mRNA_Ecto-sp6_S_contig100.769.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.350e-57
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 243
            VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW
Sbjct:   75 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.140e-38
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
            + AAMI FIKAYK+E+SPL+PPACRF PTCSVY V++IE+FG  +G VLTAWRL+RC P  GYG D PQWPPP WFAG
Sbjct:   64 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.480e-34
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1

Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
             A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:   65 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.720e-33
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1

Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
             A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:  163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.420e-32
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
            +  A++  ++ YK+E+SP + PACRFLPTCS Y + +I+ +GP KG VLTAWR++RCNPF G G D PQWPPPGWFAG
Sbjct:   71 LSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 9.770e-32
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1

Query:   16 ISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGER 240
            +  +K YK+ LSPL+PP CRF+PTCS Y +Q+ E+F P + AVLT WRL+RCNP AGYGVD PQWPPPG++AG +
Sbjct:   42 VGALKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQ 116

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.920e-31
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
            V   M++ I  YK  +SPL+PPACRFLPTCS YGVQAIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP
Sbjct:   63 VSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 113 bits (283), Expect = 2.600e-31
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGE 237
            + ++MI+ I  YK+ +SPL+PPACRFLPTCS YGVQAIE+FGP+KG +LTAWRL RC+PF G G D P+WPP  +  G 
Sbjct:    1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGS 79

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 118 bits (295), Expect = 3.990e-31
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 1

Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
            + A+M+S I  YK+ +SPL+PPACRF+PTCS YGVQAI++FGPTKGA+LTAWRLMRC+PF G G D P+WPP
Sbjct:  170 MSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241

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BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A1E7FRQ3_9STRA (DUF37-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRQ3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-29
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1

Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
             AAMI+ I  YK  +SPL+PPACRF+PTCS YGVQAI+++G TKG VLT+WRL+RC+PF G G D P+WPP
Sbjct:   51 SAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

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Match Name	E-value	Identity	Description
D8LF53_ECTSI	1.350e-57	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZNH9_9STRA	2.140e-38	71.79	Hemolytic domain-containing protein n=1 Tax=Tribon...	[more]
A0A4D9DFE3_9STRA	5.480e-34	63.64	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
W7TML8_9STRA	7.720e-33	63.64	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A7S1U9Q3_9STRA	3.420e-32	60.26	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A7S0QB70_9EUKA	9.770e-32	62.67	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]
A0A7S2R8H5_9STRA	1.920e-31	68.06	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
B8BR73_THAPS	2.600e-31	62.03	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A7S2ENE8_TRICV	3.990e-31	69.44	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A1E7FRQ3_9STRA	1.250e-29	66.20	DUF37-domain-containing protein n=1 Tax=Fragilario...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:650041..650286+
coding sequence from alignment at Ecto-sp6_S_contig100:650041..650286+

protein sequence of mRNA_Ecto-sp6_S_contig100.769.1

>prot_Ecto-sp6_S_contig100.769.1 ID=prot_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRL
MRCNPFAGYGVDYPQWPPPGWFAGERW*

mRNA from alignment at Ecto-sp6_S_contig100:650041..650286+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)
GTTGGAGCGGCCATGATCTCCTTCATCAAGGCGTACAAGAAGGAGCTGTC
GCCTTTGATCCCTCCGGCGTGCCGCTTCTTGCCGACGTGTTCGGTGTACG
GCGTGCAGGCAATCGAGAAGTTCGGCCCGACGAAGGGGGCGGTGCTGACG
GCGTGGCGGTTGATGCGGTGCAACCCTTTCGCCGGGTACGGGGTCGATTA
CCCGCAGTGGCCTCCCCCGGGCTGGTTTGCGGGAGAAAGGTGGTGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:650041..650286+

>mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)
ATGATCTCCTTCATCAAGGCGTACAAGAAGGAGCTGTCGCCTTTGATCCC
TCCGGCGTGCCGCTTCTTGCCGACGTGTTCGGTGTACGGCGTGCAGGCAA
TCGAGAAGTTCGGCCCGACGAAGGGGGCGGTGCTGACGGCGTGGCGGTTG
ATGCGGTGCAACCCTTTCGCCGGGTACGGGGTCGATTACCCGCAGTGGCC
TCCCCCGGGCTGGTTTGCGGGAGAAAGGTGGTGA