mRNA_Ecto-sp6_S_contig101.805.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL9_9PHAE) HSP 1 Score: 106 bits (265), Expect = 4.030e-24 Identity = 73/109 (66.97%), Postives = 81/109 (74.31%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL G+GRDSDNN SA DG G D D XXXXXXXXXXXXD A DIL+NRA+AASQQS L+ SG P+EAV V KAV+TEKAPPAWVL+M MPGAAHQ +I
Sbjct: 103 ALVGDGRDSDNNSSASDGAKAG-IQTLDTDPXXXXXXXXXXXXXXDLAHDILQNRADAASQQSAPLVASGGPLEAVLVSAVTKAVETEKAPPAWVLSMLMPGAAHQQNI 210
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JZR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR8_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.000e-23 Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSA-GDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL G+GRDSDNN S+ GDG GS D T XXXXXX A+DIL+NRA+AASQQS SLL SG P+EAV VG KAV+ EK PPAWVL+M MPGAAHQ DI
Sbjct: 86 ALVGDGRDSDNNSSSVGDGAKAGSTQTLD----TEPLPDXXXXXXDHLARDILQNRADAASQQSASLLASGGPLEAVLVGTVTKAVEAEKDPPAWVLSMLMPGAAHQQDI 191
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JXG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG3_9PHAE) HSP 1 Score: 105 bits (263), Expect = 7.810e-23 Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = -3 Query: 49 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDIPQVNRRSLAHDLDRKSCVVRSPFS 447
AL G+GRDSDNN SA G G D D XXXXXXXXXXXX A DIL NRA+AASQQS +LL SG P+EAV V KAV+ EKAPPAWVL+M +PGAAHQ DI ++ +S A D + + + S
Sbjct: 102 ALVGDGRDSDNNSSASHGAKAGKIQTLDTDPXXXXXXXXXXXXXXXLAHDILHNRADAASQQSAALLASGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLIPGAAHQQDIQKL--QSTADDNKNRITAIENYIS 232
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KWD8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD8_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.790e-22 Identity = 61/109 (55.96%), Postives = 68/109 (62.39%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL GEGRDSDNN S DG G+ DT D A IL+NRA+AASQQS+ LL SG P+EAV V KAV+ EKAPPAWVL+M MPGAAHQ DI
Sbjct: 86 ALVGEGRDSDNNSSTSDGAEAGNL-----DTDPTPEGDDDDNVDDDLAHYILQNRADAASQQSSPLLASGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLMPGAAHQQDI 189
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KSY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY0_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.150e-21 Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL G+GRDSDNN SA DG G+ D D XXXXXXXXX D A DIL+NRA+AASQQS LL SG P+EAV V KAV+ EKAPPAWVL+M M GAA Q DI
Sbjct: 86 ALVGDGRDSDNNSSASDGVKAGT-ETLDTDPXXXXXXXXXXXVDDDLAHDILQNRADAASQQSAPLLASGGPLEAVLVSAVTKAVEAEKAPPAWVLSMLMTGAADQQDI 193
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5L3Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Z0_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.930e-21 Identity = 68/109 (62.39%), Postives = 75/109 (68.81%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL G+ RDSDNN SA DG G+ D D XXXXXXXX D A DIL+NRA+AASQQS LL SG P+EAV V KAV+ KAPPAWVL+M MPGAAHQ DI
Sbjct: 154 ALVGDDRDSDNNSSARDGAKAGT-QTLDTDPSPXXXXXXXXNADDDLAHDILQNRADAASQQSAPLLASGGPLEAVLVSAVSKAVEAAKAPPAWVLSMLMPGAAHQEDI 261
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5L1K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K1_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 5.460e-17 Identity = 68/109 (62.39%), Postives = 74/109 (67.89%), Query Frame = -3 Query: 121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
AL G GRDSD G G+ D XXXXXXXXXXXXD A DIL+NRA+AASQQS LL SG P+EAV V KAV+ EKAPPAWVL+M MPGAAHQ DI
Sbjct: 86 ALVGGGRDSDXXXXXXXGAKAGTL---DTXXXXXXXXXXXXXXXXDLAHDILQNRADAASQQSAPLLSSGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLMPGAAHQLDI 191
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JYG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYG2_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 4.370e-12 Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 142 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPG 447
AL GEGRDSDNN S D A + DT XXXX D A DIL+NRA+AASQQS+ LL SG P+EAV V KAV+ EKAP + +T PG
Sbjct: 18 ALVGEGRDSDNNSSTRD-----DAEAGNLDTDPTPEDXXXXNVDDDLAHDILQNRADAASQQSSPLLASGGPLEAVLVSAVSKAVEAEKAPAG--MGLTEPG 112 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.805.1 >prot_Ecto-sp6_S_contig101.805.1 ID=prot_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=186bp MLAGPSPYRLPSGSRRRRRPQSGCRSPGVTCSAGWRLQRGSAGCPARSRRback to top mRNA from alignment at Ecto-sp6_S_contig101:372850..374573- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.805.1 ID=mRNA_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1724bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:372850..374573- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:372850..374573- >mRNA_Ecto-sp6_S_contig101.805.1 ID=mRNA_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:372850..374573- (Ectocarpus species6 EcLAC_371)back to top |