Homology
BLAST of mRNA_Ecto-sp6_S_contig101.776.1 vs. uniprot
Match:
D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)
HSP 1 Score: 634 bits (1635), Expect = 3.250e-216
Identity = 380/391 (97.19%), Postives = 382/391 (97.70%), Query Frame = 1
Query: 1 MLGVLECIPREPVYVAWPVLPAEEDGTTGSXXXXXXXXXXXXXXXXXXXXXXQSAPPNELPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNVLMEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR 1173
MLG+LECIPREPVYVAWPVLPAEEDGT XXXXXXXXXXXXXXXXX +SAPPNELPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNV MEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR
Sbjct: 1 MLGLLECIPREPVYVAWPVLPAEEDGTXXXXXXXXXXXXXXXXXXXXGS---RSAPPNELPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNVFMEFSRAKAEHQTWLRTLEAANQTAPPSAEGKEQTTDXXXXXXXXXXXXXXXXXXCPPEMPWPEPDFFRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSR 388
BLAST of mRNA_Ecto-sp6_S_contig101.776.1 vs. uniprot
Match:
A0A6H5LD86_9PHAE (DUF913 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD86_9PHAE)
HSP 1 Score: 189 bits (480), Expect = 9.960e-50
Identity = 114/134 (85.07%), Postives = 116/134 (86.57%), Query Frame = 1
Query: 1 MLGVLECIPREPVYVAWPVLPAEEDGTTGSXXXXXXXXXXXXXXXXXXXXXXQSAPPNELPPLLKAMSGLLRCLAATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNVLME 402
MLGVLECIPREPVYVAWPVLPAEED T SXXXXXXXXXX +SA P ELPPLLKAMSGLLRCL ATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNVL+E
Sbjct: 670 MLGVLECIPREPVYVAWPVLPAEEDETADSXXXXXXXXXXKGHSSSSSGP--RSAAPTELPPLLKAMSGLLRCLTATEWLAGALTLLTRWAHSRGAQTAAGQQAASRWGAILVSGSGRRVLERLMRLHRNVLVE 801
BLAST of mRNA_Ecto-sp6_S_contig101.776.1 vs. uniprot
Match:
A0A448ZD07_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)
HSP 1 Score: 93.6 bits (231), Expect = 1.060e-16
Identity = 54/182 (29.67%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 595 FRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGF 1140
+++ +V +GA+V G++ D +V ++E G +V +++R NS+GV+RYRTR GW+SE RG GR+PI E+LSV + + ++E+ E ++ I+ G + +R++G N LAR+ V +L ++ R++ SLPR + + + + + L +++GF
Sbjct: 1195 YKLRIVCAEGAVVRDGIEIDSCASVGSMEMGEIVESFDRCVNSSGVLRYRTRRGWLSEQTRGHGREPIAEVLSVWKSQI--DDNDEKAERN------------VKGRIEDG-----IPDIRSSGANVLARIQPVYVELYSSLLRLVQQSLPRLFSGK----GTSSMVTDLMKMLGSGIKKGF 1353
BLAST of mRNA_Ecto-sp6_S_contig101.776.1 vs. uniprot
Match:
A0A482T089_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T089_9ARCH)
HSP 1 Score: 79.3 bits (194), Expect = 3.500e-12
Identity = 51/164 (31.10%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 595 FRINVVAQDGALVGSGLDSDGSVAVHTVECGTVVVAYERAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMN 1086
F++ V GALV G++ +GS + E GT + A+ER AN+AG++RYRT+ GWISE+ R + IVE+LS+GLT + I + R + LR +L R H+ +Q+ AR++A P R + N++
Sbjct: 25 FQLRVTGFGGALVREGIEIEGSRVIFVAEMGTELEAHERKANNAGLIRYRTKLGWISEYRRDQQKSAIVEVLSIGLTNDA----------------------TSKAVIDESSR---LLSLREACSVALLRTHSSLRQIGVNLARIIASDSPTLRSRSSSSMNLS 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.776.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 3.25e-216 / Id = 97.19 Expect = 9.96e-50 / Id = 85.07 Expect = 1.06e-16 / Id = 29.67 Expect = 3.50e-12 / Id = 31.10 Sequence D7G2U2_ECTSI A0A6H5LD86_9PHAE A0A448ZD07_9STRA A0A482T089_9ARCH back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 639.8 Seed ortholog evalue 8.4e-181 Seed eggNOG ortholog 2880.D7G2U2 Model size 1207 Hectar predicted targeting category other localisation Exons 5 EggNOG free text desc. Ubiquitin associated domain EggNOG OGs 2D4WP@1,2SWJ7@2759 Ec32 ortholog description UBA-like Ec32 ortholog Ec-16_001500.1 Cds size 1185 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348728.6316628-UTR-Ecto-sp6_S_contig101:39233..39255 1682348728.6316628-UTR-Ecto-sp6_S_contig101:39233..39255 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig101 39234..39255 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348728.6419566-CDS-Ecto-sp6_S_contig101:39255..39435 1682348728.6419566-CDS-Ecto-sp6_S_contig101:39255..39435 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 39256..39435 - 1682348728.653484-CDS-Ecto-sp6_S_contig101:39900..40080 1682348728.653484-CDS-Ecto-sp6_S_contig101:39900..40080 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 39901..40080 - 1682348728.6659572-CDS-Ecto-sp6_S_contig101:41018..41133 1682348728.6659572-CDS-Ecto-sp6_S_contig101:41018..41133 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 41019..41133 - 1682348728.675268-CDS-Ecto-sp6_S_contig101:41757..42065 1682348728.675268-CDS-Ecto-sp6_S_contig101:41757..42065 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 41758..42065 - 1682348728.6881223-CDS-Ecto-sp6_S_contig101:43020..43422 1682348728.6881223-CDS-Ecto-sp6_S_contig101:43020..43422 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 43021..43422 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.776.1
>prot_Ecto-sp6_S_contig101.776.1 ID=prot_Ecto-sp6_S_contig101.776.1|Name=mRNA_Ecto-sp6_S_contig101.776.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=395bp
MLGVLECIPREPVYVAWPVLPAEEDGTTGSGGGDGGGGETGPKDHSSSSS back to top mRNA from alignment at Ecto-sp6_S_contig101:39234..43422-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.776.1 ID=mRNA_Ecto-sp6_S_contig101.776.1|Name=mRNA_Ecto-sp6_S_contig101.776.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4189bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:39234..43422- (Ectocarpus species6 EcLAC_371)ATGTTGGGGGTGCTGGAGTGCATCCCGCGGGAGCCGGTGTACGTGGCGTG
GCCGGTGTTACCGGCGGAGGAGGACGGGACGACGGGCAGCGGCGGCGGCG
ACGGCGGCGGCGGTGAGACGGGGCCCAAGGATCATTCTTCCTCGTCTTCG
GGTTCCCAGTCGGCGCCGCCGAACGAGCTCCCGCCCCTGCTGAAGGCCAT
GTCGGGACTCCTCCGCTGCCTGGCGGCCACCGAGTGGCTGGCGGGCGCGC
TGACGCTGCTGACGCGGTGGGCGCACTCCCGCGGGGCGCAGACGGCGGCG
GGGCAGCAGGCGGCGAGCCGGTGGGGGGCGATCCTCGTGTCCGGGAGCGG
CCGCAGGGTCCTCGAGCGGCTGATGAGGCTCCACCGAAACGTTCTCATGG
AG GTGAGCGGGGGAGGGTGGCGCAAGTCGAGGTCGTCGGAATATGCGTCA
AAGTGTTGTCGTAGGCTTCTAATGGCTTTAGTTTTGTCGCAGGCTTGTAT
TGTAGTAGTTTTTGCTCGGCGTGGGGGGGAGGGGGGGAGCGGGGAGGGCG
TCTCGTGTGCGGTTTTGTCTATGGTCGCCGGGTACCCGTGCCAATAGCAC
ATCTTGACCTCGCTCTTGCCGGAGGGGGACTACCGTCGCACCCAAGTATG
TAACATGCAGCAGGTCTCACCTTCGTGTGGGTTGCACGGCACGACCATCC
CCATGCAGCGGTCCTGGTCCCTCTGTAGCGGTAGGCTATGCATAGGGCGG
GTGGCGTGTGAAATCTCTTGGCATCTTTTTGTTTGAGTTGGGCAGGTGCC
CAGTACTTGGCGGGTGAAACGGCGAACATATCTTGGCACGGATAGAATTA
ACCAAGGTGGTCTTTACGTATCCTGGTACATGTCAGGGTTGCCCGCTACA
GCATGGGGTGGGTGGATTGGCTCGTTGCACACACCCGGAACCTGACTGTA
CTTGGTGGAGACGAGAAAGAACGGCGCAGCTACCGCCGTCGTGCCCGTCT
TTTTCATTCGTCGGGGACCCTTCCAGCGCCCCTTCCTGAGTCCCCCCTTT
TGGCACGATCATGCATCCAACCTCCGTCCAAATAAGCGGTACAATGGCCT
CGCCACGCAAACAACTGCTTGCTTGCGTAACCGTCCCTACTTCCTTTCCT
GCCGTTTTTTGGCCGGCCCTGCCCACCTGTCTTCCTTCCTGTTGCGTCCT
TTTTTCATTGTCATTTTTTTCTCTCTCTCACACACTCCCTTCCTCTCTCT
TTCTCTCTCCCTCCGTTTCTCTCTCTCACACACTCCCTTCCTCTCTCTCT
TCCCCCCCCCCCCCCTCTCTCTCTCGTGCTTTCCATCCACCCCCCAACCT
GTGCCAGTTTTCTCGAGCCAAGGCGGAACACCAGACATGGCTGCGCACCC
TCGAAGCGGCAAACCAAACCGCCCCCCCGTCCGCCGAGGGAAAAGAGCAA
ACCACGGACGGCGCAAGCGCCGCCGCACCGGCCGCCGGAGGTGGCGGGGG
TGGGGGTGGGGGTTGTCCGCCCGAGATGCCTTGGCCGGAGCCTGACTTTT
TCCGGATCAACGTCGTGGCGCAGGACGGGGCTCTGGTCGGGTCCGGGCTG
GACAGCGACGGCAGCGTGGCGGTGCACACAGTGGAGTGCGGGACGGTGGT
CGTGGCGTACGAGAG GTACATACGCGCGTTGTGTTATAGGTGTTTTGTGC
CGGTGTGTCTTTCGTGTTTGTTGGAGATCGCCTACGCGAACCGGCTGACC
GATGAAAAGACGCAAGTCTCGGTGCGGTTAAACAACGCAGAAAATGCTGC
TGAAGAAGGCCGTGAGCTGGAACCCCGTGAAGGGCGCTTGTGTGTTAGCC
GTGTGTTTTGTTAGTCGCGTTCGGCTTGCGGTTGCCTGGAGGGATAACGC
ACGTACCGTACGTGGCGTGCGTTGTAAAACACCACCTGGACCGCTTGTCA
AAGCTCGATTACTCCGCGTCGAAGAAGGTTGAGGTGTACACATTGAAGGA
CACGTTTTCGGAAAGCCCTCGACGCGACTGTTCCAACGCCTCCCGCCATT
TTTCTGCACCTCCACTTGTCTCTGCTGTTGAGTCTTCCAGCTTTTGCAGT
CGGTTTAAGGAAGGGGTGTGATATCTTGTGTCACCCACGGTACCGCTTGC
GCGCCCAACACGTTTTCCTCCTCCACCCGTTCTCCTTCCTTTTCTCCCCT
TCCACCACCACGACAATGATGACAACAACGACAACAACCGCCACCGAATA
ACGACAACGATGACGATAACGACGACGACGACATTACAGGGCGGCGAACT
CTGCCGGCGTCATGCGTTACCGCACCCGCCACGGCTGGATCTCGGAGCAC
GCGCGCGGCACCGGCCGGCAGCCGATAGTGGAGATACTCTCCGTCGGTCT
GACG GTGAGAAAAAGTTATTGATGCCATGCACAAGCAGTTGTACGTTTAG
ATACCACCGATAGGGGAGGTGCCGTCCGTTGACCGGGCGGTGAGAAATTG
TTTACAGTTGCTAGATAACACTGCGCAGCAGTTGTGTGTCTAGATACAGT
ATGCATACCACCGATACGGGAGATGCAGCTGTCCGTTGGCCTGGCGGTCA
GAAGTGAAAGTTGCTTGTGCGCAGCAGTTGTAACTCGATACCTTGGGGAA
GCTTTTCGACTTCTATACTGCGGCGTCTGCTCCCGTGTTGTAATAGGCCG
CCACCCAAGATGCCCCACACCACGTTTTAGGCCCGCCCTCTCTCTCGGCC
GTGTCAAGCTACACATCCGTCTACTGTAACCCCCAGGGACCAGTGTTTTC
GGTCGTGTCGCAATGGTTTTACGCCCAGCCCAGCCCCATGTGCTGACAGT
TGCGTAGTATAGAAAGAGATGTTCAGATTTTCACGAAAAAATAGGAAAAG
ACTGTCCCGCAACATCCTTCTCCATTTAAGAGAGCTGAGCATGCACCAGC
GGGTCTGCATTGTGCACCTTTGAGGAGAGAGACCGAGGAAGAGGCGCCCG
CAGTTGATGCAACGGCATGCATGGTGGCTTCTGCTGGAGACTTGGTGTTT
GTGACTGCTGTGCTCTTTTGTGTCTTCGCTTGTGTTAAATGGATATCGGT
GACCCTGTTTGCTACAGCACGGGCCCGCAGTTGCGTAGTACATAATGAGA
ACGAAAAAATAGAAAATAGGTATAGGAAAACATGGCTCTGCGGTGGATCC
TTACACCAAACTATGTATAACCACCTGTGCTCGACGAAATAAGAAGCTGA
GCCTCCTCGCGATTTTGACGTTTCTTTTCTGCGGGCCCGCACTGGCTGTG
TCTTCCGGAACAAAACCCGCGGTATATACCCGTGAAAAACAGGGACAGGG
GGGAGAGCCCTCGGAGGAGGAGACGGAATCCGAAACGGAGCACCGCAGGC
GCGTCCAGCAGCAGCAGCAGCTTGAACAGCACATCCAGCAGGGGGGCCGG
CGGCGCCCCGTGCACGGCCTGAGGGCGACAGGGTGCAACTCGCTGGCAAG
GCTGCACACGGTCACCAAGCAG GTTCGTCGTGGTGCCTGCGCGCGCGGGA
GGGGGGCGGGGGCAGCGGGAAGGGTGGTTGTCGTCGGCAGGCGGTGGTGG
TCGTGGTGATGGTGGAGGAAGAGGTGTTGGCGATGGTTGTTGCTGGATGT
TTGGCTTGGAACGTGTTCTTGGTTGTTGACTGTTGGCGTGACAAGCGGTT
TTCTTGTTAATGGCGTCTTGTTGGTGTCTTCGCTGCAGTTGGTCCCGCAG
TTTCGGAGGCTGTCGTCGGCAACAACCCGTCGGCCATTGATGGATGAACC
CATCACCACCGACGGAAAAACACACCGGTATGAAGGGTCGCAAAAAATAG
TGATTTACCCCCCGACTTCCTATCCGATGAAGCCACCACGACCGACGCAA
AAAGACGGTGGTCTGAACGGTCGTACAAAATACTTTAAAGTAACTTGCCC
ATCCCCCCCTCCCCCGTTCCCGCGAATTCTTTGGCAGCTCGTGACCGCGT
TTGCTCGGGTGCTAGCTGGCTCTCTGCCACGACCCCACCACAGGGAGGAC
TTGACCCCGAACATGAACCCGGTGGCGCCGGCGGTGTGCGAATTCTTGTC
GGAGAGCCTGCGGGAAGGCTTCGCCCTTGGGCTGGACAGGACGGAGGGCT
CTCGCGGTAAGCGCTAA GAAAAGAGGTGCAACGAGAGAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:39234..43422-
>mRNA_Ecto-sp6_S_contig101.776.1 ID=mRNA_Ecto-sp6_S_contig101.776.1|Name=mRNA_Ecto-sp6_S_contig101.776.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:39234..43422- (Ectocarpus species6 EcLAC_371) back to top