+C NLMC ++GEACVC+L+V L RL +L LDV+ N+L LP +F L Sbjct: 382 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIFSL 456
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A024GQG6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQG6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.220e-15 Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 Query: 253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +A S + AA+ G+AT L+L KS+DLVC+NLMC +IG AC CRLA L+ + KL LD++ N+L +P+ VF L Sbjct: 5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSL 78
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A485L6B7_9STRA (Aste57867_16664 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6B7_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.640e-15 Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 1 Query: 250 VIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483 +I RS++DAA A LLLR+SEDL+C+NLMC ++GEAC+CR ++ L +L +L +LDV+ N+L LP +F+LP L Sbjct: 332 MIVRSVRDAAMHMGAVKELLLRRSEDLLCRNLMCERVGEACICRFSLVLEKLPQLTKLDVSHNNLHALPPALFQLPRL 409
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A484E5V5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5V5_BRELC) HSP 1 Score: 80.5 bits (197), Expect = 9.670e-15 Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFELPAL 483 IA L+D AR GS T L L KS DLVC+ LMC +G+AC CRLA+ L R+ LR LD++ N L +LP+ V+ L +L Sbjct: 6 IATCLRDVARHGSCITELQLSKSSDLVCRQLMCEHVGDACSCRLALALERVPHLRHLDLSRNQLRMLPDAVYALQSL 82
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: A0A662YEN8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEN8_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.570e-14 Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +ARS +D AR+G+A +SL L +S DLVC+NLMC +G+AC CRL++ L R+ +L++LD++ N L LP F L Sbjct: 36 VARSFRDVARVGAAVSSLQLPQSPDLVCRNLMCEHVGDACACRLSLVLERVPQLQQLDLSSNALRALPASTFSL 109
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Match: F0WI42_9STRA (Uncharacterized protein AlNc14C107G6249 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WI42_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.750e-14 Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 253 IARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLRELDVAENDLGVLPEPVFEL 474 +A S +D A+ G+ L+L+KS+DLVC+NLMC KIG AC CRLA L+ + KL LD++ N L +PE VF L Sbjct: 5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGL 78 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.815.1 >prot_Ecto-sp6_S_contig101.815.1 ID=prot_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=178bp MVIARSLKDAARLGSATTSLLLRKSEDLVCQNLMCAKIGEACVCRLAVHLback to top mRNA from alignment at Ecto-sp6_S_contig101:501127..502543- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.815.1 ID=mRNA_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1417bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:501127..502543- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:501127..502543- >mRNA_Ecto-sp6_S_contig101.815.1 ID=mRNA_Ecto-sp6_S_contig101.815.1|Name=mRNA_Ecto-sp6_S_contig101.815.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:501127..502543- (Ectocarpus species6 EcLAC_371)back to top |