mRNA_Ecto-sp6_S_contig100.769.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.350e-57 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 243 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW Sbjct: 75 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA) HSP 1 Score: 133 bits (335), Expect = 2.140e-38 Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234 + AAMI FIKAYK+E+SPL+PPACRF PTCSVY V++IE+FG +G VLTAWRL+RC P GYG D PQWPPP WFAG Sbjct: 64 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA) HSP 1 Score: 122 bits (306), Expect = 5.480e-34 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234 A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP G G D PQWPPPGW AG Sbjct: 65 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA) HSP 1 Score: 122 bits (306), Expect = 7.720e-33 Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1 Query: 4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234 A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP G G D PQWPPPGW AG Sbjct: 163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.420e-32 Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234 + A++ ++ YK+E+SP + PACRFLPTCS Y + +I+ +GP KG VLTAWR++RCNPF G G D PQWPPPGWFAG Sbjct: 71 LSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA) HSP 1 Score: 118 bits (295), Expect = 9.770e-32 Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1 Query: 16 ISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGER 240 + +K YK+ LSPL+PP CRF+PTCS Y +Q+ E+F P + AVLT WRL+RCNP AGYGVD PQWPPPG++AG + Sbjct: 42 VGALKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQ 116
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.920e-31 Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216 V M++ I YK +SPL+PPACRFLPTCS YGVQAIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP Sbjct: 63 VSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS) HSP 1 Score: 113 bits (283), Expect = 2.600e-31 Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGE 237 + ++MI+ I YK+ +SPL+PPACRFLPTCS YGVQAIE+FGP+KG +LTAWRL RC+PF G G D P+WPP + G Sbjct: 1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGS 79
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV) HSP 1 Score: 118 bits (295), Expect = 3.990e-31 Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 1 Query: 1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216 + A+M+S I YK+ +SPL+PPACRF+PTCS YGVQAI++FGPTKGA+LTAWRLMRC+PF G G D P+WPP Sbjct: 170 MSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A1E7FRQ3_9STRA (DUF37-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRQ3_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.250e-29 Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1 Query: 4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216 AAMI+ I YK +SPL+PPACRF+PTCS YGVQAI+++G TKG VLT+WRL+RC+PF G G D P+WPP Sbjct: 51 SAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.769.1 >prot_Ecto-sp6_S_contig100.769.1 ID=prot_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp MISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLback to top mRNA from alignment at Ecto-sp6_S_contig100:650041..650286+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:650041..650286+ >mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)back to top |