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Homology
BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 6.260e-6 Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = -1 Query: 40 LRADEALRKQDRVMTAFRGYAGDTARDLDNASCHQVHLDS 159
LRADEALRK +RVM FRGYAGDT R+LD + ++S
Sbjct: 100 LRADEALRKHERVMATFRGYAGDTERELDTLVLSKFGIES 139
BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE) HSP 1 Score: 48.1 bits (113), Expect = 5.550e-5 Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = -1 Query: 76 LRADEALRKQDRVMTAFRGYAGDTARDL 159
LRADEALRK +RVM FRGYAGDT R+L
Sbjct: 140 LRADEALRKHERVMATFRGYAGDTEREL 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 159 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 2 |
| Cds size | 159 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348731.413257-CDS-Ecto-sp6_S_contig101:227637..227727 | 1682348731.413257-CDS-Ecto-sp6_S_contig101:227637..227727 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 227638..227727 - |
| 1682348731.4221861-CDS-Ecto-sp6_S_contig101:231660..231729 | 1682348731.4221861-CDS-Ecto-sp6_S_contig101:231660..231729 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig101 231661..231729 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.790.1 >prot_Ecto-sp6_S_contig101.790.1 ID=prot_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=53bp
YVDEERCEVTTSCGVEMHLMARSVVEVPRRVACIAAKSCHYPVLLAKGFV
RP* back to topmRNA from alignment at Ecto-sp6_S_contig101:227638..231729- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig101.790.1 ID=mRNA_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4092bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:227638..231729- (Ectocarpus species6 EcLAC_371)
TATGTCGACGAAGAAAGATGTGAAGTCACGACGTCGTGTGGAGTCGAGAT
GCACCTGATGGCAAGAAGCGTGGAGGAGGAGGTGGTGGAGGTGGAGGAAG
GAGGAGTAAAGGAGGAGTAAAAGGAAGGGCGACCAAGCAAGCACGGTGAA
TATGACTGATGGATGGCGGTGGTGACAATGTTAGGGACGTGACTCATCCT
ACCCTCTGCGTTCTTTATGGCACACCCACCCGTAGCCAAGAGACGTGGGA
ACTGAAGGATGGGGACGTGGTAAGCAAACTAGGGAAATAACCGGTGGGTA
GGGAAGGCAAGGAAGGGCTTAGACCCGAAGAAAAGGGGGAGGGGGGGAGT
CGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGTGGTGA
AAACGGGGTTCGAGGAAAGCCTATGGCTTGAGATACCTGGAGAGCGGGGT
GAGAAAGATTTGTTTGTAGGGAACGTATACGTCCCACCGTCGTCGAAGAA
AGTCGCAAGCAAGGCGCAGGAGAACTTCGGACAAATTGCGGAAGATGTCC
AGAGGTTCAGTAGGAAGGAGAAGTTGTCATGGTGGGCGATTTCAACTCCA
GAGTAGGGAAAGCTTGCAGTAGAGGACAGGCGATCGGGCAGCACGGAGAA
GACAAAGCGAATGACGACGGAGTGAGTATGCTTGGATTCTTGGGAAGCAA
CGAGCTGATGGTGTTGAAAGGTAGGAGGGAATGCGATAAGCCGGAGTTCA
CCAGGCATAGGGCAGTTCGCAATGAATACTCGATCCTCGACTTCATCCTG
GTAGATAGGGGGAGCACACAGGTCCCAGGGCTGCACGTAAGTGCGATAGA
TATAGGTTCGACCGACCATTTCCTCATATGGGCAAGCATCGACCGATCTA
GAAAGACGGAGAGTAAGAAACAGAGGAAAGTGTTCCGGTGGAAAGTAGAG
CGTTTGGGAGACGAGGGGACACGGGATGAATTCCAGAAAGGACTGGCTGG
TAGTGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAGG
CAGACGTGCAAGTAGCAGGGGACAGGGTGATTGAAGGATGGGAGTCCATA
GTGAACATAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGG
GGTATCGGTTAAATGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAAC
GTAGAGAAGTCTTCAAGCAGTACCTAGGTGAGGGGTCTGAGGAGAGTTGG
GAAAAGTACAGGGCCAAGAGGAAACAGGTGAAGGGACTAGTGAAAACATT
TGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGGGAACACCAA
GCAGATGTGGGAAGGGATTAGTGGGATGGTAAAAAGACCGCGCAAGGGGG
GATACAGGGGTAGCAACTCTGCGAGGTGTGAATGGTGGACTAGTCAGCAG
TGGGGAAGGAAAAAGGGAAGTTCTAGCGGGACACTACAAGAGACTTAGAG
TGCCTTCGGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGAC
GCATGGGCCCAGGAAGAAGAAGAAACATCGAAGGCAGAGGTTGGGAACGT
AGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACA
AGTTGAAGTGCCACAAAGCAGCAGGGGTGGATGGGATAGTCAACGAGTTC
ATGAAGTTTGGGGGGAAGGGGATGAAGCAGTTGATGGTACTGCTGTACAA
CTGGGTGTGGAAAAACGAATATGCGCCAAGTAGATGGAGCGAAGGAGTGG
TTGTGAGCTTGTTTAAGAAAGGAGTGGGGGATCGAGGAGATTGCAGTGCT
GGACCAGTACACATACCTCGGAGTAGAGATCGTAAACGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCGCGAACAGGGAAG
CTACATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGGC
GGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGCACACCGGAGAAGTAT
GGGACGGAAATAAGGTAGTGAAAGAACCCGAGGCGGCGCAGATGAAACCA
GCAAAAATTATCCTAGGATGCTCCAAGCGCGCAAGTAATGCAGCCGTCAG
GGCAGAATTGGGGATCCAGTCCCTACGGTCGGGAAGAGACGCAAGGAAGC
TGACATGGCAATATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGA
ATAGTATGGGAGGCGAAGCGGGCAAACAAAAAGCGGGATAGGCCACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTGGACATCGACG
AAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATG
AGAGAAGAACGGAATCTAAGGAAAGAAACCAAGGATAAGGAGGGTCTAGA
AGTGTACGGAATGTTGAAAGAAGGAACAGGGTTCAAGGACTACCTACATG
GACCAATGGATGCAGGGACAAAGCTTAAGGTCAAATTCAGGACCGGGGAC
ATAGGCCTTCGAGAACGTCGACGAAGACAAAGGACGGTAGACGACGAAGA
CGACAAGTTCAAATGTGATTGCGGCTTCGAGTGCGAAGACCGTGTTCATG
TAGTCGCGGAATGTCCGTGGTACAAAGAGGAGAGGGAAGTGTACATGACC
GAGCTGGGAAAAATACAAGGGACGTACAGGGAGATGTTTGAGGCATGGAA
TAGAGAGGAGAGGACGGTAGCTGTACTGGGGAATAGGAAGTGGTTTGAAA
AGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTG
AGCCACCTTTGGCAAAGTACGAAGGAACGATTGGCCATCGGTGATCGGTC
CTGTGAATGCTCCGTCCTCTGTACGCCCCCCACCCGTACCCTGATCGTCT
GCTTTTGGTCGAAAGCCTTAGAAGTACATAGTAGACGAGGCGTTCACGGC
GGATTGCTACACTAATAATGGCCTGATGGTATGCTTGATGAATTGATTGA
AATGAAGAGCAGAATAGATGAGTGGCAGATGGTCTGATGATATGGACCCG
CCCACCCCCCCCCTCCCCATGCACAAAATCAACAATGGTTAGCTTACCGT
TTAGTGACGTGATCTCTTGGGAGGACGTTCGTTAGAGGCGGAAGAGGAAC
TCCCGCCGCCGGAGTTGGGGTTGTACCGTTTGACGGGGGAAGCAGATGTT
GAAGAAGGCGAAGACTTGTCGTGCATCTGGGCCCGGACGGACTCCATGAA
GACAGTCCGCCGCTTGACAAAGTAAGGGCGACAGACCTGTCTGTCGGGGT
CGCGAGACTCGCTTGAGGTGTCGAAGTGTTCTAATTTAGATCTACCTTCG
CAGGACTTGCACTGCGTGGATTTGGACGGTACGTAAGAGTCACACCACAT
GTCCGGGTCCAAATGGGCGTACCTGACCACGGCCCGTTTTTAGTCTTTCG
ATTCAGTCACAATATTCTTTGCGACTATGGCATCACTTTGAAATTTGACG
TCACAAACAAAACTCTTCGCCGTTGCAATGTCGCGCGGATTAATCTTGGT
TATCCACCGGCCGCACCCAGCGTGGGGGCAGCGGTTCGAGTACTGCGACA
TTATGGGAGAGCCGTCTCCCTCCCGGTCCATGGTCGTAAGACACGACAGA
CATTTGAAGGCTTGAGCCATTTCTTCTGCAAAATGAAATGATGCAAAGCA
GGCAGTCGGGGGAAATATGAAGGGTTTATTTGGTATATATGCGTTCATTG
TGCACTGTCAACGTGATCCTTTGTTCGAATTGGGTACGCTGCGGCGCGCT
CGACGAACGTTGCCTTTTGCAGCTCATCGGGTAGGGTACCGACCCAAAAC
CCGTTCGCCAATGCTGCATCAGGTAATTTGTTCTTCGCCAACGACCGGTA
GCACTATCTTGCATGGTTCCTCTGACTCGATACCGTACTTACTTAGAACG
AGGTTGTCGAGGTCCCGCGCCGTGTCGCCTGCATAGCCGCGAAAAGCTGT
CATTACCCTGTCCTGCTTGCGAAGGGCTTCGTCCGCCCTTAA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig101:227638..231729- >mRNA_Ecto-sp6_S_contig101.790.1 ID=mRNA_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:227638..231729- (Ectocarpus species6 EcLAC_371)
TATGTCGACGAAGAAAGATGTGAAGTCACGACGTCGTGTGGAGTCGAGAT
GCACCTGATGGCAAGAAGCGTTGTCGAGGTCCCGCGCCGTGTCGCCTGCA
TAGCCGCGAAAAGCTGTCATTACCCTGTCCTGCTTGCGAAGGGCTTCGTC
CGCCCTTAA back to top
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