Homology
BLAST of mRNA_Ecto-sp6_S_contig101.793.1 vs. uniprot
Match:
D7FPM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM6_ECTSI)
HSP 1 Score: 74.7 bits (182), Expect = 3.480e-17
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1
Query: 1 MTRPPLLTADWPPSGIKEMASFGLLPVLNLSCRRLV 108
MTRPPL TADWPPSGIKEMASFGLLPVLNLSCRRLV
Sbjct: 1 MTRPPLPTADWPPSGIKEMASFGLLPVLNLSCRRLV 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.793.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.48e-17 / Id = 97.22 Sequence D7FPM6_ECTSI
Match Name E-value Identity Description
D7FPM6_ECTSI 3.480e-17 97.22 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 111 Hectar predicted targeting category no signal peptide or anchor Exons 2 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-16_001400.1 Cds size 111
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348731.5773668-CDS-Ecto-sp6_S_contig101:257118..257161 1682348731.5773668-CDS-Ecto-sp6_S_contig101:257118..257161 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 257119..257161 - 1682348731.5849602-CDS-Ecto-sp6_S_contig101:257535..257603 1682348731.5849602-CDS-Ecto-sp6_S_contig101:257535..257603 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 257536..257603 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.793.1
>prot_Ecto-sp6_S_contig101.793.1 ID=prot_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=37bp
MTRPPLLTADWPPSGIKEMASFGLLPVLNLSCRRLV* back to top mRNA from alignment at Ecto-sp6_S_contig101:257119..257603-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.793.1 ID=mRNA_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=485bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:257119..257603- (Ectocarpus species6 EcLAC_371)ATGACACGGCCACCCTTGCTCACGGCGGATTGGCCGCCTAGCGGAATCAA
GGAGATGGCTTCATTTGG GTGTGTTTTGCTCCTGCGTGTGTGTCAAACCG
GCCGTCCTGCTACCCCGACTCAGAAACGCTGGTAGTTTGTAACTCGGTAG
GTACCTTATTACAGTCGATGATTTTTGTCGTTTATCTCTTGTATGAGTAC
ACTGGGAAAGAGGGAGGGGAGGGGAGGGCATGGGCAGTGTAGTAGCCTTG
GCGACTATTTTGCAGTGCAAGAGGGGCCCCGCACCGTGTTTTGAGAGACA
CCCAATCCGTTCACACGATGGATCGGCGCTCTCTTGTTTTGGTCTTTATC
TCCGTTGCTCCCCTCCCTCCCCGTCTGCGGCGGCGTTATGCTTGTACTAT
CAGCTTACCCGATCCCTCTTTCGTCTTTTGTCTTGAGAATAGTTTGTTGC
CGGTGTTGAACTTATCCTGTCGTCGTCTGGTCTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:257119..257603-
>mRNA_Ecto-sp6_S_contig101.793.1 ID=mRNA_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:257119..257603- (Ectocarpus species6 EcLAC_371) back to top