mRNA_Ecto-sp6_S_contig100.767.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI) HSP 1 Score: 378 bits (971), Expect = 1.400e-127 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 3 Query: 324 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 890
VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF
Sbjct: 7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 195
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA) HSP 1 Score: 215 bits (548), Expect = 1.450e-63 Identity = 118/224 (52.68%), Postives = 146/224 (65.18%), Query Frame = 3 Query: 213 LEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 884
++ M PA + A+RPVVEHEYFDHR VPQLE YL EQ SGTYDFEANKALLKLYQFFPDL + + VAL KALM +P+ DF AL Y+ P EP+ SL RA D+LE A++ FW + + ALI+ +PGF R + LA TFQ +E+ + L GAEL +FV V DG + FA NEFNQ+QPK+FKESVEF+K+LK + LS
Sbjct: 2 VQPMQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQASSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLG-DG-RAAFARNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.600e-46 Identity = 96/223 (43.05%), Postives = 140/223 (62.78%), Query Frame = 3 Query: 222 MDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEAN-ADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
M PASYE + +++ + F+ ++ +L+ YL+EQ+ + TYDF ANKALLKLY F+PD + +AL L KALM +PSTD M L+Y+VP + EPV +L R A LETAKFV+FW+ G L+++V GF + +R +++ L+ TFQ + L LD +L +V AN +D +S +G F N NQ +PKKFKE++ FD++L ID L+S
Sbjct: 1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQIATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSDKLSI--EGKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFLAS 220
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA) HSP 1 Score: 153 bits (387), Expect = 6.430e-40 Identity = 87/223 (39.01%), Postives = 131/223 (58.74%), Query Frame = 3 Query: 219 QMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFAL-NEFNQIQPKKFKESVEFDKILKTIDKLS 884
+M+ P S +++ + + + L+EYL EQV++ TYDF ANK L+KLYQF+P+ +AL + K++M +PSTD L+Y+VP L EP+H+L R AD LETA+FV+FW+ G L++++PGF + +R F++ L+ TFQ + L LD L F+ D + + KF L N NQ +PKKFKE++ FD +L I+ LS
Sbjct: 5 EMEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTDTYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCL--EEKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA) HSP 1 Score: 148 bits (374), Expect = 4.650e-38 Identity = 85/215 (39.53%), Postives = 122/215 (56.74%), Query Frame = 3 Query: 243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
E++ + +D A+ LE Y+ EQV+ TYDF ANKALLKLYQFFP VAL+L KALM +PSTD L+Y+VP + EP+ +L R + LET KFV+FW+ G L++++ GF + MR +++ L TFQ + + L LA +V +DV+ +G + F N NQ QPK FKE++ FD + + L+S
Sbjct: 12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRL--EGKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLTS 223
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA) HSP 1 Score: 142 bits (357), Expect = 3.240e-35 Identity = 83/220 (37.73%), Postives = 130/220 (59.09%), Query Frame = 3 Query: 231 PASYEALRP-VVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
P+SY ++ V+ + V LEEYL+ QVK G+YDFEANK+LLKLY +P L E V +L KAL+N+P+TDF L+YI+P L E V ++K AA++LETA++ DFW A+ ++P +K +R I+ A T++ + ++ + L G EL SF+ AN + A + + FA N+ NQ +K+KE V+ +L +++L++
Sbjct: 44 PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S4ULZ9_GUITH (Eukaryotic translation initiation factor 3 subunit K n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULZ9_GUITH) HSP 1 Score: 131 bits (330), Expect = 6.190e-32 Identity = 73/210 (34.76%), Postives = 117/210 (55.71%), Query Frame = 3 Query: 243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTI 872
E ++ ++ FD PQLE Y++EQ+K G D +AN ALL+ YQ+ P E V +L KALM +P+TDFM MY+VP + + + LK+ +D LET +F ++W AD ++ +PGF + +R +IV ++ T+Q R +E ++L GA+L +E V GS + +NEFN+ K ++ + FD++ I
Sbjct: 3 EEVQRLLSERRFDPSITPQLEAYVDEQIKGGYTDLDANLALLRFYQYNPATANSEVVCKILVKALMQMPATDFMLCMYLVPGAVKE-QKIEVLKQLSDKLETCQFKEYWADMADEKNASVANGIPGFHEAIRQYIVGVISATYQVIARDELEILINLKGAQLDQLLEEKKWVAK----GSDVQIPVNEFNEASVKFKQDGISFDQLAPII 207
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA) HSP 1 Score: 121 bits (303), Expect = 1.090e-28 Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 3 Query: 243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQ 674
E++ + +D A+ LE Y+ EQV+ TYDF ANKALLKLYQFFP VAL+L KALM +PSTD L+Y+VP + EP+ +L R + LET KFV+FW+ G L++++ GF + MR +++ L TFQ
Sbjct: 12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQ 154
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A067CBU0_SAPPC (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBU0_SAPPC) HSP 1 Score: 114 bits (285), Expect = 1.680e-25 Identity = 81/217 (37.33%), Postives = 121/217 (55.76%), Query Frame = 3 Query: 246 ALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPE----KVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 884
A+R V + D + V LE YL+EQ+ S D EAN LLKLY +P +PE +VA VLAK LM +PS F+ Y+V L + + + L +A D L++ F DFW D+P + +PGF++ +R FI+ T+A + + + ++ L+L ++AS V A++ + D S + N NQ++PKKFKE +EF IL TI LS
Sbjct: 18 AVRAQVAADGMDEKLVGLLEAYLDEQIASNVVDEEANLMLLKLYTIYP--VKPEQHQTRVAQVLAKGLMALPSKYFLGATYMVTEALRKDKNITDLLKAGDVLQSCLFTDFWTL----DLP-FAKKIPGFEQAVRAFILSTIAKSHEVVAKAFVQAQLNLSEKDVASLV---AELGWTTKDAS-YVVTPNSENQMRPKKFKEDIEFADILDTIQVLS 223
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A1X6NQY4_PORUM (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM) HSP 1 Score: 113 bits (282), Expect = 4.710e-25 Identity = 63/170 (37.06%), Postives = 103/170 (60.59%), Query Frame = 3 Query: 258 VVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSA 767
+++ + +D +P LEEY+E+QV +GT D AN A LKLYQF+P + V+ +L KA+M +PSTDF+ MY++P EP+ +L + A LET +F DFW A G + L++ VPGF + +R F++ + T++ R + + L L+G + A+ A +V+ +
Sbjct: 17 LLQSQRYDPDILPTLEEYVEQQVATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWP--ATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVIKS 184 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.767.1 >prot_Ecto-sp6_S_contig100.767.1 ID=prot_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=229bp MPLEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANback to top mRNA from alignment at Ecto-sp6_S_contig100:638323..644440- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.767.1 ID=mRNA_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6118bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:638323..644440- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:638323..644440- >mRNA_Ecto-sp6_S_contig100.767.1 ID=mRNA_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:638323..644440- (Ectocarpus species6 EcLAC_371)back to top |