mRNA_Ecto-sp6_S_contig101.770.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig101.770.1
Unique Name	mRNA_Ecto-sp6_S_contig101.770.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A6H5K1Z7_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z7_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.290e-64
Identity = 144/163 (88.34%), Postives = 145/163 (88.96%), Query Frame = 1

Query:  100 RPAGXXAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMARQAAAQXXXXXXXXXXXXXDAPMTSPAVKGKGKAPAHEGSGGGRPGARRNPSCGGQPQLVV 588
            RPAG  AATAT EKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRM LLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMAR AAAQXXXXXXXXXXXXX APMT P VKGKGKAPAHEGSGGGR G R      G P +VV
Sbjct:  296 RPAGAGAATATSEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMILLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMAR-AAAQXXXXXXXXXXXXX-APMTLPVVKGKGKAPAHEGSGGGRSGGRA-----GIPPVVV 451

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: D7FHV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV8_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 3.370e-39
Identity = 111/192 (57.81%), Postives = 113/192 (58.85%), Query Frame = 1

Query:   13 VEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGXXAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMARQAAAQXXXXXXXXXXXXXDAPMTSPAVKGKGKAPAHEGSGGGRPGARRNPSCGGQPQLVV 588
            +EEESKMEVDSPXXXXXXXXXXXXXXXXXRPAG  AATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQ                                                       QAAAQ             DAPMTSPAVKGKGKAPAHEGSGGGRPG R      G P +VV
Sbjct:   54 IEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQ-------------------------------------------------------QAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRA-----GIPPVVV 185

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S1Z2K3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2K3_TRICV)

HSP 1 Score: 80.5 bits (197), Expect = 6.950e-14
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1

Query:  145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVA 387
            E+V VP P+V   RLRLLCS+LRLE+C D SF +V T+   L +V  NR  +L+EL SVA+ LGA +  DL+SL  +L  A
Sbjct:  242 EYVDVPRPLVSPHRLRLLCSLLRLESCRDTSFVKVNTIARRLCRVEANRTCILRELASVAQGLGADAIRDLRSLSIRLSDA 322

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.960e-12
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1

Query:  145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLD 381
            E++ VP  V+  +RLRLLCSVL+LE+C D++F +V T+V  LS+V  NR  +L EL +VA +LGA +  +L++L+ ++D
Sbjct: 2193 EYIGVPRVVISQDRLRLLCSVLKLESCKDSAFTKVNTIVKRLSRVDANRGFILSELGTVAHALGADAIRELRALKIRMD 2271

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S2QUU6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUU6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.250e-11
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1

Query:  145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSL 366
            ++VK P  VV   RLRLLC+VLR E C D+SF +V +++S LSKV  NR+TL++EL SVA++L + +T DL +L
Sbjct:  660 KYVKTPRTVVAARRLRLLCAVLREEVCKDDSFSKVLSIMSALSKVKANRITLVEELGSVAQNLSSDATTDLATL 733

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 72.4 bits (176), Expect = 8.230e-11
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1

Query:  148 WVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVA 387
            WV+ P   +  ERL+ LCS+LR+E   DN+F +V T+V  L +V  NR  +L EL  VA SL + S HDL++L  ++D A
Sbjct: 3600 WVQAPGIEISPERLKRLCSILRMETFRDNAFSKVNTIVRRLCRVESNRGLVLAELAGVAHSLASDSIHDLRALRIRIDEA 3679

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S2W4E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4E8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.580e-6
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 2

Query:  548 AGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTEMLEK-------------LLRALDLDGLWDALSSCLTVVSVLE 739
            +G P   V L++SSSELKLLRVLQTL +L G +++  +K             LL+++DL+ LW+ L++CL VVSVLE
Sbjct: 1238 SGTPSSAVTLSTSSSELKLLRVLQTLHSLCGSNSDDNKKSEGGAIVSQELVSLLQSIDLESLWEQLNACLRVVSVLE 1314

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BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S4JHL0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JHL0_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.740e-5
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 2

Query:  506 RPHMKVAAVAGRGRAGIPP-----VVVNLNSSSSELKLLRVLQTLVNLSGK---------------DTEMLEKLLRALDLDGLWDALSSCLTVVSVLE 739
            R  +  A  +G G+A  P        V L++SSSE+KLLRVLQTL  L G+                T+ L  LL ++DL  LWD L+SCL +VSVLE
Sbjct:  393 REKLTAAEASGDGKARSPEEGRASTAVTLSTSSSEIKLLRVLQTLHVLCGELHDDTAKKHEGNHIFITQELVDLLHSIDLQSLWDQLTSCLRLVSVLE 490

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5K1Z7_9PHAE	1.290e-64	88.34	HECT domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FHV8_ECTSI	3.370e-39	57.81	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S1Z2K3_TRICV	6.950e-14	51.85	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S1VJ82_9STRA	2.960e-12	46.84	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A7S2QUU6_9STRA	1.250e-11	52.70	Hypothetical protein n=2 Tax=Triparma pacifica Tax...	[more]
B7G082_PHATC	8.230e-11	45.00	HECT-type E3 ubiquitin transferase (Fragment) n=1 ...	[more]
A0A7S2W4E8_9STRA	3.580e-6	46.75	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S4JHL0_9STRA	4.740e-5	41.84	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig101:677..3708-
coding sequence from alignment at Ecto-sp6_S_contig101:677..3708-

protein sequence of mRNA_Ecto-sp6_S_contig101.770.1

>prot_Ecto-sp6_S_contig101.770.1 ID=prot_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=200bp
MEVDSPPPPAAAATAAATAAAAGRPAGAGAATATWEKYEWVKVPAPVVQH
ERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKS
LGAVSTHDLQSLEQQLDVAKRDAMARQAAAQAKQEEGEEEAEEEDAPMTS
PAVKGKGKAPAHEGSGGGRPGARRNPSCGGQPQLVVERAEAPAGVADPG*

mRNA from alignment at Ecto-sp6_S_contig101:677..3708-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig101.770.1 ID=mRNA_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3032bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:677..3708- (Ectocarpus species6 EcLAC_371)
GGGTCCCCCGCAGTGGAGGAGGAGTCGAAGATGGAGGTGGATTCCCCTCC
GCCACCTGCGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGCGGCGGGGC
GCCCGGCGGGAGCGGGAGCGGCGACGGCCACTTGGGAGAAGTACGAGTGG
GTGAAGGTGCCGGCCCCCGTGGTTCAGCACGAGAGGCTGCGGCTGCTGTG
CTCGGTGCTACGGCTGGAGGCCTGCAGCGACAATTCCTTCCAGGTGGGTA
GAGGGAGTGTGGTGTGTTGCATGGTGGGCCTTGAGTAGCCCCTCCCCGGC
TACCCCTCGAACCCACGTCCGTCACGACTGTCACCCTGCTGCGCCTGTGT
TCCGCGGGGGAACTCTCCTCTAACGTCCACACGCCTTTCAAGCACGGACG
CCCCGCGCCTCCGCGCGCCCCTTTTGTGACGTTTCTCTGTCCAGGAAGGG
CTGCATGGTCGTGCGCTCAAATGGTTCCTTGTAGGCAAAAGTAGCCAGAA
GCGCGTGTGGTCAGCGCAACACCAACAGACAAGAGGAGTGGGTAGTAATA
CATCTGAGCCCCCCCCCCCCTTCCCCCCCCCCCGCGCGCTCTATCGAAAT
TCCTTGAGTGAGCGGGAACGGTTGTGAGCAACCTTTCAAAGGTCCCGAGC
ATCGCATGCCAATGGTCCAACTACTAGGGCATGCAAAACATATAAGTACG
CCCCCTCCCCGTCCCCCGTCCCCTCGCCCCCTTACAATACCCTTCAGCGA
GTGGGAACTGTGGTGAGCAACCTTTCGAAGGTGCCCGAGAACCGGATGAC
TCTCTTGAAAGAGCTGGTGTCGGTGGCCAAGTCTCTCGGCGCCGTCAGTA
CGCACGACCTGCAGTCGCTGGAGCAACAGCTCGATGTGGCGAAGCGCGAC
GCCATGGCGAGGGTGAGTTTGAGACGTTGGGATGATGGATGGAAGGGCAG
CTTGTAATTCGGTGATTGATAGTCGAGAGAGTGGGATGGGATGAGGTGGC
AGCGGCCAAGGTGTAGGTCTGTGGATAGATTGGACGAGCTCGGCGGTAAT
GATTTGTACCTCAATAATGGGGGGGGGGTTTCACGTTTTGCATGTCTTTG
TTACGACCACGCGTCTTTCCTCGAGAGGACAGAGCGGGATAGGGGGTATT
CACGTTTTGCATGTCTTTGTTACGACCACGCGTCTTCCTCGAGAGGACAG
AGCGGGATGGGGGGGGGGGGGTTACGCAATGTTGTGTTTGCGCGTGCTCG
GTGGCTTGGTTGGGGGTTGAGCCGGGTTACAAACCGCAAACCGGTTTGGG
ATCAGCGCAAACGCCCGCATGAATCCAATGGTGATTTTCCAGCCCCTCGA
CACGCCGCGCACTCGAGAAGGGCCGCCATCGTCGTCGTCGTCGTCGTCCA
GCCTTTTTTTTTTTGGCAAGAAAAGTTGTTGTTCATGACGGGGAAATAAG
CGAGAGTGCGAGAGGGGAAATGTTTGGGCGAGTTGCTATGTTGGGTAGAC
TGAGGGCAATAACTTGCTCACGCTCGCTCGTCATCTCACCCTTGCGCTCT
TTCTGGATCGTCGTCGTCGTTCCAAACTATTGGAACGAAGCAGCAGGCAG
CCGCGCAGGCTAAGCAGGAGGAGGGGGAGGAGGAGGCGGAGGAGGAAGAC
GCACCTATGACGTCGCCGGCAGTGAAGGGCAAGGTGGGTTTGTATTTTGT
TTGTGTGTGTTGACGTAAAGCTTTCAGACTTGATTTTTTGCCCACTGTTT
TGTTGGTGCCTGGCCGCGAACACCAACGGTTGCTCCGCGATGACGAGTTC
GAGATGCTTTTGTTCGCTGTTCTGGCGCAACTGCCGTAGCGTGAAGAACA
CCTGGCTTTCCGAACTACGTTATTCGTGGTGGTTATTATTGTCGTTGTCG
TTGTCGTTGTTGTTGTTGTTGTTGGTATTACCTCACTTGCTTCGATAATT
GTTTCTTGTTAGTCGTTGTTGTTTGATGTCGTTGTCGTTGTCGGCGTCAG
AGTCTCTGGTATAACAGCGCGATGACCGAGGCGGTGGTGTCCTCTGATGC
CCGTTTACGGGGCAAACACACGCTAGTTTTTCGTTTGCAGGGAAAACCCC
GTCGTGTGTGTCCGCCCGCCTCGCTTCTACCCTACCGCGGTCGAACAACG
CGTCACTCCCCTCCCGTCCCTCCCCTCCCTTCGCCTTCCCGCAACTCAGG
GAAAGGCGCCCGCACATGAAGGTAGCGGCGGTGGCAGGCCGGGGGCGCGC
AGGAATCCCTCCTGTGGTGGTCAACCTCAACTCGTCGTCGAGCGAGCTGA
AGCTCCTGCGGGTGTTGCAGACCCTGGTTAACCTTTCGGGGAAGGATACC
GGTGAGGGGTGGTGTGTGATGCCGTGGGGAGTCAGATGGTGGAGATTTGA
TTGTGGCTTGTGACGTTTTTTTGGCCGTTTGCGGGGATGAGGTTTTGGCC
TGTTTGCTGGGATGTTGGGGGCGGGTAGTACGGCGTGGGGATTGATTGGC
CCTTGCCTGTTAGATGGGCCGTGTGCGGGGTTGAGTTTTTTTCCCTGTTT
GCTGAGATGTCGGGGGCGGGTACGATGGCACGGGATTGACCTTTGCTTGT
TAGCTGGGATGTATCTTGGGGGGGTGGGTACACATGGTTGACACCGATGC
GCCAGCCAGTGGAACCGAAGAGATAAAACAAGACGGACAACATAATTTGT
CTGTCAGCAGCAGGTGACCCGTGTGTGTGTACCCTCACGGCCTCCCAGAT
CATGGTAGCCTCTAGAAGCATCTTTGTTTCAGCCGCTTAGCGCTGTCGGT
TCTAATATCAGCGACGCCCGCACCCTCACTCAACCTCACGCACACGACCT
CCCATTTTGTTTCCATGTACGTCTGCCCCCATCCTTCGTCTCACCCGTTT
GTTGGTTCGCTCGGTGGCGGATGGATCGTCGGTCGAGAGCAGAGATGCTT
GAGAAGCTCCTCCGAGCTCTGGACCTGGACGGGCTGTGGGACGCGCTGTC
GTCGTGCCTCACCGTCGTATCCGTGTTGGAGG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:677..3708-

>mRNA_Ecto-sp6_S_contig101.770.1 ID=mRNA_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:677..3708- (Ectocarpus species6 EcLAC_371)
ATGGAGGTGGATTCCCCTCCGCCACCTGCGGCGGCGGCTACGGCGGCGGC
TACGGCGGCGGCGGCGGGGCGCCCGGCGGGAGCGGGAGCGGCGACGGCCA
CTTGGGAGAAGTACGAGTGGGTGAAGGTGCCGGCCCCCGTGGTTCAGCAC
GAGAGGCTGCGGCTGCTGTGCTCGGTGCTACGGCTGGAGGCCTGCAGCGA
CAATTCCTTCCAGCGAGTGGGAACTGTGGTGAGCAACCTTTCGAAGGTGC
CCGAGAACCGGATGACTCTCTTGAAAGAGCTGGTGTCGGTGGCCAAGTCT
CTCGGCGCCGTCAGTACGCACGACCTGCAGTCGCTGGAGCAACAGCTCGA
TGTGGCGAAGCGCGACGCCATGGCGAGGCAGGCAGCCGCGCAGGCTAAGC
AGGAGGAGGGGGAGGAGGAGGCGGAGGAGGAAGACGCACCTATGACGTCG
CCGGCAGTGAAGGGCAAGGGAAAGGCGCCCGCACATGAAGGTAGCGGCGG
TGGCAGGCCGGGGGCGCGCAGGAATCCCTCCTGTGGTGGTCAACCTCAAC
TCGTCGTCGAGCGAGCTGAAGCTCCTGCGGGTGTTGCAGACCCTGGTTAA