mRNA_Ecto-sp6_S_contig101.777.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.777.1
Unique NamemRNA_Ecto-sp6_S_contig101.777.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: D7G2U3_ECTSI (DUF913 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U3_ECTSI)

HSP 1 Score: 780 bits (2015), Expect = 7.170e-270
Identity = 504/558 (90.32%), Postives = 508/558 (91.04%), Query Frame = 1 
Query: 1729 MDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQQGFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXX--QHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAVVEAGG 3396
            MDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQ GFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXX         +GK    XXXXXXXXXXXXX  XXXXXXXXGKA+G    XXX                        GGPLADPSPSQKALLFS+LNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXX  QHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARK    +GG
Sbjct:    1 MDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQ-GFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXVDDP-----KGKXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARGAPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPLADPSPSQKALLFSVLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKGGRGSGG 552
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)

HSP 1 Score: 756 bits (1953), Expect = 3.060e-257
Identity = 492/586 (83.96%), Postives = 496/586 (84.64%), Query Frame = 1 
Query: 1738 LRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQ---------------QGFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVV-------ATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPA---PPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXX-QHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAVVEAGGMSATVAS 3417
            L WVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQ                GFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAA                            +GK EG XXXXXXXXXXXXX  XXXXXXX GK KGTTXXXXX         ATGG PD V +GGA DDAS+AAGGPLADPSPSQKALLFSLLNALSITFQNQ      VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTV YLLRSGIVDEYLKVLTATPA   PPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPA              SRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXX QHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAV+EAGGMSA VAS
Sbjct:    9 LLWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQVGLRLCSDCVHMVKGTGFGGMGKPFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAAAAGDNRSGGGCSGMVVDDP--------KGKAEGXXXXXXXXXXXXXXXXXXXXXXXDGKVKGTTXXXXXXXXXXXXXXATGGDPDGV-QGGAEDDASSAAGGPLADPSPSQKALLFSLLNALSITFQNQ------VGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVPYLLRSGIVDEYLKVLTATPATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPA--------------SRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAVMEAGGMSAAVAS 565
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: D7G2U4_ECTSI (DUF908 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U4_ECTSI)

HSP 1 Score: 397 bits (1020), Expect = 6.170e-126
Identity = 268/300 (89.33%), Postives = 268/300 (89.33%), Query Frame = 1 
Query:    1 MRIRASSGAGGVGQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHSMCSIHKDKAVSAELMTLSGGWGGRGQGLGLLACVTGRVEGEAKVSGRYAPSQGTDEAAAAGAEDDADGADDGSSXXXXXXXXXXXXXXXXXESNRAPSPGGYTRFRTIFV 900
            MRIRASSGAGGVGQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   CCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHSMCSIHKDKAVSAELMTLSGGWGGRGQGLGLLACVTGRVEGEAK         GTDEAAA               XXXXXXXXXXXX     ESNRAPSPGGYTRFRTIFV
Sbjct:    1 MRIRASSGAGGVGQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGEDEWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHSMCSIHKDKAVSAELMTLSGGWGGRGQGLGLLACVTGRVEGEAK---------GTDEAAAXXXXXXXXXXXX-XXXXXXXXXXXXXXREKEEESNRAPSPGGYTRFRTIFV 290
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A448ZD07_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 314 bits (804), Expect = 2.270e-84
Identity = 301/1079 (27.90%), Postives = 471/1079 (43.65%), Query Frame = 1 
Query:  154 WEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHSMCS-IHKDKAVSAELMT-LSGGWGGRGQGLGLLACVTG--RVEGEAKV---SGRYAPSQGTDEAAAAGAEDDADGADD-----------GSSXXXXXXXXXXXXXXXXXESNRAPSPGGYTRFRTIFVPARVGGPPAGEAGDADSTSEGMFRRLTKEHTA--VPKRRLFSLLARVRSAVAWRGGVEARRAAVRRRIMALTALVYCHPSQEALMAYMSIQPELIQELVDLVR-------VRTDQAAQMT-------------------VPLDISVLAVHCLAALVHTRSGAS-SLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASLFIMPEQDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALSLGIAFVEAXXXXXXXXXXXXXXXXGGAPNADGGGVKEEKGTAGASSPVLSEMDQLR----WVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLN-----MDGQQGFGGMGKPFQ----RRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQV---GSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVL----TATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRE---LAGDSSA----EVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASC 3168
            +EEQ DL +W + L+R+D +L   + ++P LLLI P +                                   +++  L FL+ L+ +  NK VF+S E L  LLAA DD +A ++L  L  L +PP LH+ Q PE+    S +H  K  S + +T L+ GWG RG GLGL AC      V G+  +   +G    S   D+A     E++  G ++            +S                 ES+   S G   + R + +P +V            ST++  F+ L +      +P  RLF LLA +R   ++      R AA+ RR+ AL  +++ +PSQE +  Y   QPEL  ELVDL+R       V    AA  +                   VP  I  LA+  L AL   R G + SL   ARH+++  ELG+ +GQY GLLP L+R+ +ASL  +    +                                          A+ +G+AF+EA                                    S+P +   +QL     ++++V +L  A+VS   G +++TECGL+PALLN V ++     M          + F+     R++ +QAVQI+E A+V ++ ALSAF +L   EVL +  S EV   R+                                                                 K  +      +               D A +A+ G + +   SQ+ +LF ++  L++ F  ++ +       G+  + +  LT A++++  N D++GG L +L +TL+SDV N DP   V Y+  +G+   +LK+L    +  P PPP  +L++++P VL AL LT  GA +++E N FP   R+ H P+   P+SR     MTS+VG GLDE+MRHVP+L     KA+ +++ ++V  GD++  +E    A D+      +V +ERT + QY  NFGQ+LE  L   E+  PF ++GG + +L ++   +P     LA  SC
Sbjct:   67 FEEQVDLQEWVEPLNRIDASLSFYIQKYPFLLLISPVERTTSKGASKLAKCIVSKPARSIEEVNGVTDSVRNNILVI-LKFLSGLLTNSSNKSVFNSVEELVDLLAAADDNIASASLETLCALAMPPSLHKQQVPEIQQHSSALHISKTTSHKRLTALARGWGTRGSGLGLYACAVSDDSVFGQGSLPQQAGELNFSFFRDKAY----EENRKGENEEESSLVHVNLPANSFTEDSEMMFEATLKNSDESDD--STGSKQKRRRVALPMKVD-------RTIRSTADLFFQCLRQAGGVERIPADRLFPLLADIRLTRSFHCQAS-RVAAIERRLRALITILHANPSQEVMSGYFQAQPELCVELVDLLRPTVSSGAVSASSAAPKSSKIPRQNRDHIVTLSNSPIVPYQIRELALQSLTALAARREGGNGSLTGFARHSNILTELGVGKGQYLGLLPTLIRYSLASLGSLVSTPSCRDIESNETMASSIEKSKVDA--------------------TAMDIGLAFIEA-----------------------------------TSTPTVPRFEQLEKALLFMDSVLTLTSAIVSTPSGTSSLTECGLVPALLNTVSIDAEVASMKIMPDSSSESEIFRIQSLLRFITAQAVQILEGAIVTHSNALSAFHNLKGVEVLTARLSKEVLGAREK--------------------------------------------------------------STKNGSDNDCTTMEI-------------DKADSASIGGV-ELRASQRVVLFGVVTCLTVVFHQESTSSSVATPSGTAEIQKPELTKALIEILDNVDLYGGHLASLISTLLSDVMNSDPHV-VKYVHENGLARSFLKMLDVGPSGVPIPPPVPELIMSIPTVLAALALTEAGAKKLEENNPFPGLLRLFHHPKYAMPRSRCLLNEMTSIVGTGLDEIMRHVPSLSKSICKAIANAMMDVVAFGDQVALKEHNETAADTQCPQALDVDHERTCLVQYGLNFGQILEQILHNEEHCGPFLESGGLDAILKMYPYLMPTSDRFLAHISC 998
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 269 bits (688), Expect = 6.520e-70
Identity = 299/1093 (27.36%), Postives = 446/1093 (40.81%), Query Frame = 1 
Query:  154 WEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLCCLNFLAVLMRSCVNKHVFSSAEHLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHS-MCSIHKDKAVS-AELMTLSGGWGGRGQGLGLLACVT--------GRVEGEA-KVSGRYAPSQGTDEAAAAGAEDDADGADDGSSXXXXXXXXXXXXXXXXXESNRAPSPGGYT-RFRTIFVPARVGGPPAGEAGDADSTSEGMFRRLTKEH--TAVPKRRLFSLLARVRSAVAWRGGVEARRAAVRRRIMALTALVYCHPSQEALMAYMSIQPELIQELVDLVRVRTDQA-------------------------AQMTVPLDISVLAVHCLAALVHTRSGAS-SLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL------FIMPEQDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAA-LSLGIAFVEAXXXXXXXXXXXXXXXXGGAPNADGGGVKEEKGTAGASSPVLSEMDQ-LRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQQGFGGMGKPFQR--------------------RYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVL------------TATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELA---------GDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARAS 3165
            +EEQ DL+DW   L+ +D  L   M  +PS+LL+ P + +                                      L FL  L+R+  +K +F+SAE L  LLAA DD  ++ AL  L+ L++PP LH+ Q PE+     ++H  K  S + L  ++ GWG R  GLGL + +         G + GEA ++S  Y   +  +E             ++ S                  E +   +    T     +    R+G  P  E     ST+E  +  L +      +P  RLF LLA +R A ++     AR  AV RR+ ALT +++ HPSQE +  Y   QPEL  E+VDL+R     A                         +   VP  I +LAV  LAALV  R G++ +L   AR + V  ELGI +G Y GLLP L+R+ +ASL       I+PE +                                         DA  L +G+AFVEA                                T     P + ++++ L +V+ + +L   +VS   G AA+T+CGLIPALL  V  ++D         +  QR                    R+V++QAVQI+E A+V +  AL+AF DL   EVL+   S E+                                     + K E +                        K + +       + T                                 ++F   +  S +  N +      G   + +  LT A++ V  +   +GG + +LTATL+SDV N DP   V+Y+  SGI   +L ++            T  P  PP  +L++ VPNVL AL LT DGA  + E N FP+  R+ + P    P+SR     +T ++G GLDELMRHV  L+P  ++A+ +++K++V   ++L KRE            D   E  +ER+ + QY  NFGQLLE  L    + +PF ++GG   L+ LF  ++PG    L  AS
Sbjct:   55 FEEQVDLHDWIYPLNVIDAALCHYMKTYPSMLLVNPVERRRGQPKALSSSARSLTDVDSVPASCYPHLYIL-------LRFLEGLLRNSTSKSIFNSAEELVDLLAAADDETSDLALTALLALSLPPALHKQQAPEVQQHTTTLHNAKMPSHSRLTAIARGWGTRAMGLGLWSVIKADDSVHGQGSLPGEAGRLSVCYYSRESQNEV------------NEESQMVRIYLNESDIMVGGSAEISMDSTSDALTAESDQVSKKRRIGKIPRKET---KSTAELYYLVLERAGGMDKIPSDRLFPLLADIRLARSFHSQA-ARIGAVERRLRALTTILHAHPSQEVMNGYFQAQPELCVEIVDLLRPTVSSANIAAASGRATETNSPLQRDAITCLSSCQPVPYTIRMLAVESLAALVARRDGSTGALSGSARLSTVLAELGIGKGYYLGLLPTLLRYSLASLDSPGHESILPEIEPEDLD------------------------------------DATMLDVGMAFVEA--------------------------------TMEPLPPRIVQVERTLEFVDNLLTLTSTIVSTPTGTAALTDCGLIPALLATVAHDLD---------RTIQRLLPDSSNCSTQEILRVYSLLRFVLAQAVQILEGAIVTHGNALTAFHDLRGVEVLSGRLSGEI--------------------------VTTGPDMLSRGQQKSEREELEHTQTFVSEFDT----------KIRSSQRGLLFSIIT------------------------------YLTVVFHQESTASTSATNPS------GGAQIRQEGLTRALIHVMEHVSSYGGHVASLTATLLSDVMNSDPHV-VSYIHESGIAKSFLSMVVGRRVKAGDSTDTYEPVLPPVPELVMAVPNVLSALSLTEDGAKVIYEINPFPSLMRIFYHPNYAMPKSRCLLNEITGIIGTGLDELMRHVERLKPLVMEAVANAMKDVVMYAEDLKKRENQFFFLSTSPLPDRGLE--DERSCLMQYVLNFGQLLEQLLHNDGHCEPFVNSGGLVALMQLFPASLPGGFQFLTHAS 972
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A7S4IYT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IYT2_9STRA)

HSP 1 Score: 260 bits (665), Expect = 2.290e-67
Identity = 288/925 (31.14%), Postives = 401/925 (43.35%), Query Frame = 1 
Query:  949 STSEGMFRRLTKE--HTAVPKRRLFSLLARVRSAVAWRGGVEARRAAVRRRIMALTALVYCHPSQEALMAYMSIQPELIQELVDLVRVRTDQAAQMT--------------------------------------------VPLDISVLAVHCLAALVHTRSGA---SSLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL--FIMPEQDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALSLGIAFVEAXXXXXXXXXXXXXXXXGGAPNADGGGVKEEKGTAGASSPVLSEMDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQ-------QGFGGMGKPFQ----------RRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSP---SQKALLFSLLNALSITFQNQ------------TQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTA---------TPAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDEL-----LKRELAGDSSA--EVLNERTL----MQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAVVEAGGMSATVA 3414
            STS+  F  L +    ++VP+ RLF LLA VR A ++    + R  A+  R+ AL A++  HP+Q+ +  Y + QPEL  EL DL+R     AA  +                                            VP  +  LAV  L ALV  R  A   SS+    + +    ELG+ +GQ+ GLLP LVR+ +ASL  F++          XXXXXXX          XXXXXXXXXXXXX        +SLG+AFV+A                   P               A +    E   L +V+ V +L  AVVSV  G +A+TECGLIPAL+  V L+ + +       + F G G   Q            +V +QAVQI+E A+V +  ALSAFRDLG  ++L     +E+  +R  G                                K++G  XXX         +                     VVA    P   GE                 P P   S++ LLFS++N L++ F  Q            T   Q  G+  L       A+ D+  N   +GGVL AL+ATL+SDV N DP   V Y+  SG+   +L +             P+ PPSSDL++ +PNVL AL LT DGA+ V+E++ FP+   +   PE   P+SR     M S+VG GLDE+MRHVP+LRP  I A+V  +K +V  G EL           G+SS+  +   ER L    + QYA+N GQLLE  L   E+  PF +AGG E  L L+ L VP  R LLA+ S                        ++A+     A+  +       ++ RL+  +L  L++ LD +    + +   GG    +A
Sbjct:   42 STSDLFFLALERAGGRSSVPRSRLFPLLAEVRLARSFHRRTD-RIVAIENRLRALVAVLQSHPNQDVVGGYFAAQPELCSELCDLLRPTVSSAAVSSGTGIGGGAAAHPDGLELRGLSGRLDSSRSAGRDGISAVSDPPPPVPYSVRTLAVEALTALVARRDPAGTGSSMYPALKQSATLAELGVGKGQFLGLLPALVRYSLASLNAFLLGRGSGEQGSSXXXXXXXTDAPMEEADGXXXXXXXXXXXXXAL-----GMSLGLAFVDAALRP---------------PXXXXXXXXXXXXXXXARTRAEEEERALEFVDVVLTLTSAVVSVPSGTSALTECGLIPALVGTVALDSNRRARLREESRSFTGEGGEAQWGRESYADVLLNFVTAQAVQILEGAIVTHGNALSAFRDLGGVDLLVRRLVSEIEDVRREGG-------------DEAPLGGSQAAEMKDERDKKDGDGXXXVAMEDADEKE---------------EKNPAAVVAVSSAPGASGE--------------KKHPRPMRASRRVLLFSMVNCLTVVFHQQETAANSGSNASLTAASQSSGTAQLHRPEFADALRDIMENVGSYGGVLAALSATLLSDVMNADPQV-VRYVHSSGLAKSFLNMFLTGGGEEDSPTAPSVPPSSDLIMAIPNVLSALSLTEDGAAAVKESDPFPSLLAVFVRPEYAMPESRCLLNEMASIVGTGLDEIMRHVPSLRPLVIDAIVGVVKRVVKLGKELDEXXXXXXXXGGESSSVSKPEEERELAMNHLAQYASNVGQLLEQLLHTEEHVGPFLEAGGLESALDLYPLLVPSGRRLLAQVSALSCPSVSSAAHTNMSGTLNLAIKNVASGGYGHAVAGS----SAGESHRLMGNILGRLEKGLDEVAGVMRELRSCGGDLPAIA 898
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A7S2L793_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L793_9STRA)

HSP 1 Score: 238 bits (606), Expect = 4.230e-60
Identity = 229/868 (26.38%), Postives = 358/868 (41.24%), Query Frame = 1 
Query: 1015 FSLLARVRSAVAWRGGVEARRAAVRRRIMALTALVYCHPSQEALMAYMSIQPELIQELVDLVRVRTDQAAQMT----------------------------VPLDISVLAVHCLAALVHTR-SGASSLGLVARHTHVFQELGITRGQYTGLLPLLVRHGVASL--FIMPEQDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAALSLGIAFVEAXXXXXXXXXXXXXXXXGGAPNADGGGVKEEKGTAGASSPVLSEMDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQL------NMDGQQGFGGMGKPFQR---RYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSP----SQKALLFSLLNALSITFQNQTQTHQQVGSDP-----LLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTAT-----------------PAPPPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNE----RTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAV-PGPRALLARASCAGXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGT-HDTARLLKRVLVALDRELDRLDAARKAVVEAGGMS 3402
            F+LL+ +R + A+      R +A++ R+ AL  ++Y   S E++ AY   QPEL  ELVDLVR     +   T                            VP D+  LA+  L ALV  R S A S  + AR  +V  ELG+ +GQY GLLP L+R  +A+L  F++ E                                           D  L LG+AF+ A                          +++E+               L +++ V +L   V+SV  G +A+T+CG+IPAL++ + L      N +         + +     +++ +QA+QI+E A+V +  ALSAF +L   +VL    S+EV  +R                                                                  K ++     VV               +D        + D  P    +Q+ LLFS +N L++ F +Q        + P     L +  L + ++D+  N + +GGV+ AL ATL+SDV N DP + V Y+  SG+   +L ++                    P   PS +L++ VPNV+ ALCLT  GA  V EAN FP    +L +P+   P SR     M +++G+GLDE+MRH P LRP+ +KA+V  +K +V  G     +E   + +A V ++    RT + QY  N  QLLE      +   PF  AGG +VLL L   ++ P  R L+A ASC                        L +  ++ +L+  +K + + +D  +LL+++  AL  +L  LD +  ++  A G S
Sbjct:  135 FTLLSTIRLSKAFYQNSNTRVSAIKLRLRALVTILYTLSSVESITAYFMAQPELCGELVDLVRPTVSSSGAATSSDGGVSXXXXXESESSNPILALADSPQVPYDVRALAIEALTALVARRDSPAGSFNIAARQANVLSELGVGKGQYLGLLPTLIRFSLAALNSFLLQED----------------------VNRGTEGQDDTNVDNNGDGDDTGLELGLAFIRATKPPPLPRK-----------------IRQERA--------------LEFIDAVLTLTSTVISVPSGTSALTDCGIIPALVSTIALDSQMTKNSNNSSSMEANEESYSNSLLKFITAQAIQILEGAIVTHTNALSAFHELKGVDVLVQRLSSEVENIR------------------------------------------------------------------KNSSAGDSDVVM--------------EDVQG-----MKDEKPRLQGAQRVLLFSAVNCLTVVFHSQDARAGANAAAPPGGALLRKPELMSVILDIMNNVESYGGVMAALVATLLSDVMNSDPQS-VHYVHSSGLAKSFLSLILGKENELKSVLGEDVEKWGEPIMEPSGELIMAVPNVVSALCLTEAGARVVAEANPFPTMLSVLCSPKYAMPNSRCLLSEMAAIIGSGLDEIMRHNPLLRPKIVKAVVQVMKRVVCIGKNRTLQEEGKNDTAIVADDLETARTQLMQYGNNITQLLEQLFHNEDYVSPFLSAGGFDVLLELARWSIIPTGRQLVAHASCLSNPSIAC----------------LTHSRSANSLSLVVKTIASSNDPQKLLQKISSALSTQLTYLDESMTSLRVATGDS 847
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A7S2K3K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3K2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.230e-36
Identity = 116/397 (29.22%), Postives = 175/397 (44.08%), Query Frame = 1 
Query: 1726 EMDQLRWVETVFSLVWAVVSVQHGAAAMTECGLIPALLNVVQLNMDGQQGFGGMGK-PFQRRYVVSQAVQIMETAVVNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKEEGKXXXXXXXXXXXXXKGXXXXXXXXGKAKGTTXXXXXVVATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAP-PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALV 2910
            E   L ++ET+ SL  AVV+V  G AAMT+CGLIPAL++V        Q F   G    QR+Y+ SQAVQI++ A+V + +A ++F +L   + L      E+  ++ A                                                                                                        + S + +L++++N L++ F  Q  +    G + L    LTAA+ ++  N D +GG+L+AL +TL+SD+ N DP   V ++  SGI   +L +L    A  PPS++L + +PNVL AL LT +GA  V E N FP    + H  E   P+S+    +MT++VG+G+DELMRHVP  R    +ALV
Sbjct:   41 EEQALDFIETMLSLTLAVVNVPSGTAAMTDCGLIPALVSV----FSASQPFYKNGHLDCQRKYIASQAVQILDAAIVAHTSAFTSFHELNGVDSLVKCLQDELEEIKQASGVGENAMEVEYQAQTRKL-------------------------------------------------------------------------------------TASNRVILYNIVNCLTVVFHQQEASSHPSGGNHLRTPALTAAMKELLNNIDSYGGLLIALVSTLLSDIMNADPQV-VHHVHDSGIAASFLAMLKGEKANVPPSAELFMAIPNVLAALSLTENGARIVCEHNPFPTLLTIFHDKEYAMPKSKCLLNDMTAIVGSGIDELMRHVPNSRLLATRALV 347
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: A0A1V9ZKE2_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKE2_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.540e-30
Identity = 113/355 (31.83%), Postives = 180/355 (50.70%), Query Frame = 1 
Query: 2371 QKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVL------TATPAPPPSSDLLVTVPNVLHALCLTHDGASRVQ---------EANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAVVE 3387
            ++ L  +LLN LS++F +Q        S  + + A L+  +  +  N D++G +L A  ATL+SD+ N DP T+V ++  SG+ D +LK L      T+  A PPS +L++ VP+VL ALCLT     +V          +  V PA+  + H  +S+       +G++ S+VG GLDELMRHVPA +   I A V +L ++    DE    +LA D +   +   T+      +   +LE+ + + E+A  FA+ GG + LL+L+S  +P   A LA  + +                    Q SLA++ A+Q LT A +A        +L ++L  +D  L+RL  A  A V+
Sbjct:  551 KQILAITLLNMLSVSFHSQGVMSAGATSRAIRDGAPLSKVLHAILTNIDVYGPMLFAQAATLVSDIINNDP-TSVNHVHASGLADAFLKTLCRWDLITSANALPPSPELVIAVPSVLSALCLTSTHVEKVVGYEPLAYLLDMFVMPAYV-LYHGYDSL-------QGDVASIVGGGLDELMRHVPAFQKPAIDACVRALHKIQTYADE----QLATDETHSAVLRMTM------HVCDVLETIVAKAEHATRFAELGGVDTLLALYSRILPSTSAFLATVTQS-----------------HESQASLAHYPAAQGLTVAARAYAGQQPTTMLSKILKQMDAHLERLPTAGIAAVD 869
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Match: G5A9Y3_PHYSP (UBA domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A9Y3_PHYSP)

HSP 1 Score: 138 bits (348), Expect = 3.580e-29
Identity = 106/352 (30.11%), Postives = 178/352 (50.57%), Query Frame = 1 
Query: 2362 SPSQKALLFSLLNALSITFQNQTQTHQQVGSDPLLE-AFLTAAVMDVFRNSDMFGGVLVALTATLISDVANQDPSTTVAYLLRSGIVDEYLKVLT----ATPAP-----PPSSDLLVTVPNVLHALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYP--EGNMTSVVGAGLDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNERTLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRALLARASCAGXXXXXXXXXXXXXXXXXXXQHSLANHAASQALTSAMKALGTHDTARLLKRVLVALDRELDRLDAARKAV 3381
            S ++  LL ++L +LS++F +Q        S  + E + L   ++ +  N D+FG V+ A TA ++SDV N DPS+ V ++  +G+ D +LK LT    A   P     PPSS+LL  VP VL+ALCLT   A +V +         +   P+    +++    +G+  + VGAG+ ELMRHVP+ +   I+A V +LK+++  G+E  +   +   +     +R ++ +   +   LLE  L + E+A  FAD GG  +LL+L+ L +P   + L  A  +                    Q S A++ A Q++T A+++  +     LL  ++  L  ++D L  AR  V
Sbjct:  555 SETKTVLLLAILASLSMSFHSQGVMSAGATSRAIREGSALNKVLLQLLSNVDVFGPVVFAQTAVVVSDVINNDPSS-VNHVHAAGLADAFLKTLTRWDIAELYPSRILLPPSSELLTAVPTVLNALCLTTTHAEKVAKYEPLMHLLDVFALPQYTEDEAKDYCFQGDTAAAVGAGIFELMRHVPSFQNAAIQAAVHALKKVIRFGEESKQTTTSSAENIAGDKDRGILIRMTTHVADLLEPLLSKSEHAAYFADLGGIRLLLTLYQLILPSTSSFLDGALPSNKATKTGSP-----------QSSFAHNPAVQSITLALRSYASQQPTNLLAAIVKELSLQMDSLQRARAKV 894
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2U3_ECTSI7.170e-27090.32DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5LD86_9PHAE3.060e-25783.96DUF913 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G2U4_ECTSI6.170e-12689.33DUF908 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A448ZD07_9STRA2.270e-8427.90HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-... [more]
B7G082_PHATC6.520e-7027.36HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S4IYT2_9STRA2.290e-6731.14Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2L793_9STRA4.230e-6026.38Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2K3K2_9STRA1.230e-3629.22Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A1V9ZKE2_9STRA3.540e-3031.83HECT-type E3 ubiquitin transferase n=1 Tax=Achlya ... [more]
G5A9Y3_PHYSP3.580e-2930.11UBA domain-containing protein n=1 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:43651..58120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score786.6
Seed ortholog evalue1.6e-224
Seed eggNOG ortholog2880.D7G2U3
Model size3500
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons20
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-16_001510.1
EC2.3.2.26
Cds size3498
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.777.1prot_Ecto-sp6_S_contig101.777.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 43651..58120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.7232146-CDS-Ecto-sp6_S_contig101:43650..437551682348728.7232146-CDS-Ecto-sp6_S_contig101:43650..43755Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 43651..43755 -
1682348728.7349355-CDS-Ecto-sp6_S_contig101:43964..443721682348728.7349355-CDS-Ecto-sp6_S_contig101:43964..44372Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 43965..44372 -
1682348728.7455897-CDS-Ecto-sp6_S_contig101:44541..446011682348728.7455897-CDS-Ecto-sp6_S_contig101:44541..44601Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 44542..44601 -
1682348728.753223-CDS-Ecto-sp6_S_contig101:45152..453141682348728.753223-CDS-Ecto-sp6_S_contig101:45152..45314Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 45153..45314 -
1682348728.7603016-CDS-Ecto-sp6_S_contig101:45615..457721682348728.7603016-CDS-Ecto-sp6_S_contig101:45615..45772Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 45616..45772 -
1682348728.7679148-CDS-Ecto-sp6_S_contig101:46736..469151682348728.7679148-CDS-Ecto-sp6_S_contig101:46736..46915Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 46737..46915 -
1682348728.7751997-CDS-Ecto-sp6_S_contig101:47545..478151682348728.7751997-CDS-Ecto-sp6_S_contig101:47545..47815Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 47546..47815 -
1682348728.7824602-CDS-Ecto-sp6_S_contig101:48423..485791682348728.7824602-CDS-Ecto-sp6_S_contig101:48423..48579Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 48424..48579 -
1682348728.7895803-CDS-Ecto-sp6_S_contig101:48908..490401682348728.7895803-CDS-Ecto-sp6_S_contig101:48908..49040Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 48909..49040 -
1682348728.7966628-CDS-Ecto-sp6_S_contig101:49724..498511682348728.7966628-CDS-Ecto-sp6_S_contig101:49724..49851Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 49725..49851 -
1682348728.8037279-CDS-Ecto-sp6_S_contig101:50450..506831682348728.8037279-CDS-Ecto-sp6_S_contig101:50450..50683Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 50451..50683 -
1682348728.8109896-CDS-Ecto-sp6_S_contig101:51177..513941682348728.8109896-CDS-Ecto-sp6_S_contig101:51177..51394Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 51178..51394 -
1682348728.8182445-CDS-Ecto-sp6_S_contig101:53115..532691682348728.8182445-CDS-Ecto-sp6_S_contig101:53115..53269Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 53116..53269 -
1682348728.8325396-CDS-Ecto-sp6_S_contig101:53580..538181682348728.8325396-CDS-Ecto-sp6_S_contig101:53580..53818Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 53581..53818 -
1682348728.8452952-CDS-Ecto-sp6_S_contig101:54205..543941682348728.8452952-CDS-Ecto-sp6_S_contig101:54205..54394Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 54206..54394 -
1682348728.8533735-CDS-Ecto-sp6_S_contig101:55184..553401682348728.8533735-CDS-Ecto-sp6_S_contig101:55184..55340Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 55185..55340 -
1682348728.8623042-CDS-Ecto-sp6_S_contig101:55677..557821682348728.8623042-CDS-Ecto-sp6_S_contig101:55677..55782Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 55678..55782 -
1682348728.871324-CDS-Ecto-sp6_S_contig101:56172..564401682348728.871324-CDS-Ecto-sp6_S_contig101:56172..56440Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 56173..56440 -
1682348728.880764-CDS-Ecto-sp6_S_contig101:57014..571151682348728.880764-CDS-Ecto-sp6_S_contig101:57014..57115Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 57015..57115 -
1682348728.893812-CDS-Ecto-sp6_S_contig101:58039..581201682348728.893812-CDS-Ecto-sp6_S_contig101:58039..58120Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 58040..58120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.777.1

>prot_Ecto-sp6_S_contig101.777.1 ID=prot_Ecto-sp6_S_contig101.777.1|Name=mRNA_Ecto-sp6_S_contig101.777.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1166bp
MRIRASSGAGGVGQPEPRLSRELEPLKRAILEAKTDAELIAALKLVKGED
EWEEQPDLYDWCDVLDRMDETLETNMLRHPSLLLIQPADHQQQKKPPATG
AGGGGDAGGDGSEDTAVATAAAGEVVLCCLNFLAVLMRSCVNKHVFSSAE
HLRSLLAAGDDAVAESALRCLMLLTVPPLLHRHQQPELHSMCSIHKDKAV
SAELMTLSGGWGGRGQGLGLLACVTGRVEGEAKVSGRYAPSQGTDEAAAA
GAEDDADGADDGSSPSGSGQGGGAGGREKEEESNRAPSPGGYTRFRTIFV
PARVGGPPAGEAGDADSTSEGMFRRLTKEHTAVPKRRLFSLLARVRSAVA
WRGGVEARRAAVRRRIMALTALVYCHPSQEALMAYMSIQPELIQELVDLV
RVRTDQAAQMTVPLDISVLAVHCLAALVHTRSGASSLGLVARHTHVFQEL
GITRGQYTGLLPLLVRHGVASLFIMPEQDAAAAAAAGAAASAGRSDGDSG
VVESKSSDPGDGKSPPPPPPDAALSLGIAFVEAAGAAQSKGRRDGGSGGG
GAPNADGGGVKEEKGTAGASSPVLSEMDQLRWVETVFSLVWAVVSVQHGA
AAMTECGLIPALLNVVQLNMDGQQGFGGMGKPFQRRYVVSQAVQIMETAV
VNNAAALSAFRDLGAAEVLASAFSTEVGRLRDAGAAAAAAAAAAAAAGDN
RGGGGGGSGMVVDDEGKEEGKGKSKKPPSSSKTTKGKGKGRDKDGKAKGT
TSSSSAVVATGGGPDRVGEGGAGDDASAAAGGPLADPSPSQKALLFSLLN
ALSITFQNQTQTHQQVGSDPLLEAFLTAAVMDVFRNSDMFGGVLVALTAT
LISDVANQDPSTTVAYLLRSGIVDEYLKVLTATPAPPPSSDLLVTVPNVL
HALCLTHDGASRVQEANVFPAFFRMLHTPESMHPQSRYPEGNMTSVVGAG
LDELMRHVPALRPQCIKALVSSLKELVGKGDELLKRELAGDSSAEVLNER
TLMQQYAANFGQLLESALGRPENAKPFADAGGDEVLLSLFSLAVPGPRAL
LARASCAGGGGGGTTSSSSSSSSSSSQQHSLANHAASQALTSAMKALGTH
DTARLLKRVLVALDRELDRLDAARKAVVEAGGMSATVASASGSSGGGGGG
DAMDVDSEAPPAAVKS
back to top

mRNA from alignment at Ecto-sp6_S_contig101:43651..58120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.777.1 ID=mRNA_Ecto-sp6_S_contig101.777.1|Name=mRNA_Ecto-sp6_S_contig101.777.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=14470bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:43651..58120- (Ectocarpus species6 EcLAC_371)
ATGCGTATTCGGGCATCCTCCGGGGCGGGGGGGGTGGGCCAACCCGAACC
TCGCCTCTCTAGAGAACTGGAGCCCTTGAAGGTAGGGCATGCTCGCCACG
TCCTACTACTATTTTGTTCAAAATGTTATTGTTGCTGCCTCAATCGCTTG
TGAACTACCGCTGCTGCTACTTTTACAACTTACGACGGCTGCTGCTGCCA
ATGCTACCGCTACTAGCACAACAACTGCCCCCCCCCACACCGGCGAAGTA
CTTCTGAGCAACGGGGGGCACGGGCAGTAGGGGCATCGCTAGACAGCAGT
AGTGCCTGTGGTTTGTTACAAACCGTCTGCCGTCGAACGACGTGCGGGTG
TGACCTCGACGAGGACAGGCGCGGAGCGTGTGCACGGGCGTGATTGTTGT
ACACGAAGTAGGATTAACATCTTGGAACGCGGTTGTTTTTTTGCCTTTGG
TGAGACTGCTAATGTTGTTTGTGAGTACGCAGGGGGAAAAAACGGTAGCA
CCCGGGCCTTGATGAAGCCTTGAGGCGAAATATTGGGTTCTCGCGGTGGC
GCCGCTTTCTGAGCCGGCCATCTGTCAACGGGCAGACAGATGCTCACGCC
CAGCGCTGTTCCCTAATGCGAGTCCAAAACCGAACTCTGGCTGTGTGCTG
TACCGGACTTGGTGTTGCGGTTTCGCACACTCTTGCCCTGAAAATGCCCT
TTAAAGTTCTCAAAAGAGTCTCCTCAGCAGCCTCTCGTTGTTTTGTGCCG
CCTCTACCTTCTGCTACATGCCCTCTAGAACCCATCCCCTCTTGGAAGTG
ATGTGTTCGCGATCGAAACATCCGTGTGTTTTTCGTTTCGCCCAGCGCTG
AGACAGAAAAGGCGCTAACCTATCTTAGACTCTTTTCTTAGATAGAGATG
GACTCGTTGGGTCACATGAGGACAATAAAAATAAAAGCATTAGTGGAAAT
CGCGCATTGATTGTTGTTTCTGTGTGATGCTCGCGCGAACCGACATTATT
TCTAGCGCGCCATCCTCGAAGCCAAAACCGATGCGGAGTTGATCGCCGCG
TTGAAGCTGGTGAAGGGGGAGGACGAATGGGAGGAGCAGCCAGACCTCTA
CGACTGGTGAGTGGCGCATCGGTTGGTGGTGGTGGTGATAGTGCACCCGC
ATGGTAGGTGATGTGTGGGGTCCCAGAGAGAGGGGTCCCAGAGACCATGG
AAGCTTTTTTTGGACGGTGCCGGAGTGGGTGGTGTTTGTTTTGCGGTGGA
GTTCTCCTAATTTATGGCATTTCAGGCTTTTTTATTTGCGTGGTATGCAT
ACGAATGCATATATAGGCGCAAGGCGCTAAGAGAAAGGGCCGTGCTGAAG
TACGCTTGTTGGTATCACCCGCGCGAAAAATAAAAAAGCTCTCTTGAGAA
ATATAGCAAAGCCCTTGGGACCGTTCAAGAATAATCCTCTTTGTTGTAAA
ATGGGCCGATGAACGCAGTCAGTGCTAACGACCACGCAAGGCGCGTGCGC
ACTCGCTAGAAAGCGTGCGTTTTTCTTTTTGGTTTTGTTTCCGCTGAGGC
CGATTTATTTGCAGCTGCTGCTGCTTGTTTGCTTGGCCGACGCTACATAA
CTTCATGGAAGACTCCCCTCCCCCGCTAATCCTACCCCTTCTAATGACGG
CGCACGAACAACACCTCGGCTGGGTGTCAGGTGCGATGTGCTGGACCGAA
TGGACGAGACGCTCGAGACGAACATGCTCCGCCACCCGTCACTGCTGCTC
ATCCAGCCCGCCGACCACCAGCAACAGAAGAAGCCCCCCGCCACTGGTGC
TGGTGGTGGCGGGGATGCTGGCGGTGACGGTAGCGAGGACACAGCGGTGG
CGACAGCGGCGGCGGGCGAGGTGGTGCTCTGCTGCCTGAACTTTCTGGCG
GTGTTGATGAGAAGTTGCGTCAATAAGCACGTCTTCAGCTCGGCCGAGGT
GCGTGCGTGCGGTGGTGGTGGTGGTGGTGGTGCTACTTCTTTCTCGGTCC
TAGCTCTCCCGGTCCCAATCCTACGGTTGTTGCTGTGGTACTGCGGGCAG
TGGTGATCGTGGTGGTACTACTTTCTCGGTCCTAGCTCTCCCGACCCCAA
TCCCGCGGTGCTTGCTGAACTACGGCGTGCGGTGGTGGTGGTAGTGGTGT
TGGTGCTACTTGCTCAGGTTTACATTGCTCTCCCGACCCCCAATCCTGCG
GTGCTTCCTGAAAATACTCAAACCTGCTTGTGCTCGCCCCTGCTTGTCGT
ATTTCTTCACCCCTGTTGCCGCCGCTCGGTGCAACGCGTGTGCCGCTAAC
TTTTTGTTTTTCGTGTAATTATGTTGTTTATTTCGCAGCACCTGCGCTCG
CTGCTAGCTGCTGGGGATGACGCGGTGGCGGAGAGCGCGTTGCGGTGTCT
CATGCTGCTCACGGTGCCGCCGCTGCTTCACCGGCATCAACAGGTGATGA
CTTTACTTTGAAACGTTGTTGGGTGTCCATTTGTTCCGCATAGACTCGGC
TCACGTTGTTGGTGGTTGTGATACTCTCTTGCGACGTAGTTCCACTTGAT
TTGTCCCTCCGTACGTATGTGGACTCCCCCCTACCTCTTGCCACCACTCG
GGGGGACCTGTGGCCAAGAATCCAACGGTGCCATACAGTCATGAAACAAA
CGAGGACCCCCCCTCCCCCCGCAAAACTCGACCGTATGGTCAAAAAGATC
ATGACGTTGTTTATCCATGGGTTACTCAACCGGTTAACCACCTCTCCCTT
CCCTCGCCCCGAACCCGAACACCACCACAGCCGGAACTCCACAGCATGTG
CTCCATCCACAAGGATAAGGCGGTGTCAGCGGAGCTTATGACCCTATCCG
GCGGGTGGGGTGGGCGGGGTCAGGGGTTGGGCCTGCTGGCTTGCGTTACG
GGGAGAGTTGAGGGCGAGGCCAAGGTGAGCGGCAGGGTGTCGAGTATGGA
TTGCGGGGGGGGGTAGAAGTGCCCGTGATGGAGTACTCATGTTTTGCATG
CCTTTGCATCGGTTAGACCGTTGACCACGCGAGAGGACGGAAGTGCCCGT
AGCGTGGAAGAGAAGACAACAAGAGTGCTTACTAGTTAAGAGACATTGAT
CGATTTCGTTGATTGGTTAGAGACATTGATCGATGTCATTGATGTGATTG
TTGTGGTGTTGTGGTGCGTCCTTGTTTTCGAGCCGTTCCCACCTCTCCCT
ACACGGCGGGGTGGCCGATTGAAGCTTTTCACTTTGTGTTTGCTGCTACG
ACCCTGAGTTGTAAGTAAATATTTACCCTGGGTTTTGTACTCTGGTTTGT
TGTAGTTAAATAGTTGTTGTATGATGAGGACGTTGCAGTTGTTGTTGCTC
CCACGCACAACAAATGTTGGGTTGGCGGTATTTTTTTGTTGTTTTGCTGA
TGCTTGTTGTTGCGGTGACGTTTTTTTCGTTGTCCCATGGTAAAGAGTGT
GGTGTTCCTTTTTTTAGCCCATGTTTGTTGTTGTGGTCATGTTTGTCTTG
CATGTCGTGTAAAGAGAACGGTGTCCGTCATAATCCCCCCCCCCCCATCT
CTCTTTCCCCTCGTCCTCTCCATCTTTCTGTTGTCTTGTTGGATGTCCAG
GATGAGAGTGACGCCGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCTTCGACGAAGAAGCCGAAACCCACGTCCATCCTACCCG
TCAACGCGGGCGACCTGTGTTTCGAGTACGCCCCTTCTCAGGGCACGGAC
GAGGCTGCTGCTGCTGGTGCTGAAGATGACGCTGACGGTGCTGATGACGG
GTCTTCTCCCTCCGGCAGCGGGCAGGGGGGGGGGGCAGGGGGGAGGGAAA
AAGAGGAGGAGAGCAACCGCGCACCGTCGCCCGGGGGGTACACGCGTTTC
AGGACGATATTTGTGGTGAGAGACTGGTACAGAGGCATATGTTTGTGGGG
AGAGACGAAGTAGGCGTACCTCTGTGGTGAGACTGGTAAAGACGCGTATA
TTTGTGGTGAGAGAGGAGAGACTAGCTAACGTGGCATACCCTCGTGGTCA
GACAGACAGAGAAGGAGAAAGACAGAGACAGAGACAAAGAGAGAGAGAGG
CTAACGAGGCACATTATATTCGTAAATGTATTTGTTCTTTGTGTCGTTGG
TGGTTTTGATTCATTGTTGTTTTGTCTTTTTTGTCTTTTGATGCTGTCGT
CTCATGTACCCAATGCGAGACCACCGCCCCCCCCCCCCCCCCCTACCTCC
CATTTTCTGCTGTCGGAAACTAAATTCGCATGACTGGCCAACGATTGCAC
AGCCGGCGAGGGTGGGAGGCCCACCAGCAGGCGAAGCGGGAGACGCAGAC
AGCACCTCGGAAGGCATGTTCCGGCGATTAACCAAGGAGCACACCGCCGT
CCCGAAGCGGCGGCTGTTCTCCCTCCTGGCGAGGGTCAGGAGCGCCGTGG
CGTGGCGGGGGGGGGTGGAGGCTCGGCGGGCCGCAGTGCGGAGAAGGATC
ATGGCGCTGACGGCGCTGGTGTACTGTCATCCTTCCCAAGGTAGGGGGGG
GGATCCGTAGGGTTCTAGAGCCGATTGAGTGATGGATGTTTGCGCAGGGG
CTCCGAGGAAAAGTGAGACGAAGTTCTAGAGTCGATTGCTGGGGAGGGCT
GGTTGGGGGGGAGGATGGGTGTGGATCGGAGAGGGTACAGAACGGGTTGC
GGGGGGGAGGGTGGTGGTTCGGCTGGATTCGATTCGATTCCTTTTTGAAG
CCCGCTGAGTAATCTCCTTGTGTTGCTCGTCGATGAGTCTGTCTTGTCTC
GCTGTCCCTCTGTCTCTTGTCTCTGTCTTCCTGACTGCCTTTCGGTCGCA
GAGGCCCTCATGGCGTACATGAGCATCCAGCCGGAGCTTATCCAGGAGCT
AGTGGATCTGGTCCGCGTGAGGACCGACCAGGCGGCGCAGATGACGGTCC
CGCTCGACATCTCCGTGCTCGCAGTGCACTGCCTGGCGGCGCTGGTGCAC
ACGAGGTATGTTTTGGGTTACCGATATGTTCCCTTGTCGATGTTGTCCCC
GGTGCTGCCGCGTGTGTTCAATGATCGGGCCCGACGTAGCTTTTGCTGCT
GCTGCTGCTACTGCTGCTGCTGGAGCAACAAAATATACCTATATCTAGAA
TGGTCTCGTTTCGTTTCAGGCCGGTTCTCTCTCGTGCCTCCGATTATTTT
TTTTTTCGGAGTCTACGTTTAAACCGATTCCTGTCGGTTCTTTCGGCTCC
CGGACGGGAATAGTGTAGCGGGCACGACCCGAGAGTATGACATCATGCGG
CGAGCTGTGTCGAGAGCTACCCGCGCCGGACTGCTAGGGATGTTGTTCTG
GAAATCAATATTTTTTTGTTCTCTCTGGTTCTCTCCCCGGGTTTGTATGA
CGTCATACAAGTAGTCAGCTATGGTCGTAGTGAACGAAGCGAGTCACAAC
ATAGCATATGTACGTATTAGCAGCATATCTCTACCTCGCTCATAACTGGC
AGGTGTCTACTTCCCACAACTGTCAGTCTTCTTCCGTTCCTGCAGCTCCC
GGACGGGGATGATGTACGCACAGCGCGCCCCGCGCGTAGCGCGCCTGCTG
TGTGCACTGCTGTGAGCCACGACAGCTACCCGCACGGAGACTTGATACTT
TCTTCCCCCAAGTACATCACAAGTGTGTTTTCTTTCTCTGTCGATCCGAT
TATGTTTCGGGAACGAACTTCAACTCACGTGTCAAGGAAATCTGTACCAG
GATGTATCTAGCTGTACCCCCACCTGAACATCATTAACACATACTACTCG
TCCGTATGCATATACCGCCAAGAGTCGGAGAGATGGCACCCCCGTGTTAG
CATATGTTTGTAGCGTATTTCTCCACAACTATTGTAGGAGGGTGCGAACA
CCAACCGATACCTCTCAGGAAAGCCCTCGACGAGATGTTTCCAATACTAC
CCTTTTCGGCAGTGGTACCCCCCTGGTTGTGGAGAAATACGCTATACAAA
AACGCTAACACGGGGGTGCCATCTCTCCGACTCTTACGGTATCTACCTCT
TGTACAGCACTCACGATATGGTACACAAGCACTTTAAGCCATGGACGGTT
GTGTGTGATGGACTACTGCTGTAACACTGCTGATGCTCTAGAGCCAAGCG
GGAAACATGTCGTGAAGTTGGGAGATACCACAAACAAGCGCAGCTTGCTG
GGTTTCGAGGCCGTCTATCTGATGTTGCTGCTGCTGCATTCATTGCTGTA
GTCCTATATGACCATAGCATCAGACAGAACAAACAATTTTGGCCCACACA
CATGCGGAATCACCATCTCGTGTGGATGTGTGCCCCGGGATCAGCGCTGT
GCAAAAACTTCCCGCACCACATGACCAAGCGGTGACTGACGCACTTCTTC
TCAGTATCCGACTGCGACCCTTCGAACCTGCATCTATCCTTCTGTTGCTG
TATGCACCGGAGGCGTGTATCGATACAGCAGTATCTTTCCGATCCTCGAT
CAACTTACACCACTTACCCGATGTGCTCGACAACTATTTACACAGCTGCT
TGTACCTTCAAACACTTCCTTTCATTCTCTTCCTACGAGTTTTACGCGAG
ACCGGTCCCCATAGGGGGGGGATCGAAACAGCCCTCGTATTTTGATGTAT
ACGGAGTATATGGCTACCGCCGCTGATTCTACGGCCGCCGCCGCCGCCGA
TGTTGCTGCTGCTGCTCTGGGTTCAGGAGCGGAGCGTCAAGCCTGGGGCT
GGTTGCCCGACACACGCACGTCTTTCAGGAGCTCGGCATCACGAGAGGGC
AGTACACGGGCTTGCTGCCGCTCCTCGTGCGTCACGGAGTAGCCTCGCTC
TTCATCATGCCGGAGCAGGATGCCGCCGCCGCCGCCGCCGCCGGTGCTGC
AGCCAGCGCTGGAAGAAGTGATGGCGATAGCGGAGTTGTAGAGGTAGGTC
TTCTTTTTTTTTTGTCTGTGTTCATCACTTCAATGGGCCCTTACAGCATT
CGTATCTATATTTTTTTCCTACAAAAACTGGAGAAGTGAGATTCAGTTCT
CCGAAATTCATCGAGCGAGGGGGGTGGAAGGCCCCACCGACCAACTTGAT
ATTTTCATGCTCATACATTCCGACATTATTTCCACAATAATAGAACTTGA
GGGAGGCGGGGGGGCCAACGAAACACGTTTGGCCGCACACGATAACATAT
AGGTGTATGCTGTCCGTCTCTTCGCAAGACATCATGCCGTGCAGTGAGCG
AGCGCTGGAGAATCAACACCAGGACCCGCATTTGCGTTGCTTCTCGATCG
CTGCTATTGACCCTTGTGTTGTTGAGCTTCGGTCTCCGAAACGAACAGCC
CCTTGCTTTTCTCCGCAACAGCAGTAGTTGTCACCTCGTGCACAAGCCAC
AGATCCATAACACGGCCGCCATACCCCCATGAATCAGTCCAAGTCGTCGG
ACCCCGGGGATGGGAAGTCGCCGCCCCCGCCCCCGCCAGACGCCGCCTTG
TCGCTCGGCATCGCCTTTGTGGAGGCCGCAGGCGCGGCCCAGTCGAAGGG
GCGCCGCGATGGGGGTAGCGGCGGGGGGGGTGCTCCTAACGCCGACGGCG
GGGGGGTCAAGGAGGAGAAGGGGACGGCTGGCGCGAGTTCTCCAGTTCTG
TCGGAGATGGACCAATTGCGGTAAGTAAGATTGATACCGTGTTGTGGTTT
GTTGTTGTGGGATTTTTGTTTGGAGTGGGGTTGCGTGGCAGGAGGGGGGG
TGGTCGAGCGGAGCGGTAGGGGGGGGGAGGAAGGTGTACTCATTGTCGTG
CATGCCGTAGTCGTTAGACCATTGATCTCGCACCCCTACAAAGCCAGGAC
GGAGCACGCCGGGTTCTCACGGGACCAGTAGCGGTACGGGGATGGGGGGC
GTTTCCTCAAGTATGACGTCCTGGGTAGACCCGGTTCGTGTGCGTAGGCT
CCTTCACGTCTGTGCCTCGGGCTGACTCATCCAGCAAACTTGCCGAAAGG
TGTGGTAACAACAGTAACAACGTCGAAAAGAGATGGGACGGCATATGAAA
AAAACAGAGCGTGTCCATCCGCGTTGTTTGTGTCCTTTAGAACGGCTGGC
CACGTCTTCGTCGGGCAGCCGGCTACGCTAGAGCGGTCAATGGTGGCCTC
TGCCTGTTTCCACTGCTGTCTTGTCTTTTTTCGTTTTTATTCCGTTTGTT
TTGATGGCCCGTGTTTCTTTGTTGTTCCTCTCTGGTTGCTTGTTTGTGCG
TTTCGTTGGTGCATTCCAGCTGGGTCGAGACGGTGTTCAGCCTGGTGTGG
GCGGTGGTAAGCGTGCAGCACGGGGCGGCGGCCATGACCGAGTGCGGGCT
GATCCCGGCCCTCCTCAACGTCGTACAGCTCAACATGGACGGACAGGTGG
GACTCCGACTGTGTGCTTGTCGTGAAGGACACGGTTTATTTTTGGTGGGG
ACCCGCTGCCGCGTCGTCCCTCGTGTTTGGTGTTTCCATACCGCTGTACC
GCTGGGTCCAGACCCAACCGCGACCCCGCGTGCTTGGTGTTGACAGTTAC
CGTTGACTTGAGAGACCCACCCCATGGCCGTACTTTGTGTTGCGTTGCCG
TTTGGTGAGACCCACCCACTACAGTTGTGCTTCGTGTTGAACTTGCCGCT
GACTTGCGAGACCCACCCCAAAGCCGTGCCTTGTGTTCAGTTGCCGTTTG
TTGGAGACCCACCCACTGCAGTCATGCTTTCGTGTTAAGATGCCGTTGGT
TTGAGCCCCCACCCTCGTGTTCTGGTGACTGCCATAGGTATTGATTGCGT
AAGATATCACACCCCCTGGGCCGATTTTCACAGCTCGATTACTCCACGAC
GAAGAGGATGCCGAAATTGAGGCATACGTTTTCGGAATAGCTCTCGACGA
TACGTTTCCAACGCCGCCATTGTCGGCACCGTCACTGCTTCTCCTGTCGA
GATATGGAGCTTCGAAAGTTGGTCCAGGGGTGTGATATCTTACGTCATGT
CACCTACGGTACCGTCCTCACCAACGTCTTGGTGATTTTTTTTTGTGTCC
TTTGGTGACGTGTTGCTTTCTTTGATCAAGCAGGGCTTCGGCGGCATGGG
CAAGCCCTTCCAGCGGCGGTACGTGGTGTCGCAGGCCGTTCAGATCATGG
AGACAGCGGTGGTGAACAATGCGGCCGCTCTCTCCGCATTCAGGGATCTC
GGCGCAGCCGAGGTGCGTCGGCATTCTTGTGTGTTGGTAGCATACGCGCA
GGCTGTTCCTTCTTTTTCCGTTGGCTCATTTGTTTTCAGTGCTGTCGACC
CTCTCTTTTTAATGATGGTTTGTTGGTCGTCGAATTTTCGCTGCTGCTGC
CTCCGTTCGTTGGTGGTCCTTGATTCGTTTTGTTTTTTTTTTCGGCGAGC
ATTTTTTGTTGTCGAAGTTTGTTCTTGTGGTCCTATTCTTGCCTATATAT
TTCGTTCGTTCATTGTGGTACCTCTCCGTCTTGTCTCTCTTCCCCTCCCC
CCCCCCCCTCTCTCCCGCCTAAACTGCCGGTACAACGACAGGTGCTCGCG
TCCGCCTTTTCCACTGAGGTTGGAAGGCTTCGCGATGCCGGGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAGATAACCGTGGTGGTG
GTGGTGGTGGTAGCGGGATGGTGGTGGACGACGAGGGCAAAGAAGAGGTC
CGACTTTTTTTTTTCTGTATTTTGGGAACGGTAAACACCAGTCATTTGTT
AATAACGAGATGGCGCGAGTTGATTAGAGAAACCCTGTCAGTGTTCAAGG
TGTTGACTACTGTTGTGTTGAAACGGCGCTTGGTGAATGAAAAATTGCCA
AGAAAAAGGCCTGCTGCTGTTGTAGACCATCTTGCTTGCAGGTGCAATAA
TTGAGAACAGCGTCCCCCAAAAGGACTGTTTTATTGTCTGACTACTGATG
TGTTGTAAGGGTTGTTTCCGGGTTGGCATTCAAGGGGAGGGGGTTCGTTG
GGGCGGGGGGGAGTGATGCATCGTTGAATCAGACCAAGTCCTCGGAGATG
GTACGTGACTTGATTGGTTGCTTTTGGGGTTGGCCTGAGTGGCGAACTTG
TCGTGTCGTGGTCTTGCTTTCCCGTTTTGCGTCTCTCTCGTCGTTGCTCT
ACTGTTTAACCCTATAGGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCCCTCTCCTTCTCC
CTCTCCCTCTCTCCTCCTTCTCTCGGACTCGCAACTCCCTGTACCCCCCT
CACAGGGCAAAGGCAAGAGCAAGAAGCCGCCCTCCTCCTCCAAGACCACT
AAGGGTAAAGGCAAGGGTAGAGATAAGGACGGCAAGGCCAAGGGAACCAC
CTCTTCCTCCTCAGCTGTTGTCGCCACGGGAGGCGGTCCCGACAGGGTCG
GGGAGGGGGGCGCAGGGGACGATGCGAGCGCGGCGGCCGGTGGCCCCCTG
GCCGACCCGTCTCCGTCGCAGAAGGCACTCCTCTTCTCCCTGTTGAACGC
CCTCAGCATCACGTTTCAGAACCAGGTGCGCCAGGCGCAAAGCGGAGGGA
AGGTTTTTCCAAGAGCTTGTGAAGCTAAACGTTTACTTTGGTAGCCAAAA
GCTTGTTGACCTAAACGTTTTGTTAGCCGAACGCTTATTTAGTAGCCGGA
AGCTTAGTAGCCAAAAGCGTAGTAGCCAAAAGCGTAGAAGCCAAAAGCTT
TGCCAAAAGTTTTGCCGAAAGCGTTTGTTGAGCCAAAAGCGAAGAGTTTG
TTGGGATTCGGTCGTGCAACCTCGGGCGTAGCGATGTGCATGTTCACGTT
GACGATGCGAAAAGTGTATGTTTATGTTGATGGTTGTTTTCAGTTGTACC
TCATGTGCTTGATCGCCGTCCGTGTGTCCGTTACCCCTCTACCGACTCCC
TCCCCCCTCGGTGGAAACCTAGGTGTTAATTTAATAGCGATTCATTTTTT
GTAGGCATGCGAGTTCTCCAGGCGTGATTGAATATTATCGTTACAGGACA
TAGTTTTCCAGGTGTACAGGTTCTGCAGTCGGAAGACAAGACTATACCTA
CCCCAGGCATGCAACTTCAACATTTGTTGATCCCCTCCGTTTCCGTTAAA
CATTTTCCTCACACATGTCCACCCCTTGCTTTTTTTTTTTTTTTTTTTTG
CGCAGACCCAAACACACCAGCAGGTGGGGTCAGACCCCCTGCTGGAGGCG
TTTTTGACGGCGGCGGTCATGGACGTTTTCCGCAATAGCGACATGTTCGG
GGGTGTGCTGGTGGCGCTGACGGCGACCCTCATCTCGGACGTGGCCAACC
AAGACCCCAGCACCACTGTGGCCTATTTGCTCAGGTTTGTCTTGTTCACG
TTGTTGTTGTTGTTGTTGTTGTCGTCGTAGTCGTCGTGGCGATGGTATCG
TTTGTCCGGTTGGTTGGTGCAGTGTTTGGTGTCGGTTAAAGTGTTGGTCT
GTTGTTGTGGCCGTGGTGGTGGAGGCGATGGTGTTGTTTGTGTAGTCGGT
TGGTCCAGTGTTGGCTGACTGTTGCTGTGTTTTGTTGTCGGCTGAAGTGT
TGGTCTGTCGTCGTCGTCGTCGTCGTGATGGTGTTGTTTGTGTTGGTTGG
TGCAGTGCTTGTTATCGGTTGCAGTGTTACTTTTTTTTTCTTGAAGTAGT
TTTGGGTGCAGTGCTGTTGTGTGTTGTTCTTGTATGTGTTCGTTGTCGTG
CCCGCCTTGGTTGGTGGCCGCTGCGACGATTCCTTTCCTCGCCTCAACCG
GTGAAGGAAAAGTTCACTTCGAAGTTAAACACAACGAATCCATCTATCTA
TATCCACAGATAAGGGTTCAGAATAAATGTGCAATGAACACATAGCGTTA
GCGGAGCACTATCTGTATTTTTACGAGTCCACAAGCAGCATTTGTTTTTG
TGGTTTCTCTTTAAAAAATTGCACGACCAACAACAACGCAGGGATTTGAA
TTGTGTTTTTTTTCTCAACATATCACAACGAATCCATCTAAATAGTTATG
TATCAACTGATAAGACCCTAAGTAGGATATACTTTTAAATAGCAATTAAC
CCATATAGCGTTAGCGGAGCACACCTGTGTTTCTACGGTTCCCCACGTAC
CTTTTTTCTTTCTTTTTTTTAGGTGGTTTCTCTTCAAAATTTGTTACGAC
GAGAAACAACACTTACCTCAATCGCACAGGGACTTTTGTTTCGGTCTTCT
TACGTTGTCCAGGATGATTTTGCGATGAATGTCATCCCCCAAGCAATGAT
TTTTTATTTTTTTATTTTTTTCGCGTGGTTTCCTGTGGTCACCCGCAGGT
CGGGCATCGTGGACGAGTACCTCAAGGTGCTGACGGCGACCCCGGCGCCG
CCGCCGTCATCGGACCTCTTGGTCACCGTGCCGAACGTGCTTCACGCGCT
CTGCCTCACCCACGACGGCGCTTCGAGGGTGCAGGAGGCGAATGTCTTCC
CCGCGGTAAGGGTGTTGGTTGCTGCTCTCTTGTTGGCGGTGGCGGTGGCG
GTGGTGTTGTCCGTGTTGTCGCGGCTCTCTTAATTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGGTGGTAGTGATGATTGTTTTCCGGTTGTTCTTGTCGG
GGGGTTATTAACATCGACCGCGGTAACCGACTGACCAATGAGAGGGTGCA
GGAGGCCAACGTGTTTGTACGTCTGGAAGACCCTCTCATGGCCAACCCCC
CACCCCTCTCTCCGCTGTTTCCTCTCTGTTGATCGTCTGTCTGTGTCGTC
GTCCAGTTTTTCCGCATGCTGCACACCCCCGAGTCGATGCACCCGCAGTC
GCGGTACCCCGAAGGAAACATGACGTCCGTGGTGGGGGCGGGCCTCGACG
AGCTGATGCGCCACGTGCCGGCGCTTCGGCCCCAGTGTATCAAGGCCCTC
GTCTCGTCTTTGAAAGAGGTGAGTTGAACAGCAGCACTTGGCGCTCGAGC
ATTACCATATCCCAACCTACTACCCCCCTCCCCAGTCCTCGGTGAAATCG
ATCGGGAATCTACGGGATAGTCGCTTTAGCACCCATGTTTTTTTGTTTTC
TTGTTGGAAGGGGCGACACCGAGAAATAAGTCTCGCGACAACTTTTAGGC
CTCGACTCCCCATGTGCACGAAGGTGCCGAGGTCGGCCTCCTAAGAGCGG
TTCCGGGTAGGGGATGCGCCCCTCACCCGCCCCCTCCGGTGTGATGCGGA
CTCGCCGAACACCTACCTCACGGCGCTCCACTCCCTCCGCGCTTGCTGCT
TGCTGTGCGGTGGCCCTCGGTCGCCGAAATCTCCCCGCACTCCCCCCTTA
CCGTTTGTACGCAAAGCTGCGACGCGTGCGGTCGTACTGTAGCACTACGG
TATGCCCACTCAAGTCACGAACGCGCCTCCCTCCCACAACGCCCCCCCCC
GCCCCCCCCGCCCCTTGATTTTCGTATTTTGTCTCCATGAATTTGTAATT
GTTACGCCGCTCCCTACAGCTTGTCGGGAAGGGGGACGAGCTGCTGAAGA
GAGAGCTCGCCGGCGACTCCTCGGCGGAGGTAAAGTGAAGTGTGTCTCTC
GCGTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTCGCGTTGCCTT
GCCTTGTCTTGCCGTGTCGAACAAAACAGGTGCTCAAACGAGCGGTCGCT
GATGCAACCGTACCCCCCCCCCGTGTTATCGTGTCTCACCAAAAAAAGGT
GCTCAACGAGCGGACGCTGATGCAGCAGTACGCCGCCAACTTCGGGCAGC
TCCTAGAGTCCGCCCTCGGCCGTCCCGAGAACGCCAAGCCCTTCGCGGAC
GCCGGCGGGGACGAGGTCCTCCTGTCCCTCTTCTCGCTCGCGGTGCCTGG
ACCGAGGGCTCTGTTGGCGCGCGCGTCGTGCGCCGGCGGGGGCGGCGGCG
GTACGACGTCGTCGTCCTCTTCGTCGTCGTCGTCCTCTTCGCAGCAGCAC
AGCCTGGCCAACCACGCCGCCTCCCAGGCGCTGACGAGCGCGATGAAGGC
CCTCGGCACGCACGACACGGCGCGGCTGCTGAAGCGTGTCCTGGTGGCGC
TGGACAGGGAGTTGGACAGGCTGGACGCCGCCAGGAAGGCGGTCGTGGAA
GCGGGGGTGAGAGACAGAGTGAGGTTGTTTGGTTCGACCCCCCCGACCCC
ACCCCCTCGGCTTATCGTTTTTTGCCTCCTTTGTGGGAATAGAACCTTTT
TTACTATTATCAATCTTGTTTTCCCCACCCTCCTCTTTGTTGTCGATGGT
CCATTTTCTTGATCCTTTTTGGCCACCGCATGTCCGTGTTGCTACTGCCC
CCCTCCCTCTGGCAGGGTATGTCCGCGACCGTGGCATCCGCTTCGGGGTC
CTCCGGCGGCGGCGGCGGCGGCGATGCCATGGACGTCGACAGCGAAGCAC
CGCCGGCCGCCGTAAAATCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:43651..58120-

>mRNA_Ecto-sp6_S_contig101.777.1 ID=mRNA_Ecto-sp6_S_contig101.777.1|Name=mRNA_Ecto-sp6_S_contig101.777.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:43651..58120- (Ectocarpus species6 EcLAC_371)
ATGCGTATTCGGGCATCCTCCGGGGCGGGGGGGGTGGGCCAACCCGAACC
TCGCCTCTCTAGAGAACTGGAGCCCTTGAAGCGCGCCATCCTCGAAGCCA
AAACCGATGCGGAGTTGATCGCCGCGTTGAAGCTGGTGAAGGGGGAGGAC
GAATGGGAGGAGCAGCCAGACCTCTACGACTGGTGCGATGTGCTGGACCG
AATGGACGAGACGCTCGAGACGAACATGCTCCGCCACCCGTCACTGCTGC
TCATCCAGCCCGCCGACCACCAGCAACAGAAGAAGCCCCCCGCCACTGGT
GCTGGTGGTGGCGGGGATGCTGGCGGTGACGGTAGCGAGGACACAGCGGT
GGCGACAGCGGCGGCGGGCGAGGTGGTGCTCTGCTGCCTGAACTTTCTGG
CGGTGTTGATGAGAAGTTGCGTCAATAAGCACGTCTTCAGCTCGGCCGAG
CACCTGCGCTCGCTGCTAGCTGCTGGGGATGACGCGGTGGCGGAGAGCGC
GTTGCGGTGTCTCATGCTGCTCACGGTGCCGCCGCTGCTTCACCGGCATC
AACAGCCGGAACTCCACAGCATGTGCTCCATCCACAAGGATAAGGCGGTG
TCAGCGGAGCTTATGACCCTATCCGGCGGGTGGGGTGGGCGGGGTCAGGG
GTTGGGCCTGCTGGCTTGCGTTACGGGGAGAGTTGAGGGCGAGGCCAAGG
TGAGCGGCAGGTACGCCCCTTCTCAGGGCACGGACGAGGCTGCTGCTGCT
GGTGCTGAAGATGACGCTGACGGTGCTGATGACGGGTCTTCTCCCTCCGG
CAGCGGGCAGGGGGGGGGGGCAGGGGGGAGGGAAAAAGAGGAGGAGAGCA
ACCGCGCACCGTCGCCCGGGGGGTACACGCGTTTCAGGACGATATTTGTG
CCGGCGAGGGTGGGAGGCCCACCAGCAGGCGAAGCGGGAGACGCAGACAG
CACCTCGGAAGGCATGTTCCGGCGATTAACCAAGGAGCACACCGCCGTCC
CGAAGCGGCGGCTGTTCTCCCTCCTGGCGAGGGTCAGGAGCGCCGTGGCG
TGGCGGGGGGGGGTGGAGGCTCGGCGGGCCGCAGTGCGGAGAAGGATCAT
GGCGCTGACGGCGCTGGTGTACTGTCATCCTTCCCAAGAGGCCCTCATGG
CGTACATGAGCATCCAGCCGGAGCTTATCCAGGAGCTAGTGGATCTGGTC
CGCGTGAGGACCGACCAGGCGGCGCAGATGACGGTCCCGCTCGACATCTC
CGTGCTCGCAGTGCACTGCCTGGCGGCGCTGGTGCACACGAGGAGCGGAG
CGTCAAGCCTGGGGCTGGTTGCCCGACACACGCACGTCTTTCAGGAGCTC
GGCATCACGAGAGGGCAGTACACGGGCTTGCTGCCGCTCCTCGTGCGTCA
CGGAGTAGCCTCGCTCTTCATCATGCCGGAGCAGGATGCCGCCGCCGCCG
CCGCCGCCGGTGCTGCAGCCAGCGCTGGAAGAAGTGATGGCGATAGCGGA
GTTGTAGAGTCCAAGTCGTCGGACCCCGGGGATGGGAAGTCGCCGCCCCC
GCCCCCGCCAGACGCCGCCTTGTCGCTCGGCATCGCCTTTGTGGAGGCCG
CAGGCGCGGCCCAGTCGAAGGGGCGCCGCGATGGGGGTAGCGGCGGGGGG
GGTGCTCCTAACGCCGACGGCGGGGGGGTCAAGGAGGAGAAGGGGACGGC
TGGCGCGAGTTCTCCAGTTCTGTCGGAGATGGACCAATTGCGCTGGGTCG
AGACGGTGTTCAGCCTGGTGTGGGCGGTGGTAAGCGTGCAGCACGGGGCG
GCGGCCATGACCGAGTGCGGGCTGATCCCGGCCCTCCTCAACGTCGTACA
GCTCAACATGGACGGACAGCAGGGCTTCGGCGGCATGGGCAAGCCCTTCC
AGCGGCGGTACGTGGTGTCGCAGGCCGTTCAGATCATGGAGACAGCGGTG
GTGAACAATGCGGCCGCTCTCTCCGCATTCAGGGATCTCGGCGCAGCCGA
GGTGCTCGCGTCCGCCTTTTCCACTGAGGTTGGAAGGCTTCGCGATGCCG
GGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGAGATAAC
CGTGGTGGTGGTGGTGGTGGTAGCGGGATGGTGGTGGACGACGAGGGCAA
AGAAGAGGGCAAAGGCAAGAGCAAGAAGCCGCCCTCCTCCTCCAAGACCA
CTAAGGGTAAAGGCAAGGGTAGAGATAAGGACGGCAAGGCCAAGGGAACC
ACCTCTTCCTCCTCAGCTGTTGTCGCCACGGGAGGCGGTCCCGACAGGGT
CGGGGAGGGGGGCGCAGGGGACGATGCGAGCGCGGCGGCCGGTGGCCCCC
TGGCCGACCCGTCTCCGTCGCAGAAGGCACTCCTCTTCTCCCTGTTGAAC
GCCCTCAGCATCACGTTTCAGAACCAGACCCAAACACACCAGCAGGTGGG
GTCAGACCCCCTGCTGGAGGCGTTTTTGACGGCGGCGGTCATGGACGTTT
TCCGCAATAGCGACATGTTCGGGGGTGTGCTGGTGGCGCTGACGGCGACC
CTCATCTCGGACGTGGCCAACCAAGACCCCAGCACCACTGTGGCCTATTT
GCTCAGGTCGGGCATCGTGGACGAGTACCTCAAGGTGCTGACGGCGACCC
CGGCGCCGCCGCCGTCATCGGACCTCTTGGTCACCGTGCCGAACGTGCTT
CACGCGCTCTGCCTCACCCACGACGGCGCTTCGAGGGTGCAGGAGGCGAA
TGTCTTCCCCGCGTTTTTCCGCATGCTGCACACCCCCGAGTCGATGCACC
CGCAGTCGCGGTACCCCGAAGGAAACATGACGTCCGTGGTGGGGGCGGGC
CTCGACGAGCTGATGCGCCACGTGCCGGCGCTTCGGCCCCAGTGTATCAA
GGCCCTCGTCTCGTCTTTGAAAGAGCTTGTCGGGAAGGGGGACGAGCTGC
TGAAGAGAGAGCTCGCCGGCGACTCCTCGGCGGAGGTGCTCAACGAGCGG
ACGCTGATGCAGCAGTACGCCGCCAACTTCGGGCAGCTCCTAGAGTCCGC
CCTCGGCCGTCCCGAGAACGCCAAGCCCTTCGCGGACGCCGGCGGGGACG
AGGTCCTCCTGTCCCTCTTCTCGCTCGCGGTGCCTGGACCGAGGGCTCTG
TTGGCGCGCGCGTCGTGCGCCGGCGGGGGCGGCGGCGGTACGACGTCGTC
GTCCTCTTCGTCGTCGTCGTCCTCTTCGCAGCAGCACAGCCTGGCCAACC
ACGCCGCCTCCCAGGCGCTGACGAGCGCGATGAAGGCCCTCGGCACGCAC
GACACGGCGCGGCTGCTGAAGCGTGTCCTGGTGGCGCTGGACAGGGAGTT
GGACAGGCTGGACGCCGCCAGGAAGGCGGTCGTGGAAGCGGGGGGTATGT
CCGCGACCGTGGCATCCGCTTCGGGGTCCTCCGGCGGCGGCGGCGGCGGC
GATGCCATGGACGTCGACAGCGAAGCACCGCCGGCCGCCGTAAAATCG
back to top