mRNA_Ecto-sp6_S_contig101.810.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.810.1
Unique NamemRNA_Ecto-sp6_S_contig101.810.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:445609..446657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348733.638027-CDS-Ecto-sp6_S_contig101:445608..4457201682348733.638027-CDS-Ecto-sp6_S_contig101:445608..445720Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 445609..445720 -
1682348733.6477609-CDS-Ecto-sp6_S_contig101:446502..4466571682348733.6477609-CDS-Ecto-sp6_S_contig101:446502..446657Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 446503..446657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.810.1prot_Ecto-sp6_S_contig101.810.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 445609..446657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.810.1

>prot_Ecto-sp6_S_contig101.810.1 ID=prot_Ecto-sp6_S_contig101.810.1|Name=mRNA_Ecto-sp6_S_contig101.810.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=89bp
SAQDPSPPQHKQQPISSLSGTPEPNPARRGGAKMQASSEHLGAITAGGGL
MRQEKQASHSALVTDFWTVEKTRTYSPPFLVVSAKPRP*
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mRNA from alignment at Ecto-sp6_S_contig101:445609..446657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.810.1 ID=mRNA_Ecto-sp6_S_contig101.810.1|Name=mRNA_Ecto-sp6_S_contig101.810.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1049bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:445609..446657- (Ectocarpus species6 EcLAC_371)
AGCGCCCAAGATCCTTCGCCACCGCAGCACAAGCAGCAACCGATCTCCTC
TCTCTCCGGCACGCCAGAGCCCAATCCTGCCCGGCGCGGAGGGGCGAAGA
TGCAGGCCTCGTCGGAACACCTGGGAGCTATCACAGCCGGCGGGGGGTTG
ATGAGGTGAGCCAAAAAGATACCCTTTGCCAGAGCTCTCAGAATTGGGTG
TGATTTCTCACCATCAGCTTTGAAAGTATGACGGCGAAGGCACACCATCA
CCACAGCATTGTTGCCGACTTGCTGTCCTTCGGTGGGGAAGGGTGTGCGT
TGGGCGCGCGGCGAGGGCATACAGTATAACTCATCCGCTCTCAAGATCTC
GAGAACCAAAGAGAGCCGTAGGAAGAGAAAAAGTTGCTCCATCTTGCTCC
ATCGGCAAAGAACTTTACAGCAGGAGAGGAGGAGCGATGGCGCTATATTG
CCGTACCGCCGCAGCTGTTCTGCACCGCCATCCGTACTACCAGTACATTA
GAAAAAGAGAGCAAAAGAAGGGATTCTTGGCCACTTTGCACCGTGCAGAG
TCAGCCTTGTTATCGGTGCGGTGAAAGAGCGGCCGTGTATGGATACAACG
GAAGGTGCTCCAAGAAGAGGATGCTGACAAAAAAAAGCACACACACCAGC
AGCTTTGTGTGCGACTGCTGTTGAATCAAATGAACCTCCGGCGATCGGTC
TTGTCTTGTCAGCCCCCCGAGTACAGCAGTAGCAATGCATTCAATCCTCC
GCCGTGATGCTCCGTGATGCTGTCCGTTGGTAAATAGCAGCACCATGCCT
CTGTTTTTCTCTCTCCACCAATTCCACCGAACGGGGGTCGATGTCAGGCT
CTCCCACCGAACTCCACGCTCTGCTTTGCTGCCCGATTCCCCTTTTTGCA
GCCCTCCACACTCCACACCTCCTCGCGGACGATCCAGGCAAGAAAAGCAA
GCAAGTCATTCGGCCCTGGTGACTGACTTCTGGACCGTGGAAAAAACGAG
GACATACAGCCCGCCGTTCCTTGTGGTAAGCGCCAAGCCGCGTCCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:445609..446657-

>mRNA_Ecto-sp6_S_contig101.810.1 ID=mRNA_Ecto-sp6_S_contig101.810.1|Name=mRNA_Ecto-sp6_S_contig101.810.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:445609..446657- (Ectocarpus species6 EcLAC_371)
AGCGCCCAAGATCCTTCGCCACCGCAGCACAAGCAGCAACCGATCTCCTC
TCTCTCCGGCACGCCAGAGCCCAATCCTGCCCGGCGCGGAGGGGCGAAGA
TGCAGGCCTCGTCGGAACACCTGGGAGCTATCACAGCCGGCGGGGGGTTG
ATGAGGCAAGAAAAGCAAGCAAGTCATTCGGCCCTGGTGACTGACTTCTG
GACCGTGGAAAAAACGAGGACATACAGCCCGCCGTTCCTTGTGGTAAGCG
CCAAGCCGCGTCCCTAG
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