Homology
BLAST of mRNA_Ecto-sp6_S_contig100.759.1 vs. uniprot
Match: D7FRL3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRL3_ECTSI) HSP 1 Score: 327 bits (838), Expect = 5.810e-110 Identity = 190/193 (98.45%), Postives = 191/193 (98.96%), Query Frame = 3 Query: 246 MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLKDIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLGDKICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXX-QPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK 821
MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLK+IKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLG KICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXX QPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK
Sbjct: 1 MFPDEYGNFNVPNGASLSKKVLLERVKRLKSELALLKEIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDKALSDAALGVRTRDRQIINLGGKICRGRMAMQQLQKDKHQVVDRAKREAREEMNAERQXXXXXXXXXXQPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGANPVRVFKAPGGGRAGK 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.759.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FRL3_ECTSI | 5.810e-110 | 98.45 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1017 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-12_002610.1 |
| Cds size | 648 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348727.1909199-UTR-Ecto-sp6_S_contig100:558614..558715 | 1682348727.1909199-UTR-Ecto-sp6_S_contig100:558614..558715 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 558615..558715 + |
| 1682348727.2009413-UTR-Ecto-sp6_S_contig100:559556..559631 | 1682348727.2009413-UTR-Ecto-sp6_S_contig100:559556..559631 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 559557..559631 + |
| 1682348727.2436764-UTR-Ecto-sp6_S_contig100:562287..562480 | 1682348727.2436764-UTR-Ecto-sp6_S_contig100:562287..562480 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 562288..562480 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348727.2105927-CDS-Ecto-sp6_S_contig100:559631..559724 | 1682348727.2105927-CDS-Ecto-sp6_S_contig100:559631..559724 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 559632..559724 + |
| 1682348727.2187366-CDS-Ecto-sp6_S_contig100:560180..560300 | 1682348727.2187366-CDS-Ecto-sp6_S_contig100:560180..560300 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 560181..560300 + |
| 1682348727.2273977-CDS-Ecto-sp6_S_contig100:560730..560883 | 1682348727.2273977-CDS-Ecto-sp6_S_contig100:560730..560883 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 560731..560883 + |
| 1682348727.2359936-CDS-Ecto-sp6_S_contig100:562005..562287 | 1682348727.2359936-CDS-Ecto-sp6_S_contig100:562005..562287 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 562006..562287 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.759.1 >prot_Ecto-sp6_S_contig100.759.1 ID=prot_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=216bp
MRDAHYRGVPALGGPMSSTDPQRMFPDEYGNFNVPNGASLSKKVLLERVK
RLKSELALLKDIKEDGDARLKAQELDFARRNKEIQAQKEENERQLQMNDK
ALSDAALGVRTRDRQIINLGDKICRGRMAMQQLQKDKHQVVDRAKREARE
EMNAERQQQQQKKKKQQPSQGMQIKSIGHGSGGAGPHFTRASTGGGMGAN
PVRVFKAPGGGRAGK* back to topmRNA from alignment at Ecto-sp6_S_contig100:558615..562480+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig100.759.1 ID=mRNA_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3866bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:558615..562480+ (Ectocarpus species6 EcLAC_371)
GCTCTCCTCCCACAGCTCGCACGTTGATTCCGATTCCACACCCTGACGCT
TTTGCCGCCGGAACCTCTGCTGCATACAGCATCAAGGCCGCCAACCAGCT
TGTGAGTGCTGTTCGAGGTGGCATGGTCAGTTTGAACGAATTGCTGGTTG
AAGCTCCCACGGGTAGACTCCTGCTGCATTGTACTCCTGTGCTTCTTGAC
AGCGGATCCTCTGACGTGAAAAAAGAGTCACTCATGTCTCACTTTTTAGG
TGAACTGCACTTGAGATAGATGCACTCCTGCTGCAAGCAGCGGATGCAAA
CAAGCTGCATTGTGAAACATCTCATCCGTGCTTTGCCCAAGCTTCGTTAG
GGACGACCGCAGTACACTAGGTCGGTCTTGGTCTACCCTTGACAAAGAGC
CTAAAAATGAAGAGCCAAGCCGGTGCGTGTGTGGAGTGTTCAAAGTGGAG
ATTCGGGATGCATCTACATTCGTTTGCCTGCACCAATCACCGTACAAGCT
TTGGGTTCTCTCCTTCGCAGGTACGGTCCAGGGACACACAGAAGAGATCC
TCTACGGAACATGCCTTCAATTCTACGGCGAGAAGGGTGCAGCAACGGTG
TTGCCCCCCCGTGTGTTCAAGAACCAAAAAACTGATCCGAGAACACGCCG
CCTTTCAGCCGGAGTGCACAACAGCACGACAGCACTTGCCTTAATCCGGA
GTAGCATAGCATACAATAAATGTCCTGGCTCTAGCATAGCGGAGAGCAGC
ACCCACAACTCGCTCGTTTGTTCTCGTGATGGCCACAGCTCCAGCAGTAG
GTTCTCATCAACCTCCCTTCCCTTTACACCCTTCCCGATTGGTTTATAAC
CACATCATTGCGAGGTAATGCTAGCTTCTTCGTCGCTAAAACGGGTTTCC
CATTTTCTTACTTTCTTTCCCGTTTTTCTCGTTGTGGAGCAGGAGCGTAG
TTGTCGATTCGCCGACCCGACCACACACCGGCACGCGCACGCTCATCTTC
GAGGGTGTTGCGGAGGCATGCGCGACGCACACTACCGCGGTGTGCCAGCG
CTGGGAGGACCCATGTCGAGTACTGATCCCCAACGCATGTTCCCAGACGA
GTATGGCAACGTGAGTCGGGCTGCCGAGAATATGACACTGCGACGGCATC
TGGCGTGTCTGTTGACTATGCAAGTGTGTAGCGTTCGCGAAATGTGGACA
CAGCCGTAGTCGTCGGGAGCAATGGGCATGAACACACGCGGAGAGGGAGC
GCGACTTATTTTGTCGGTGGGTGTTTTACGGCTGCCGTGCGCGACCGGTG
TGTAGGCTACTGCCGTACTGCTGTTGCGCACGCCGAGGAAAACGTTGGTT
CTCGACCACCGCAACCTGAACAGCGTTGGTGGACGGCGCGGTGGGTCTAC
CAGTGCTTCTTCGTATTGTCGAGCTTAAGTGTTTTAGTACAGCCGTGCAC
GATTCTGCCCGATCTTGGGAAGAGTTCGACGCAATGCCCCAACACCGCCC
CTTTCTCTGCGATACCCCGCTGTCTGTCGGCCCCTGTCGCCCTCTTCGTT
TCTTCTTTGGCCTCAGTTCAACGTCCCTAACGGCGCATCACTTAGCAAGA
AAGTTCTGCTGGAGCGAGTCAAGCGCTTGAAATCCGAGCTAGCCCTCCTC
AAAGATATCAAGGAGGACGGGGACGCCAGACTCAAAGTACGTTCCGTTTT
AGCGATAGCGGCACGTTCCGTTTTAGCGATGGCGGCACGTTCCGTTTTAG
CGATGGCGGTACGTTCCGTTTTAGCGATGGCGGTACGTTCCGAAAGAGCC
GTTGGTAGGTGGGGCACCGCAGAATGGATTGTGATTTGTTTCTATATTGT
CCGCCACGCTGTTTACTTTGGTAGCCGAGAGGAGAAGCTTGCTCGTTGCG
ACGGCAGCGCTGGTTGTTTGGCTGCCGCAGGCCTAGGCGTGGAGCGGAAA
CGACCGGGGTGGGTTGGCAGCGCAAAACGAACACAATACCGTCGCTGTTA
CTATCGGGCCTCACCGCCTGCCACTCGCTCTCTCTCTTACCtTTTTTTTA
TTTCCGCGCGTTTTTTCTTTTTCGCCTTGGTGTGATGTCTCCGGCGGCGA
ACGAAAAAAAACACAGGCACAAGAGCTTGATTTCGCCAGGAGAAATAAGG
AGATCCAGGCGCAGAAGGAGGAAAACGAGAGGCAGCTGCAGATGAACGAC
AAGGCGCTGAGCGATGCGGCTCTGGGAGTGCGCACGAGGGACCGGCAAAT
CATCAATCTGGGAGACAAGGTGCGGCGGTGTGGTATCATGTACGCTGCCG
CGGATGTTTTATTGCGTCGTACGCGCTGGCCGGCAGGTACCCATGGTCGC
TGCGCGAAAGAACCCGTGTCTTCCGGGCTCGTTTTTCTTTCTCTCTCTCT
CTTGGCTCCTTGGAAACGCGTCCTAGGACACAGACAACACCGCGCGTGTG
ACCATGTACCCCTTGCCAGCAAGGGATAGTCCGCCGTGTGTAGTTGCGCC
TGACTGTGATATCTACGTCTCTTTGTTGCATCGTAGTCGGTTCCTGGGTC
TCGGCAGTTTCATTAGGTTTTTCTATTTTTTTCGTATGTACGGGGCTCTT
ACGCGCGCGTGGCGTGTTTTTTTTTGTGTTTGTTTATCGGTAGGCAGAAG
GCGGCCGGCCTTTCTCTGACAAAACCGGTTGTATGTGGTGCTCGTTCAAG
TTACCCCCCCcaCCGACAATACAACAACCTGCGTAGATTGTTCGACGTAT
GCGTTTCAGTCTTGAAACCATGGCTTGCGCTCGAACTCAAAGAGCGATCG
TGCGTCCACCGCTGCATGCCCTCAATCATTCCTTTGGTCGTATGGACTAC
GTACACGATACAGCAGCGCCACCCTCCTCCGTCCCGTCCCCAACACTACA
ATAATCGAGCGTGGTACCGGGAAATCGCTATTCATAGACAATTAATAGGC
AGGTTTTTGATAGACAGGAAAGCAGCGCGAGCAGCCACAAACGCCGCTAC
CCTCCCAGCGCAAGCACCCGACAGAGGCAAAAAAGCAACGATCTGGCCAA
GCGGTGTCGTCTGGCAACACATCGCGGTACCGCCCCGCCCGAAGACGCCT
GGCCGTTTTCGTTTTTTTGTGTGTGTCCGGCTGGAGAGGGCTGTCTCGTC
GTTTGTCTTCTTTGGTTATGCTCTCCACATGTTAAATTGGCATCTCTTTC
TTCTGTTCTTGGTGTGTACGGTCCCGtaCCCTAGCACCTAGCACGCTCAT
TACCGTCGGTCCTTGCACTCCCAAAGGCGAGTCTTCGGTTGCGTTTCGTC
CGTGCCAACAGGCTTTGGCTCGTGGGATTAATTAGACTCAATTTTTGCAT
CCAACCCCCCTCCGCGCGTATGTTCCTCCCCGAACGAAAAGATTTGCAGA
GGGAGAATGGCGATGCAGCAGCTCCAGAAGGACAAGCACCAGGTCGTGGA
CCGAGCGAAGAGGGAGGCGCGAGAAGAGATGAACGCAGAGCGGCAGCAGC
AGCAGCAGAAGAAGAAGAAGCAGCAGCCGTCCCAGGGCATGCAGATAAAG
TCCATCGGCCACGGCAGCGGGGGAGCGGGGCCTCATTTCACGAGAGCGTC
GACGGGAGGCGGCATGGGGGCCAACCCCGTCAGGGTCTTCAAGGCCCCCG
GGGGGGGAAGGGCAGGAAAATAGCGGGGCACGCGAGCCAAGCGCGCGTTC
TCTTTCGGCCGGCCTGTTTCTTGGTATCTCTTGATGCCACCACCGCCGAT
TATACTTGAGGATGGCTGGCGCGCGTGGGCTCTGGCTTTTTTGGACGACT
GCTTCTCGGTTACTAGACATGGGCAGGAACAAGGCGCAAACGAGAGACAA
CGCAAGCCTACACTTT back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig100:558615..562480+ >mRNA_Ecto-sp6_S_contig100.759.1 ID=mRNA_Ecto-sp6_S_contig100.759.1|Name=mRNA_Ecto-sp6_S_contig100.759.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:558615..562480+ (Ectocarpus species6 EcLAC_371)
ATGCGCGACGCACACTACCGCGGTGTGCCAGCGCTGGGAGGACCCATGTC
GAGTACTGATCCCCAACGCATGTTCCCAGACGAGTATGGCAACTTCAACG
TCCCTAACGGCGCATCACTTAGCAAGAAAGTTCTGCTGGAGCGAGTCAAG
CGCTTGAAATCCGAGCTAGCCCTCCTCAAAGATATCAAGGAGGACGGGGA
CGCCAGACTCAAAGCACAAGAGCTTGATTTCGCCAGGAGAAATAAGGAGA
TCCAGGCGCAGAAGGAGGAAAACGAGAGGCAGCTGCAGATGAACGACAAG
GCGCTGAGCGATGCGGCTCTGGGAGTGCGCACGAGGGACCGGCAAATCAT
CAATCTGGGAGACAAGATTTGCAGAGGGAGAATGGCGATGCAGCAGCTCC
AGAAGGACAAGCACCAGGTCGTGGACCGAGCGAAGAGGGAGGCGCGAGAA
GAGATGAACGCAGAGCGGCAGCAGCAGCAGCAGAAGAAGAAGAAGCAGCA
GCCGTCCCAGGGCATGCAGATAAAGTCCATCGGCCACGGCAGCGGGGGAG
CGGGGCCTCATTTCACGAGAGCGTCGACGGGAGGCGGCATGGGGGCCAAC
CCCGTCAGGGTCTTCAAGGCCCCCGGGGGGGGAAGGGCAGGAAAATAG back to top
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