mRNA_Ecto-sp6_S_contig100.763.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI) HSP 1 Score: 203 bits (517), Expect = 7.470e-60 Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1 Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSARVPKAT 342
DIQRLTDELTVLNQQSSRNMHMREYADRFAERAV ATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKE IT LHKRPATS+ SARVPKAT
Sbjct: 121 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVTATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEAITELHKRPATSSASARVPKAT 234
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI) HSP 1 Score: 125 bits (313), Expect = 4.780e-31 Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1 Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSA 324
DIQRLT+ELT+L+QQ SRN+ +R YADRFA + TAGGS NAAA GVS++GP P+VEDVGKALDWW RAVQTDAE HRLELE +RL E I L K + S +A
Sbjct: 115 DIQRLTNELTILSQQCSRNVQLRWYADRFA---MTTTAGGSANAAATPGVSNDGPGPKVEDVGKALDWWTTRAVQTDAEQHRLELERQRLTEAIAELQKPSSASNVAA 219
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 4.580e-17 Identity = 52/97 (53.61%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRL 291
DIQ+LTDELTVLNQQSSRN H+RE VEDVGKALDWW A+A QTDAE HRLELEGRRLK I L
Sbjct: 117 DIQKLTDELTVLNQQSSRNSHVRE----------------------------------VEDVGKALDWWTAKAEQTDAEQHRLELEGRRLKNAIAEL 179
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 1.390e-15 Identity = 50/94 (53.19%), Postives = 53/94 (56.38%), Query Frame = 1 Query: 1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVI 282
DIQRLTDELTVLNQQSSRN MRE VEDVG ALDWW A+A QTDAE HRLELEGRRL++ I
Sbjct: 116 DIQRLTDELTVLNQQSSRNSRMRE----------------------------------VEDVGNALDWWTAKAEQTDAEQHRLELEGRRLQKAI 175 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.763.1 >prot_Ecto-sp6_S_contig100.763.1 ID=prot_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVback to top mRNA from alignment at Ecto-sp6_S_contig100:597147..598047+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=901bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:597147..598047+ >mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371)back to top |