Homology
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)
HSP 1 Score: 483 bits (1243), Expect = 1.220e-169
Identity = 247/258 (95.74%), Postives = 253/258 (98.06%), Query Frame = 2
Query: 14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVH 787
MDHLLEAYASSSS+DEKI EKDP PSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRA+ERAGN RWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWR+GHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQI+PFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVL+LIAKVDPLMRRFKQSEYYE I+H
Sbjct: 1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)
HSP 1 Score: 403 bits (1035), Expect = 1.840e-137
Identity = 283/357 (79.27%), Postives = 293/357 (82.07%), Query Frame = 2
Query: 14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVSTYVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPSEVCLPVDVVMCK 1084
MDHLLEAYASSSSDDEKI E DPKP+VLG LPSELLT+FKDS EYDLATERRRA+ERAGN WVRRFPHERGNWPTHVFIPVPNS+AFKSMAEASVSHFRQRLA AWR HGRAEGGKGG+KRT DGR+RSNQASASSAGKLDPPEVVMN+MDPSGRQHLSLSKTTALRAHQIDPFV+GLK+AVKSSR RVRGGR+MVL LIAKVDPLMRRFKQS YYEEPIVHVSVASVLGDVSTYVSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVPSEVCL VDVVMCK
Sbjct: 1 MDHLLEAYASSSSDDEKIEENDPKPAVLGALPSELLTLFKDS-----------EYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSRVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSD------DVPSEVCLTVDVVMCK 315
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)
HSP 1 Score: 111 bits (278), Expect = 4.900e-24
Identity = 80/240 (33.33%), Postives = 108/240 (45.00%), Query Frame = 2
Query: 236 RRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATA----------------------------------WRQGHGRAEGGKGGKKRTRD-------GRQRS----------NQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVAS 802
R PHERG WP+HV I VP SA + ++ A++ H RL A + G A GG G + GR S A+A P +G HLSLS+ ALRAHQ++PF L+ A +R+F Y+VLVN+D+TRSFVCL+V GG +L LI +V+ + F+Q YYE+P +H+SVAS
Sbjct: 24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)
HSP 1 Score: 109 bits (273), Expect = 3.110e-23
Identity = 77/218 (35.32%), Postives = 116/218 (53.21%), Query Frame = 2
Query: 215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASS-------AGKLDPPEV--VMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFV------SGYDVLVNEDKTRSFVCLRVR-GGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVS 820
A W+R PH GNW THV+I VPN+ MA+A V R+RL G EG + K+ + A +S AG+ + E + +D + SG QHLSLS+T LR++ ++PFV L +A+ +R+FT G +LVN+D++RSFV + V GG + ++ VD ++ +++Q YY + H+SVA+V GDVS
Sbjct: 132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSG-QHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVS 348
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)
HSP 1 Score: 102 bits (254), Expect = 1.310e-21
Identity = 68/195 (34.87%), Postives = 90/195 (46.15%), Query Frame = 2
Query: 230 WVRRFPHERGNWPTHVFIPV-PNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLG 811
W+R F H GNWP+HV + + A + + VS +Q L T +V D G HLSLS+ LR QI PFV L+ A+K R F S ++G VLVN+++TRSF+ LRV G + VL + VD M+ F YYE+PI HVS+AS LG
Sbjct: 57 WIRAFAHVEGNWPSHVHVIIGAGDAELRELCGRVVSRAQQELGTRL--------------------------------------ALVPMDSSELGGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLS-LAGATVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIASCLG 212
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)
HSP 1 Score: 102 bits (253), Expect = 1.410e-21
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2
Query: 137 SASRHDSLRAATEYDL----ATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
S S D + +T +L AT+ ++R +W R FPH GNWP+HV I +P + + MA+ ++ ++ + G+ T + +SS G G HLSLS+ L QI+ FV L A+K + F+ + + G VLVN+DKTRSF+ LRV G Q ++ VD + FKQ YY++PI HVS+AS +G+
Sbjct: 20 SVSSEDEVEESTSVELSAEVATQIGTKRKRPDEPQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAIDRAQELV----------------GENVTLVPFEELRLGESSSTGS-------------GGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVT-LEGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A2Y9DBP5_TRIMA (U6 snRNA phosphodiesterase n=4 Tax=Afrotheria TaxID=311790 RepID=A0A2Y9DBP5_TRIMA)
HSP 1 Score: 99.8 bits (247), Expect = 1.600e-20
Identity = 84/273 (30.77%), Postives = 120/273 (43.96%), Query Frame = 2
Query: 26 LEAYASSSSDDE-KIGEKDP-KPSVLGG------LPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
L Y+SS S+DE + G + P +P GG LPS+ L + + S E D A R VR FPHERGNW THV++P F + + + H + + P V M + HLSLS++ LR H I PFV+ LK+ + S + F TA+ V Y N++KTR+FV L V G LNL+++VD +M F + +Y++P HVS+A +GD
Sbjct: 6 LVGYSSSGSEDEAEAGARAPARPGAGGGRRDQTPLPSQRLPVPDSVLNMFPSTEEGPEDDGAKHGGR----------VRTFPHERGNWATHVYVPYEAGEEFLDLLDMLLPHAQTCI----------------------------------------PRLVRMEEF------HLSLSQSVVLRHHWILPFVQALKDRMASFQRFFFTANRVKIY---TNQEKTRTFVGLEVTSGHAQFLNLVSEVDRVMEEFDLTTFYKDPSFHVSLAWCVGD 219
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)
HSP 1 Score: 99.4 bits (246), Expect = 1.860e-20
Identity = 68/201 (33.83%), Postives = 97/201 (48.26%), Query Frame = 2
Query: 215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQ-HLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
A + RW R FPH GNWP+HV I VP + ++ QR+ TA ++ G EV + M + H+SLS+ L QI+PFV L+ A+K R F + V VLVN+++TRSF+ L++ G+Q + + VD M+ F+ YYE+PI HVS+AS LGD
Sbjct: 42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHC--------QRVITATQRFVG--------------------------------DEVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALT-VEEPTVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
L5MIK6_MYODS (U6 snRNA phosphodiesterase n=4 Tax=Laurasiatheria TaxID=314145 RepID=L5MIK6_MYODS)
HSP 1 Score: 98.2 bits (243), Expect = 1.930e-20
Identity = 65/196 (33.16%), Postives = 92/196 (46.94%), Query Frame = 2
Query: 233 VRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
VR FPHERGNW THV++P F + +A + H + R+ P +V + HLSLS++ LR H I PFV+ LKE V S + F TA V Y NE+KTR+FV L V G L+L+++VD +M F + +Y++P H+S+A +GD
Sbjct: 20 VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 166
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match:
A0A7J7SDP4_MYOMY (U6 snRNA phosphodiesterase n=3 Tax=Myotis TaxID=9434 RepID=A0A7J7SDP4_MYOMY)
HSP 1 Score: 99.0 bits (245), Expect = 3.170e-20
Identity = 75/246 (30.49%), Postives = 105/246 (42.68%), Query Frame = 2
Query: 83 KPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
+P V LPS+ L + E D A R VR FPHERGNW THV++P F + +A + H + R+ P +V + HLSLS++ LR H I PFV+ LKE V S + F TA V Y NE+KTR+FV L V G L+L+++VD +M F + +Y++P H+S+A +GD
Sbjct: 35 RPRVQSPLPSQRLPVPDSVLHMFAGTEEGPEDDSAKHGGR----------VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.22e-169 / Id = 95.74 Expect = 1.84e-137 / Id = 79.27 Expect = 4.90e-24 / Id = 33.33 Expect = 3.11e-23 / Id = 35.32 Expect = 1.31e-21 / Id = 34.87 Expect = 1.41e-21 / Id = 32.17 Expect = 1.60e-20 / Id = 30.77 Expect = 1.86e-20 / Id = 33.83 Expect = 1.93e-20 / Id = 33.16 Expect = 3.17e-20 / Id = 30.49 Sequence D7FRL4_ECTSI A0A6H5K6W9_9PHAE A0A836CMF3_9STRA A0A4D9D6D2_9STRA A0A5D6XW39_9STRA G4YH94_PHYSP A0A2Y9DBP5_TRIMA A0A8K1FRB5_PYTOL L5MIK6_MYODS A0A7J7SDP4_MYOMY Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 1 Seed ortholog score 487.3 Seed ortholog evalue 6.3e-135 Seed eggNOG ortholog 2880.D7FRL4 Preferred name USB1 Model size 1086 Hectar predicted targeting category other localisation GOs GO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838 Exons 6 EggNOG free text desc. U6 snRNA 3'-end processing EggNOG OGs KOG3102@1,KOG3102@2759 Ec32 ortholog description U6 snRNA phosphodiesterase Usb1 Ec32 ortholog Ec-12_002600.1 Cds size 1071 COG Functional cat. J Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348727.0948045-UTR-Ecto-sp6_S_contig100:553985..553998 1682348727.0948045-UTR-Ecto-sp6_S_contig100:553985..553998 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 553986..553998 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348727.1067848-CDS-Ecto-sp6_S_contig100:553998..554125 1682348727.1067848-CDS-Ecto-sp6_S_contig100:553998..554125 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 553999..554125 + 1682348727.1160092-CDS-Ecto-sp6_S_contig100:555343..555490 1682348727.1160092-CDS-Ecto-sp6_S_contig100:555343..555490 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 555344..555490 + 1682348727.125341-CDS-Ecto-sp6_S_contig100:555707..555862 1682348727.125341-CDS-Ecto-sp6_S_contig100:555707..555862 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 555708..555862 + 1682348727.1345873-CDS-Ecto-sp6_S_contig100:556229..556396 1682348727.1345873-CDS-Ecto-sp6_S_contig100:556229..556396 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 556230..556396 + 1682348727.1436384-CDS-Ecto-sp6_S_contig100:556896..557059 1682348727.1436384-CDS-Ecto-sp6_S_contig100:556896..557059 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 556897..557059 + 1682348727.152315-CDS-Ecto-sp6_S_contig100:557431..557743 1682348727.152315-CDS-Ecto-sp6_S_contig100:557431..557743 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 557432..557743 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.758.1
>prot_Ecto-sp6_S_contig100.758.1 ID=prot_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=357bp
MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLR back to top mRNA from alignment at Ecto-sp6_S_contig100:553986..557743+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3758bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371)ACCAGCAACGGCA ATGGATCACCTCCTGGAGGCATACGCTAGTAGTAGCT
CTGACGACGAAAAAATCGGAGAAAAGGACCCCAAACCTTCGGTCTTGGGC
GGACTGCCATCGGAGCTGCTCACCATTTTCAAGGACAGCG GTGAGACCCT
CAGAATCACACCATCATCCATTCTCGTAACTTACGCCTGTGTCAAGTGCT
GGAGCAACTATTGTACATGTACCGCCTTATTGTTTTCGCTGTGGACTTTC
CTTGCTACCCACCTTGATGTAGCAGAATTTCCTTTATCCTTGACGTATTT
GTTACTTCAGGATGTACAAGTATATGCCATAATGTATGCATACAACGAGC
GAATGCTCTAGGTCTACAGATAGTGCCCGGAGATAAGAAACGTCGAAATC
GGCTCGAGCCTCGATTTCTTATTCTGGGCAGAAGGACCACAGCCAAGTTG
GTCAATTTCGTAAAACGGATTTCTTCTTACTTTGGGTTGTCCCATCGTGC
TGATTCTCCTATTTTCTTATTTCTGACGGCGAGGAAAACAACAACACACC
AAAAGCCTTCCTGCAGCATTAAACCGACAGCTGGATGTGGCGAACATTGA
GGTTGGTGGAAGTACAGTACACCAGCAGTGGGTAGCGCAGCCCGCGGCGG
CGCGGGGGCGCGGGGGGCGCCGCGAAAATAACGACTCTCCACCCCACCAA
TAAATTACATCATGGCATGAGCTAGGTAAGGGGTGGGAGCACGGCAGCAG
CAGCAGCAGCAGTGGGATGTTTCTTTGGACGCGCTCTCCCAGCTTCTACC
CCTTCTTTAGATGTCTTGGGGTATCGCACGATCATGCTTCTTATTGGGAC
GGTTCTTCTGTTGTGGCCGAGACTGAGCTGTGTTTCTTAGGCCTGCTTTC
TTCTATTCCATAAAAATTTGAGATTTTTTCTCAACTGCGGGCCCATCTTA
TGCACCATTAATGCCTACCCCCCTCTGCATGCATACTTAGCACACATAAG
ATCTACCGCAGCAGGAAGCCCTCCGGCATACAGAAACTACCACGACCGTT
GCTGCGTGCTTATTCTCCCAAGTCTCCAGGCTCTCTCCCCCAGCAATTCT
GTCTTGGCCAAAGAAGCCCCCATCTTCTGTATTGGCCACATGCACTTTGA
GGACCAGGCCCACGCCGCCGCGTGTGTTTCTATTCAAGACTATCTCTTTC
ATCCTGGACAACAGCAATTATACACTCGACTACATGTACCTTTCGCATTC
TGGACGACAGCAACTCAACACTAGAACATACTTTCGGTACGCTATCGGAC
GGTCGGGTATAAACGCACAATACTGCCAAATTGGCATTTATTTGTAGTTG
TAGCACAGCCTCACGACATGATTCGTTACGTGCTGCCACAGAGTACGACC
TCGCGACCGAGCGGCGGAGGGCAAAGGAGCGGGCAGGGAACACCCGATGG
GTTCGAAGGTTTCCCCACGAGAGAGGGAACTGGCCGACGCACGTCTTCAT
TCCAG GTGTGTGTGTGTGTGTGTGTGTGTGTGGCGTTCGTTTTGGCTCCG
GGTGCGAAACTGTTACTGTAGTCATCGTCAAAAAGCACAGGGTTTTACCT
TACCGCGAACAGCCTCCAGGTTTCGCTCCGAACGTTGCTCAAACCCGGCG
GCATTGCTGCATGCTGCGTGCACCGCCCGCGTGACCAAGCACCCCTCCCC
TCCTCGGCCCGCCACAATACAGTTCCCAACTCCGCAGCTTTCAAGAGCAT
GGCGGAGGCGAGCGTCTCGCACTTCCGGCAAAGGCTGGCTACGGCATGGA
GACAGGGGCACGGGCGTGCTGAAGGTGGGAAGGGCGGGAAGAAGCGCACA
AGGGATGGCCGGCAGCGTTCCAACCAA GTAAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCATCAGATTAGGTTTTGTGTGTCGCGTCGTCGGCAAGA
CGCTTTTCCTGCACCTCCGTCCTTCCAAAGAAGCTGCTGATTGTTTCTGG
AGGCCGACGAAAGTGTCCATACTGAATGTCACGACGTTTCCGGCGGCTTG
GCGCGTAACGCAAATATTTTGCTTTCAGCTGCTGTTTTTTCCAGAGAGTG
CAGGAGGTAGTTTAGTAAGGATGGGTTGTCCTACAGAGAGGAGCGCACGC
AACACCTTACGATAAGTGGAACCCATGTTTGACGCCGTTTCAATCGACAA
CGTTTTTCTGAAAATGCACCTCTTTTCGTCATCTATGCATATAGGCGAGC
GCTTCATCGGCTGGGAAACTTGATCCTCCGGAGGTAGTAATGAATGACAT
GGATCCCTCCGGACGACAGCACCTCAGTCTCTCCAAAACGACCGCTCTTC
GAGCCCACCAGATAGACCCGTTCGTACGGGGGCTCAAGGAAGCCGTCAAA
TCGTCTCGCAG GTGAGGCACCCAGAGTCATTTGGCACCGACTCTTTTTTT
TGTGAAGGGTCAGTTTGATGTCACGCTGTTTACGGGGTGTGTTCCCACAA
GTGAGCTTGAGGTTTCCTTTCACCTCTGTTTCTTCGCACGTGCGCTGTCG
AGAGAGGTCAGAGGACACATCCAGTGCCCCATGCCAGGGGGTTGATTGAC
ACTTGAACAGTGTTTTTCTCGTCGGGAACTCGAGTTCCGAAATCTACCAC
AAACAAGGGACTGTATGACCCGTCCTTATCACTCTATTCAATTCTCGGTC
AGGCGACGCGTTCGTCTCTATGCCAGGAGTTTGTGACGCGTACACATCCA
TTTATTCAATTTTCGAAGAGTGCTTTGCTCGTCGGGAAGTCGAATTCCGA
AGCAATCCTCGGCCCTTCTCCCGTGAAACTTGTCGCCAAACGGATCCATC
CGTCTTGTTTTCTGTTTTTTTTGTTTGTTTGTCCGTGCCGTTAATGCGCG
TTTCGGCTCAGTTTCACCGCTTCCTTCGTCTCCGGATACGACGTGCTGGT
CAACGAAGACAAAACGCGCTCCTTCGTGTGTCTCAGGGTCAGGGGGGGGC
GACAGATGGTTCTCAACCTCATCGCGAAGGTGGACCCCTTGATGAGAAGG
TTCAAGCAGTCGGAGTACTACGAG GTGATTATCGTGCACGAGGGGGACCG
GACCACCTCTCTTGCTCTCTCTATGCACCCGCCAACTTTCGCCGCCCCTT
TTGTCCACCCACTGACCTCCCACGCAGCATCGTCTGAAGTATAAGAGAGG
CAGACAGAGCAGACAAACTGCGTCGTGCTTTGCGTATAGCGTGCGTTGCC
TTGCCTTCCGTGCAAAACGGGCGCCTACCGAGACAACGTTCGGCAGTCTT
GACGGAATGCTTCAGAAGAAGACGACATCGATTAGTCCATAGATTAGAAC
CCGCTTCTAAGAGTCGTGGCCGGCGTGTTCCTCCAGTGGAGTCCTCACTC
CTGTCCGGCACCCCCTTTCGTTCACCCATGCGTGCCTCACGGACAGGAGC
CCATCGTACACGTGAGCGTCGCTTCGGTGCTAGGGGACGTCAGCACGTAC
GTCAGTTCCTCCTCCTCCTCCTCCTCCTCCTCTCGCATCCCTTCTTCCTC
TTCCTCTTCCTCCTCGCCAGGAAAAGCGCCACCACGTGCTTCGCCACCGG
GAGTAGTTGCCAGGGAAGCCCGCCACAGAGCAGGAGGTGGCGAAGGCACC
CAAGAGGATGGCAGCAGCAGTAGTGACGACGAGGAAGACAGCAGCAGTAG
TAGCAGCGACGATGTTCCGTCGGAGGTTTGTCTTCCGGTCGACGTTGTTA
TGTGCAAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:553986..557743+
>mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371) back to top