mRNA_Ecto-sp6_S_contig100.758.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI) HSP 1 Score: 483 bits (1243), Expect = 1.220e-169 Identity = 247/258 (95.74%), Postives = 253/258 (98.06%), Query Frame = 2 Query: 14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVH 787 MDHLLEAYASSSS+DEKI EKDP PSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRA+ERAGN RWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWR+GHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQI+PFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVL+LIAKVDPLMRRFKQSEYYE I+H Sbjct: 1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE) HSP 1 Score: 403 bits (1035), Expect = 1.840e-137 Identity = 283/357 (79.27%), Postives = 293/357 (82.07%), Query Frame = 2 Query: 14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVSTYVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPSEVCLPVDVVMCK 1084 MDHLLEAYASSSSDDEKI E DPKP+VLG LPSELLT+FKDS EYDLATERRRA+ERAGN WVRRFPHERGNWPTHVFIPVPNS+AFKSMAEASVSHFRQRLA AWR HGRAEGGKGG+KRT DGR+RSNQASASSAGKLDPPEVVMN+MDPSGRQHLSLSKTTALRAHQIDPFV+GLK+AVKSSR RVRGGR+MVL LIAKVDPLMRRFKQS YYEEPIVHVSVASVLGDVSTYVSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVPSEVCL VDVVMCK Sbjct: 1 MDHLLEAYASSSSDDEKIEENDPKPAVLGALPSELLTLFKDS-----------EYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSRVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSD------DVPSEVCLTVDVVMCK 315
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA) HSP 1 Score: 111 bits (278), Expect = 4.900e-24 Identity = 80/240 (33.33%), Postives = 108/240 (45.00%), Query Frame = 2 Query: 236 RRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATA----------------------------------WRQGHGRAEGGKGGKKRTRD-------GRQRS----------NQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVAS 802 R PHERG WP+HV I VP SA + ++ A++ H RL A + G A GG G + GR S A+A P +G HLSLS+ ALRAHQ++PF L+ A +R+F Y+VLVN+D+TRSFVCL+V GG +L LI +V+ + F+Q YYE+P +H+SVAS Sbjct: 24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.110e-23 Identity = 77/218 (35.32%), Postives = 116/218 (53.21%), Query Frame = 2 Query: 215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASS-------AGKLDPPEV--VMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFV------SGYDVLVNEDKTRSFVCLRVR-GGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVS 820 A W+R PH GNW THV+I VPN+ MA+A V R+RL G EG + K+ + A +S AG+ + E + +D + SG QHLSLS+T LR++ ++PFV L +A+ +R+FT G +LVN+D++RSFV + V GG + ++ VD ++ +++Q YY + H+SVA+V GDVS Sbjct: 132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSG-QHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVS 348
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.310e-21 Identity = 68/195 (34.87%), Postives = 90/195 (46.15%), Query Frame = 2 Query: 230 WVRRFPHERGNWPTHVFIPV-PNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLG 811 W+R F H GNWP+HV + + A + + VS +Q L T +V D G HLSLS+ LR QI PFV L+ A+K R F S ++G VLVN+++TRSF+ LRV G + VL + VD M+ F YYE+PI HVS+AS LG Sbjct: 57 WIRAFAHVEGNWPSHVHVIIGAGDAELRELCGRVVSRAQQELGTRL--------------------------------------ALVPMDSSELGGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLS-LAGATVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIASCLG 212
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP) HSP 1 Score: 102 bits (253), Expect = 1.410e-21 Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2 Query: 137 SASRHDSLRAATEYDL----ATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814 S S D + +T +L AT+ ++R +W R FPH GNWP+HV I +P + + MA+ ++ ++ + G+ T + +SS G G HLSLS+ L QI+ FV L A+K + F+ + + G VLVN+DKTRSF+ LRV G Q ++ VD + FKQ YY++PI HVS+AS +G+ Sbjct: 20 SVSSEDEVEESTSVELSAEVATQIGTKRKRPDEPQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAIDRAQELV----------------GENVTLVPFEELRLGESSSTGS-------------GGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVT-LEGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A2Y9DBP5_TRIMA (U6 snRNA phosphodiesterase n=4 Tax=Afrotheria TaxID=311790 RepID=A0A2Y9DBP5_TRIMA) HSP 1 Score: 99.8 bits (247), Expect = 1.600e-20 Identity = 84/273 (30.77%), Postives = 120/273 (43.96%), Query Frame = 2 Query: 26 LEAYASSSSDDE-KIGEKDP-KPSVLGG------LPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814 L Y+SS S+DE + G + P +P GG LPS+ L + + S E D A R VR FPHERGNW THV++P F + + + H + + P V M + HLSLS++ LR H I PFV+ LK+ + S + F TA+ V Y N++KTR+FV L V G LNL+++VD +M F + +Y++P HVS+A +GD Sbjct: 6 LVGYSSSGSEDEAEAGARAPARPGAGGGRRDQTPLPSQRLPVPDSVLNMFPSTEEGPEDDGAKHGGR----------VRTFPHERGNWATHVYVPYEAGEEFLDLLDMLLPHAQTCI----------------------------------------PRLVRMEEF------HLSLSQSVVLRHHWILPFVQALKDRMASFQRFFFTANRVKIY---TNQEKTRTFVGLEVTSGHAQFLNLVSEVDRVMEEFDLTTFYKDPSFHVSLAWCVGD 219
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL) HSP 1 Score: 99.4 bits (246), Expect = 1.860e-20 Identity = 68/201 (33.83%), Postives = 97/201 (48.26%), Query Frame = 2 Query: 215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQ-HLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814 A + RW R FPH GNWP+HV I VP + ++ QR+ TA ++ G EV + M + H+SLS+ L QI+PFV L+ A+K R F + V VLVN+++TRSF+ L++ G+Q + + VD M+ F+ YYE+PI HVS+AS LGD Sbjct: 42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHC--------QRVITATQRFVG--------------------------------DEVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALT-VEEPTVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: L5MIK6_MYODS (U6 snRNA phosphodiesterase n=4 Tax=Laurasiatheria TaxID=314145 RepID=L5MIK6_MYODS) HSP 1 Score: 98.2 bits (243), Expect = 1.930e-20 Identity = 65/196 (33.16%), Postives = 92/196 (46.94%), Query Frame = 2 Query: 233 VRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814 VR FPHERGNW THV++P F + +A + H + R+ P +V + HLSLS++ LR H I PFV+ LKE V S + F TA V Y NE+KTR+FV L V G L+L+++VD +M F + +Y++P H+S+A +GD Sbjct: 20 VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 166
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A7J7SDP4_MYOMY (U6 snRNA phosphodiesterase n=3 Tax=Myotis TaxID=9434 RepID=A0A7J7SDP4_MYOMY) HSP 1 Score: 99.0 bits (245), Expect = 3.170e-20 Identity = 75/246 (30.49%), Postives = 105/246 (42.68%), Query Frame = 2 Query: 83 KPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814 +P V LPS+ L + E D A R VR FPHERGNW THV++P F + +A + H + R+ P +V + HLSLS++ LR H I PFV+ LKE V S + F TA V Y NE+KTR+FV L V G L+L+++VD +M F + +Y++P H+S+A +GD Sbjct: 35 RPRVQSPLPSQRLPVPDSVLHMFAGTEEGPEDDSAKHGGR----------VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 221 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.758.1 >prot_Ecto-sp6_S_contig100.758.1 ID=prot_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=357bp MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRback to top mRNA from alignment at Ecto-sp6_S_contig100:553986..557743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3758bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:553986..557743+ >mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371)back to top |