Homology
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match:
D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)
HSP 1 Score: 203 bits (517), Expect = 7.470e-60
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1
Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSARVPKAT 342
DIQRLTDELTVLNQQSSRNMHMREYADRFAERAV ATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKE IT LHKRPATS+ SARVPKAT
Sbjct: 121 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVTATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEAITELHKRPATSSASARVPKAT 234
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match:
D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)
HSP 1 Score: 125 bits (313), Expect = 4.780e-31
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1
Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSA 324
DIQRLT+ELT+L+QQ SRN+ +R YADRFA + TAGGS NAAA GVS++GP P+VEDVGKALDWW RAVQTDAE HRLELE +RL E I L K + S +A
Sbjct: 115 DIQRLTNELTILSQQCSRNVQLRWYADRFA---MTTTAGGSANAAATPGVSNDGPGPKVEDVGKALDWWTTRAVQTDAEQHRLELERQRLTEAIAELQKPSSASNVAA 219
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match:
D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)
HSP 1 Score: 85.5 bits (210), Expect = 4.580e-17
Identity = 52/97 (53.61%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRL 291
DIQ+LTDELTVLNQQSSRN H+RE VEDVGKALDWW A+A QTDAE HRLELEGRRLK I L
Sbjct: 117 DIQKLTDELTVLNQQSSRNSHVRE----------------------------------VEDVGKALDWWTAKAEQTDAEQHRLELEGRRLKNAIAEL 179
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match:
D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)
HSP 1 Score: 81.3 bits (199), Expect = 1.390e-15
Identity = 50/94 (53.19%), Postives = 53/94 (56.38%), Query Frame = 1
Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVI 282
DIQRLTDELTVLNQQSSRN MRE VEDVG ALDWW A+A QTDAE HRLELEGRRL++ I
Sbjct: 116 DIQRLTDELTVLNQQSSRNSRMRE----------------------------------VEDVGNALDWWTAKAEQTDAEQHRLELEGRRLQKAI 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 7.47e-60 / Id = 95.61 Expect = 4.78e-31 / Id = 64.81 Expect = 4.58e-17 / Id = 53.61 Expect = 1.39e-15 / Id = 53.19 Sequence D8LRN5_ECTSI D8LRN7_ECTSI D8LRN8_ECTSI D8LRN6_ECTSI
Match Name E-value Identity Description
D8LRN5_ECTSI 7.470e-60 95.61 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LRN7_ECTSI 4.780e-31 64.81 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LRN8_ECTSI 4.580e-17 53.61 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D8LRN6_ECTSI 1.390e-15 53.19 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 207.2 Seed ortholog evalue 4e-51 Seed eggNOG ortholog 2880.D8LRN5 Model size 347 Hectar predicted targeting category other localisation GOs GO:0003674,GO:0005488,GO:0005515 Exons 3 EggNOG free text desc. Domain of unknown function (DUF4139) EggNOG OGs 28Q1A@1,2QWQ0@2759 Cds size 345 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348727.5473707-CDS-Ecto-sp6_S_contig100:597146..597218 1682348727.5473707-CDS-Ecto-sp6_S_contig100:597146..597218 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 597147..597218 + 1682348727.5579572-CDS-Ecto-sp6_S_contig100:597537..597731 1682348727.5579572-CDS-Ecto-sp6_S_contig100:597537..597731 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 597538..597731 + 1682348727.5751605-CDS-Ecto-sp6_S_contig100:597966..598045 1682348727.5751605-CDS-Ecto-sp6_S_contig100:597966..598045 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 597967..598045 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.763.1
>prot_Ecto-sp6_S_contig100.763.1 ID=prot_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGV back to top mRNA from alignment at Ecto-sp6_S_contig100:597147..598047+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=901bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371)GATATCCAGAGGCTGACAGACGAGCTCACCGTCCTGAACCAGCAGTCGTC
TCGAAACATGCATATGCGAGAG GTATGTTAATGTGAACCGACGTGCTGTT
GATCGATGATAGTACGTCTGCTGCGTGGAGCGCCTTGACCCAGGGTGTGG
TTGCTTGATTGGTCGAATCAGGAACGGGGAGCAGCACGGCAAGAACGCTG
CAGCACCATTATAATAGCTGTCCTCGGCACAGCCATTGCTCTCCATTCTA
GCGTCGGAGCACCCAAGTGCGTTCTTTGTTGCTTCTTCTGCCACGACATT
TTTGTATTTTGTTTTTTTGCTTCCTCAGGTTGTCCTCCTGAAAGCAACGA
TCATAACCTTACTATGCTTGCGGTATTCTGATGTGTTTCAGTACGCCGAT
CGCTTCGCCGAGAGGGCCGTGATCGCTACCGCTGGAGGGAGCACCAACGC
TGCTGCCGCTCTGGGCGTCTCCGACAACGGACCAGCCCCGAGGGTGGAGG
ACGTGGGCAAGGCTCTGGATTGGTGGGCGGCCAGAGCGGTACAAACAGAC
GCAGAAGTACATCGACTCGAGCTAGAGGGCCGACG GTACGGCACAGGGCT
TTGGCTTGCTTGCCGGGTGTTTCCTTTCAAACAATATACCATGCGATGTG
CTAGTGTCTTCTCAGGAGCGACGGTTGTATTCTTGGCCTCGCTTCACCTG
GTGTTGCTAGTAAACCAACAAATGAATTACGTGCGCATCGGTACGTTTGG
CCTCTGTTGACTTCAACAAAACATCACGTCATCCACATGAACATGACCCC
ACGTACCCGGCGACGAACAGCCTGAAGGAAGTCATCACCAGGCTCCACAA
ACGTCCGGCCACCTCAACTACTTCCGCGCGTGTTCCGAAAGCAACGAAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:597147..598047+
>mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371) back to top