mRNA_Ecto-sp6_S_contig101.771.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI) HSP 1 Score: 174 bits (440), Expect = 2.420e-48 Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 2 Query: 2 ARGSSGAQTGSRGGGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
ARGSSGAQTGS GATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct: 744 ARGSSGAQTGSXXXGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 839
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE) HSP 1 Score: 152 bits (383), Expect = 9.280e-41 Identity = 88/111 (79.28%), Postives = 88/111 (79.28%), Query Frame = 2 Query: 2 ARGSSGAQTGSRGGGATNVASAAQAIG---------------AARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
ARGSSGAQT TNVASAAQAIG AARQALRNTHEGEWKLEAD KGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct: 679 ARGSSGAQTXXXXXXXTNVASAAQAIGGWPCVENCCVCKYIGAARQALRNTHEGEWKLEADPKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 789 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.771.1 >prot_Ecto-sp6_S_contig101.771.1 ID=prot_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp GPGLVRRSDREQGRRRHERCIGGASDRRGSPGSEEHARGRVEAGGGPQGLback to top mRNA from alignment at Ecto-sp6_S_contig101:8160..9077- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=918bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:8160..9077- >mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371)back to top |