mRNA_Ecto-sp6_S_contig101.806.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.806.1 vs. uniprot
Match: A0A6H5JU62_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU62_9PHAE) HSP 1 Score: 2316 bits (6001), Expect = 0.000e+0 Identity = 1451/1778 (81.61%), Postives = 1486/1778 (83.58%), Query Frame = 1 Query: 1 MRRRDGTGARGRLAGVDQSGSSKEIGPIRSPVVARLGEAVSEVPPVLPSTLAEDGVDEEDDEAFPALPPASGHRNTPGELLTPLQPPSGVTAAAGTVGLNYSSLADRLATEAAAAAKAAAGSSGALDGTAVGDGFSRLSVLPSFGSGRGGEAKPGSTSSAILPTSSDLRVLEGSSPGSMGTDGDVSRGISALPSQSPKLPSPPSRQAAAANSVTRCASAETAALRTRLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGNHSSAEEGIRSGSDEXXXXXXAKDRRDSSAHTAMTSAPAEASSSAVRGASVSPLPPRTVSASGMAAIQRAEVALVSVSTATLPMGTNTSSPLNEDESHRDISAIASIPAADAELNEAAGPASCRPETTKVDSELSEEDGGRDSCGGGG-LPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVNLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSS----RDDSAPYSMVAMSDPASRARGNATGKRRALQSPMNPGSSNSIRANGGKGNGVPVSALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIECAKLLLDAGAMVGRENARGXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGARINERTLRAVKLEPSGAGATEDKSVAQGRQVIYAGTSPGESHRGGGWSGNGGAGSATTPAITLPVQADILQRLSPEVSEISDSAPPNGGGLEVDPEYDCDMLDREPVDIREMWREKDLARREPSAGGSKETAAEGEAATRPGRPAEYVGGLRPAL----------------------------------------------------------------------------------------AGHDPPGQGRGAASEHQRQTSPSISEAXXXXXXXXATATVENAAWWAPAVIDWGPERGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSARLSPQKGKARSLQHDEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTSDVTRGLARLSNSGYLGSGPAHAWSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDQLVPLLLDTIR----CTSTLSIGRQERAVLLTAALADACPQESPRCQNEAPDPLAAPQRWRPIPPKLRGCCDAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVADAVLVLPGQPSHSDAMPLATVIDDGEDDEKNDSGNRESLSPGGRVGVQSSERDAHSADSAVDSPARVSSGGLVKDGGSGRPMADSPKMERTTKDQLENSQFLAHSMVLASRSEKFAAMLRFVQRQDGDSRTYADSVDGNSTDDDFSTDADIPEGEHRNSEESPWGDVEQGEAVGHNQGEAVDNSGQDGEVSQLPRSDSRRPLPPSDRRCHRRRRPRRNPAPREMELHSPLLTPPSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLTRQAEALLVECL-------------ASRNAGEYLFDSTTFNGTTTIQSKREEDTASAPLELLQLGVSLALPDLSAAAARAVLLQLDRVSRSEAFEESSMSKRELVMAALEAMCS 5004
MRRR GTGARGR AGVDQS SSKEIGPIRSPVVARLGEAVSEVPPVLPSTLAEDGVDEEDDEAFPALPPASG RNTPGELL P+QPP VTAAAG V L+YSSL DRLA EAAAAAKAAA SSGAL GTA GD FSRLSVLPS GSGRGGEAKPGSTSSAILP SSDLRVLEG SPGSMGTDGDVSRGISAL SQSPKLPSPPSRQA AANSVTRCASAETAALR RLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGNHSSAEEG+RSGS E AK RR SS+HTAMTS TLPMGTNTSSPLN++E R ISAIASIPAA+AEL EAA ASCRPETT+V +ELS EDGGR SCGGGG LPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECV+LLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSS RD+SAPYSMV MS ASRARGNATGKRRALQSPMNPGSSNS RANGGKGNGVPV ALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQI+CA++LLDAGAMVGRENAR XXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGA INERTLRAVKL+PSG TEDKSVAQGRQVIYAGTSPGES RGGGWSGNGGAGSA TPA TLP+QADILQRLSPEV EISDSAPP+GGGLEVDPEYDCDMLD VDIRE WR+KDLARREPSAGGSKETAAEGEAATRPGRP EYVGGLRP L AGHDPPGQGR A SEHQRQTSPSISEA ATATVEN AWWAP VIDWGP RGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLS RL+PQKGKARSLQH EAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNT DVTRGLARLSNSGYLGSGPA+AWSSS FDQLVPLLLDT+R CTSTLSIGRQERAVLLTAALADACPQESPR QN+APDPLAAPQR RPIPP LRGCCDAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVAD VLVLP QPSHSDAMP ATVI+DGE+DEKN SGNRE+LSPGGRVGVQSSER AHSADSAVDSPARVS GG VKD GSGRP DS KME TTKDQL NS+FLAHSMVLASRSEKF+AMLRFVQ QDG+SRTYADSVDG+STDDD TDAD PE EHRN EE PWGDVEQGEA GHNQGEAVDN G+DGEVSQ PR DSRRP PPSDRRCH RRRPRRN APREMELHSP+LTP SLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDL RQAEALLVECL ASRNAG+Y FDSTTFNGTTT+QSKREEDT SAPLELLQLGVSLALPDLSAAAARAVLLQL+RVSRSEAFE+SSMSKRELVMAALEAMCS
Sbjct: 292 MRRRGGTGARGRPAGVDQSASSKEIGPIRSPVVARLGEAVSEVPPVLPSTLAEDGVDEEDDEAFPALPPASGPRNTPGELLAPVQPPPVVTAAAGHVALDYSSLKDRLAIEAAAAAKAAAESSGALGGTAEGDDFSRLSVLPSVGSGRGGEAKPGSTSSAILPVSSDLRVLEGCSPGSMGTDGDVSRGISALQSQSPKLPSPPSRQAVAANSVTRCASAETAALRARLRDRWFRLEAARKAQRQREAAERALMTAEDCATLGSAASVLGWNGGDGNHSSAEEGMRSGSGENHDEGEAKGRRASSSHTAMTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLPMGTNTSSPLNQNECSRGISAIASIPAAEAELIEAAETASCRPETTQVGAELSGEDGGRASCGGGGGLPAVTGEHVYAACQAGMAGLLNDLLVRSGGRAADGKDKLRRTPLHLAAEAGSLECVSLLLKQGTRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMTMANSNQAWKSSAPSSRDNSAPYSMVVMSGQASRARGNATGKRRALQSPMNPGSSNSARANGGKGNGVPVPALSPLHEAAASGQPETLSLLLQLGVSLEERDAAAGVGGDTPLGRAVRAGQIDCARILLDAGAMVGRENARXXXXXXXXXXXXXXXXXXXXXXXXAPLDGGKSNGRLTGADGRAPTGPREKMMARRRVEPLELALREGQLACAAALIEGGAHINERTLRAVKLQPSGTEVTEDKSVAQGRQVIYAGTSPGESRRGGGWSGNGGAGSAGTPATTLPLQADILQRLSPEVPEISDSAPPDGGGLEVDPEYDCDMLDGVSVDIRETWRDKDLARREPSAGGSKETAAEGEAATRPGRPVEYVGGLRPTLGECDIDLVLEDGSRLPAHSCLLAAFSGTFCDLFLRRHGRCSRRTCPAARGGNYSKRQPVPGASEVAAAAADGREMDQRTRSRDVHHLLAGHDPPGQGRSATSEHQRQTSPSISEAAVAAAAFAATATVENTAWWAPPVIDWGPGRGEVSVRFWGAGTMSAVVKHVYTGQPPSNMHADGLGRLLVASVSLRMNRLIRQVEHLLSDRLAPQKGKARSLQHAEAARLLRAARVLRATDLEKRCTLYMQANGVFPAVMKLRRELVVPSLNTLDVTRGLARLSNSGYLGSGPAYAWSSSGAVSTSSASATVAAAKLAVDLSLRKRAVDFDQLVPLLLDTVRFITWCTSTLSIGRQERAVLLTAALADACPQESPRSQNDAPDPLAAPQRRRPIPPNLRGCCDAVRCDGDRWNADRPAVPLVSNVSAFSHGMGWLLRTGTVADVVLVLPEQPSHSDAMPPATVIEDGEEDEKNYSGNRENLSPGGRVGVQSSERGAHSADSAVDSPARVSPGGPVKDEGSGRPATDSRKMEGTTKDQLVNSRFLAHSMVLASRSEKFSAMLRFVQGQDGNSRTYADSVDGSSTDDDIFTDADTPEREHRNREEPPWGDVEQGEAAGHNQGEAVDNIGKDGEVSQPPRIDSRRPSPPSDRRCHCRRRPRRNTAPREMELHSPILTPQSLGLFLEFLYTGVLDTSLSTRELSELALIADEYLVPDLIRQAEALLVECLVRRGDVRYSLQVTASRNAGDYSFDSTTFNGTTTVQSKREEDTESAPLELLQLGVSLALPDLSAAAARAVLLQLERVSRSEAFEQSSMSKRELVMAALEAMCS 2069 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.806.1 >prot_Ecto-sp6_S_contig101.806.1 ID=prot_Ecto-sp6_S_contig101.806.1|Name=mRNA_Ecto-sp6_S_contig101.806.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1669bp MRRRDGTGARGRLAGVDQSGSSKEIGPIRSPVVARLGEAVSEVPPVLPSTback to top mRNA from alignment at Ecto-sp6_S_contig101:376266..385567+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.806.1 ID=mRNA_Ecto-sp6_S_contig101.806.1|Name=mRNA_Ecto-sp6_S_contig101.806.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9302bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:376266..385567+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:376266..385567+ >mRNA_Ecto-sp6_S_contig101.806.1 ID=mRNA_Ecto-sp6_S_contig101.806.1|Name=mRNA_Ecto-sp6_S_contig101.806.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=5007bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:376266..385567+ (Ectocarpus species6 EcLAC_371)back to top |