mRNA_Ecto-sp6_S_contig101.771.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.771.1
Unique NamemRNA_Ecto-sp6_S_contig101.771.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 2.420e-48
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 2 
Query:    2 ARGSSGAQTGSRGGGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
            ARGSSGAQTGS   GATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct:  744 ARGSSGAQTGSXXXGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 839
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BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.280e-41
Identity = 88/111 (79.28%), Postives = 88/111 (79.28%), Query Frame = 2 
Query:    2 ARGSSGAQTGSRGGGATNVASAAQAIG---------------AARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
            ARGSSGAQT       TNVASAAQAIG               AARQALRNTHEGEWKLEAD KGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct:  679 ARGSSGAQTXXXXXXXTNVASAAQAIGGWPCVENCCVCKYIGAARQALRNTHEGEWKLEADPKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 789
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3W3_ECTSI2.420e-4896.88HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L8R1_9PHAE9.280e-4179.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:8160..9077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.1947608-CDS-Ecto-sp6_S_contig101:8159..82901682348728.1947608-CDS-Ecto-sp6_S_contig101:8159..8290Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 8160..8290 -
1682348728.2047555-CDS-Ecto-sp6_S_contig101:8750..88391682348728.2047555-CDS-Ecto-sp6_S_contig101:8750..8839Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 8751..8839 -
1682348728.2146728-CDS-Ecto-sp6_S_contig101:8997..90771682348728.2146728-CDS-Ecto-sp6_S_contig101:8997..9077Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 8998..9077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.771.1prot_Ecto-sp6_S_contig101.771.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 8160..9077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.771.1

>prot_Ecto-sp6_S_contig101.771.1 ID=prot_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp
GPGLVRRSDREQGRRRHERCIGGASDRRGSPGSEEHARGRVEAGGGPQGL
RHDASSGAPRDGGDVDPPAAPPDADQTPPTPTAYGAQPMRRAPARQVTF*
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mRNA from alignment at Ecto-sp6_S_contig101:8160..9077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=918bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371)
GGCCCGGGGCTCGTCAGGCGCTCAGACCGGGAGCAGGGGAGGCGGCGCCA
CGAACGTTGCATCGGCGGCGCAAGCGATAGGTAGGCGATACAACCATGAG
TTTTAATGCCTAGGGCGGTGGTACGAGTTCTTGCGTACGGTGGTGATAAA
ATTGCCGTGTTCCTCGTAATCGTTAGGTTGCATCGACGGCGCTAACCCGC
TGTGCATTGAAAAAACTGCTGTGCGTGCAAATAAATAGGCGCGGCTCGCC
AGGCTCTGAGGAACACGCACGAGGGAGAGTGGAAGCTGGAGGCGGACCTC
AAGGGCTCCGACACGACGCCTCCTCAGGTTTGTGTGAGGGAGGGGTTGTA
GTGATAGCCGTGCATGCCGTAGGGGGTTGCGGGGGGAGGGGGCAACGGAA
ATGCAAAAAACGATATTTGTGTATAATACAAGTGTGTATAATCGAGCAGA
GAATTAGGGTGCCCTTGATCTTGCCCTACCGATTTTCGTGGGTCCAGGCT
TTGTTTCGCAAGGAGTTAACCGGAATGTGGTCATCATCCTTGCGATTGGT
GTGCCACGCCGAATATGCCATGGGTTGGTTGGACGTCCCGGCTAACCAAA
CGTTTCACGTTCGGTAGGAACGACTACATACCTACCATTTTGTTGTGTAT
TGGTACTCTGTCGGGCGTATGCTTTCGGCTGGTACTGTTATGCCTTCGGC
TACTACTGTTAAGTCTCGGTGCACTGCGCTGCTGTCTCTCTCCATCCTCT
TGTCGGCTGCCGTCTTCTGTCATTTTCCTGTCCGCAGGTGCCCCGCGAGA
CGGTGGTGATGTTGATCCGCCTGCTGCACCTCCTGACGCCGATCAGACCC
CACCGACTCCTACAGCGTACGGTGCTCAACCTATGCGCCGGGCACCCGCT
CGTCAGGTGACTTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:8160..9077-

>mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371)
GGCCCGGGGCTCGTCAGGCGCTCAGACCGGGAGCAGGGGAGGCGGCGCCA
CGAACGTTGCATCGGCGGCGCAAGCGATAGGCGCGGCTCGCCAGGCTCTG
AGGAACACGCACGAGGGAGAGTGGAAGCTGGAGGCGGACCTCAAGGGCTC
CGACACGACGCCTCCTCAGGTGCCCCGCGAGACGGTGGTGATGTTGATCC
GCCTGCTGCACCTCCTGACGCCGATCAGACCCCACCGACTCCTACAGCGT
ACGGTGCTCAACCTATGCGCCGGGCACCCGCTCGTCAGGTGACTTTTTGA
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