mRNA_Ecto-sp6_S_contig100.766.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 153 bits (387), Expect = 1.350e-37 Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 3 Query: 258 VPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 482
VPPFRPREVTWNLPPSMLSEASKDAF NLEC+SFSDAVERSGD FDGV LPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct: 78 VPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFGRWCYQHVDKVLWAAS 152
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D8LF50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF50_ECTSI) HSP 1 Score: 122 bits (307), Expect = 2.430e-28 Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3 Query: 306 MLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 482
MLSEASKDAFT LECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct: 1 MLSEASKDAFTKLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 59
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 1.060e-14 Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 Query: 10 SRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
S+ + F+VALN+TC G+E WY ST++LQL SLEFC ACR VPTLH+ V+ TPR LW+
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWS 98
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.080e-13 Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 1 AGSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWADNCSDQGNARGSSGGSS 234
AG SR + F VALN+ C G WY+ST QLQL+SL FCVACRSVPT+HL V+ TP L++ + D R GSS
Sbjct: 25 AGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGD-DDAAAVRDKGHGSS 101
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 3.310e-13 Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 4 GSSRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
G S + FIVALN+TC G+E WY ST++LQL SLEFC ACR VPTLH+ V+ TPR LW+
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWS 74
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 5.920e-12 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 4 GSSRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPR 171
G + + FIVALN+TC G+E WY ST++LQL SL+FC ACR PTLH+ V+ TPR
Sbjct: 5 GRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPR 62
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 2.050e-11 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 1 Query: 10 SRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
S + T VALNETC GK WY ST +LQLASLE C+ACR TLHLTV+ TPR L A
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA 191
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 3.130e-11 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 Query: 31 IVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
IVALNETC GK WY ST +LQLASL+FC+ACR+ T+HL V+E PR L A
Sbjct: 56 IVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLA 106
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 3.270e-11 Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1 Query: 4 GSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEG-TPRHLWADNCSDQ 201
G R + F VALN +C G WY ST +LQLASL+FCV CR VP+LHL V P LW D+ + +
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATE 69
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JEK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK4_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 3.560e-11 Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1 Query: 1 AGSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
AG +R + FIVALN++ GGK+W S LQLASL FCVACR+VP+ +TV+ GTP LW+
Sbjct: 6 AGPNRCLDAFIVALNQSWGGKKWCTSVATLQLASLPFCVACRNVPSPCVTVDTGTPPRLWS 66 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.766.1 >prot_Ecto-sp6_S_contig100.766.1 ID=prot_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=391bp MLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHback to top mRNA from alignment at Ecto-sp6_S_contig100:634606..636215+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.766.1 ID=mRNA_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1610bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:634606..636215+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:634606..636215+ >mRNA_Ecto-sp6_S_contig100.766.1 ID=mRNA_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:634606..636215+ (Ectocarpus species6 EcLAC_371)back to top |