Homology
BLAST of mRNA_Ecto-sp6_S_contig100.751.1 vs. uniprot
Match:
D7FRM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRM1_ECTSI)
HSP 1 Score: 442 bits (1138), Expect = 1.250e-146
Identity = 296/481 (61.54%), Postives = 302/481 (62.79%), Query Frame = 1
Query: 346 MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAVDIGKGSTATAAPMAKTKPLLRKTLPVPVLEVSIVREKRISGGPFKQDGVASAAVDAETTSVAATAREPAAGGGGADRIGFRQLLSTKKPEQQLLRSGSAPDPPTTTLRIASKMTTGVPTYQLAEVRPHLLPGRGKVECAPSELKVDFAGTTRGCWGESRDSIVPVGAVSRSQDGIAPTSGNTAAKPTAAKVLPLLSPEQDLTDKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQAPSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHRKQVEAETEAARXXXXXXXXXXXRRILAERNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKDFKAYSLEQEKRVTQAAAPDVPDLQPAVDNVTPPRQ 1788
MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAV+IGKGSTATAAPMAKTKPLLRK LPVPVLE ++ C VLPLLSPEQ+LT KGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQ PSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEH XXXXXX RRILAE NNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEK+FKAYSLEQE RVTQA+APDVPDLQPAVDNVTPPRQ
Sbjct: 1 MSVSGSKPAFSPKPPPQPSPQGGLAKQGVSAQDALVGSNRIEPAVEIGKGSTATAAPMAKTKPLLRKPLPVPVLE--------------------------------------------------------------------------------------------------------RLNCP------------------------------------------------RRSVLPLLSPEQELTGKGVGKLKQRLAPLHRRKSDVDGRFRRRSRNLSSAQRKPASSGQEPSLARRRSTTPDASRPSTTSNTNTAREGVPSSRTSFSSETATDPGADQAQLKARLRVMEWKRRRAEELESQQEEQATQEHXXXXXXXXXXXXXXXXXXAEEAERRILAEHNNSADAVRASEAAERWAKASRERERRRAEIYAINAVMRAAFEKEFKAYSLEQENRVTQASAPDVPDLQPAVDNVTPPRQ 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.751.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.25e-146 / Id = 61.54 Sequence D7FRM1_ECTSI
Match Name E-value Identity Description
D7FRM1_ECTSI 1.250e-146 61.54 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 2429 Hectar predicted targeting category mitochondrion Exons 5 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_002530.1 Cds size 1617
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348726.2011752-UTR-Ecto-sp6_S_contig100:494344..494518 1682348726.2011752-UTR-Ecto-sp6_S_contig100:494344..494518 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 494345..494518 + 1682348726.263696-UTR-Ecto-sp6_S_contig100:497865..498503 1682348726.263696-UTR-Ecto-sp6_S_contig100:497865..498503 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 497866..498503 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348726.212581-CDS-Ecto-sp6_S_contig100:494518..494585 1682348726.212581-CDS-Ecto-sp6_S_contig100:494518..494585 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 494519..494585 + 1682348726.2215579-CDS-Ecto-sp6_S_contig100:494890..495700 1682348726.2215579-CDS-Ecto-sp6_S_contig100:494890..495700 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 494891..495700 + 1682348726.2311282-CDS-Ecto-sp6_S_contig100:496350..496676 1682348726.2311282-CDS-Ecto-sp6_S_contig100:496350..496676 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 496351..496676 + 1682348726.2397459-CDS-Ecto-sp6_S_contig100:497010..497297 1682348726.2397459-CDS-Ecto-sp6_S_contig100:497010..497297 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 497011..497297 + 1682348726.248554-CDS-Ecto-sp6_S_contig100:497738..497865 1682348726.248554-CDS-Ecto-sp6_S_contig100:497738..497865 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 497739..497865 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.751.1
>prot_Ecto-sp6_S_contig100.751.1 ID=prot_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=539bp
MTLISLRWSSASNRVPTRGAGRARAASQRSLSNSNVPARRQEKPRDISTS back to top mRNA from alignment at Ecto-sp6_S_contig100:494345..498503+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.751.1 ID=mRNA_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4159bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:494345..498503+ (Ectocarpus species6 EcLAC_371)TCTCCCATCTATCTCCAAAATGCGGCATAATGAATGCTGAATCGTAACAT
ATCCCGCCGCAACTTCGCTGCCCGTGTCTTCGTGTCTTCGCGTTTTCGCC
TTTCGCCTTGCAGCCTTGCAGCAGATGGGGCGCTGTGATTTGCTCAGCGG
GTCGCGAGTTGCCCGCTGGCAGCG ATGACGTTGATCAGTCTCAGGTGGTC
ATCTGCTTCAAACCGAGTCCCAACAAGGGGCGCTGGTCGAG GTGCGCACT
TTTGTGTCTGCAATGTCAGAGTTTCGCGAGTGAATGAAAACAACCAACAC
TCGATCCCACTCGTGACCCGCACAGCTTGAGGTACTGATAACTTCGAGCG
GATTATGCGTCATTCGCACGCGTCTCTTTGATGCTCAGGGTCACAGGCCG
CAAGCGTCTTGGGCCTGGGGTTTTAGTTGATCCGCTGTGCGTGCATCTTG
GCCATCATCATCATCGTTATTTAATTCGGCCGCCATCCTTCGTCGGAAGT
CCACAATAACATCTTTTCTCCCTCGCATTTTCCACCGCAACACCAGCAAG
AGCCGCTAGCCAGCGATCTCTGTCCAATAGCAACGTCCCAGCAAGACGGC
AGGAGAAGCCGCGAGATATATCTACGAGCAGGTGGAGGTTGTCCAGGAGT
ATGAGCGTCTCTGGTTCCAAGCCGGCCTTTTCACCCAAACCACCACCACA
GCCATCACCCCAAGGGGGGTTAGCAAAGCAGGGTGTCAGCGCTCAGGATG
CATTGGTGGGTTCAAATAGAATAGAACCTGCTGTAGACATCGGCAAAGGG
TCAACAGCAACAGCAGCACCTATGGCCAAGACCAAACCTCTTCTTCGAAA
AACCCTCCCAGTCCCGGTGCTGGAGGTGAGTATTGTGCGCGAAAAGCGAA
TCTCGGGCGGTCCCTTCAAGCAAGACGGTGTGGCTTCTGCTGCGGTGGAT
GCGGAAACAACATCTGTGGCAGCCACTGCGCGAGAACCTGCTGCTGGGGG
CGGTGGCGCCGATAGGATTGGTTTTCGGCAATTGCTGTCGACAAAAAAAC
CAGAACAACAACTTTTACGGTCGGGGTCAGCACCTGACCCGCCGACGACG
ACACTCAGAATCGCTTCGAAAATGACCACTGGTGTACCTACATATCAGCT
AGCAGAGGTAAGGCCACACCTGCTTCCCGGACGGGGCAAGGTTGAGTGTG
CACCCTCTGAGCTCAAGGTGGATTTTGCTGGAACAACTCGGGGTTGTTGG
GGCGAGAGCAGAGACTCAATTGTCCCTGTCGGAGCGGTGAGTCGTTCCCA
GGATGGGATAGCACCTACTAGCGGAAACACAGCGGCCAAGCCAACTGCAG
CGAAAG GCAAGTAAAAGCAGTCCAGGCTATGTAAACATATCCATATTTCT
CGCGGTTTTAGTTTGGGTGGCAGCCGAAACGGCCGTCAATTGTGAAACCT
CCCTCCGATTCCTCTTTGACAGAGGCAACATGCCCCAAGTTCAGATCACT
TTTTTGGCGAGTGCGTGCTTGGTTTTGCTTGGTTTACGGTGTGAATGTGA
ATGTGAACCAGACACCGTTGTCTCCTACCAAAGAAGACAGAATCCCCCAA
AAGTTGGAACTTCAAGTCTCAGCGTTAATAGTCCTGTTGTGTCCTGGGGT
CATACTGCGGGAGGGAGTCATAGGAAAGGAAGTGTTCATAAGATTGATTA
GTTTCACTGAGGTGTTCTACTCCACACGAAACAATCGAGGTAACACATGA
GAGATATGTCGATCCTTAAAGTGCGTCACACAACAACAGAGGAGAGGACC
TTCTGAACCCTTCTCACTTTAAAATTGAAGGCACACAACGCAGGAGGAAA
CGCCAAAGAAATAAAATTTCCTGAGGGACGATTCCCTGTGTGACCCCGGC
TGGTGCGTCAAACACGTACACCGTAAGGTGTAGACTTACCCCCGGATATG
TGGGGCGAAAACACACGATTCCTAACCGTTCGCACGCCTCGTTCGTACTC
TGCCAGTGCTACCGCTGCTCTCACCAGAGCAAGACCTTACGGACAAAGGT
GTAGGCAAGTTGAAACAGCGGCTCGCGCCATTGCATCGAAGGAAATCCGA
CGTGGACGGTCGCTTTCGTAGAAGATCCCGTAACCTCAGCAGTGCCCAGA
GAAAGCCTGCCTCGTCGGGCCAAGCGCCCAGCTTGGCGAGACGAAGGAGC
ACTACCCCTGATGCATCCCGACCGAGCACTACCAGCAACACAAATACGGC
ACGTGAAGGAGTGCCAAGCAGCCGGACGTCCTTCAGCAGCGAGACCGCGA
CGGACCCGGGGGCTGATCAGGCCCAACTGAAG GTATCCTTTTGAAAAATT
GTCCCTTGTTCCTGAACATACAGACAGACTTGCATTCATTGCAGTCCTGG
GTGTACGCGAGGAAGTTTGCGTATGAAGCGACTGGTGCCCCAAGCATAGC
GCACCTCCGGGGCTAGCAGCCGCCAAATTTCTGAGCCGCCAAAAGGGGGC
TTAGTCTCTTGGTGATCAGTACGTTACTCACCCCCTCTACGGCAGAACCA
AGTACCACGTGCATACACCTGACGATGGTGGAGGTTTGGTAGCGCTGGCG
CCGGATTCGTGTGTGTCAGGCGTCGAAACTGCAAGGTTGTTTCCAACTTC
GTCCGCTTTCGAACAGGCACGGTTACGGGTGATGGAGTGGAAACGGCGAA
GAGCAGAAGAGTTGGAAAGCCAACAAGAAGAGCAGGCTACTCAGGAGCAC
AGGAAGCAGGTAGAAGCGGAGACGGAGGCCGCCAGAAAACTAGCAGCGGC
CCGAGCCGAAGAGGCGGAGCGACGAATTCTCGCTGAGCGTAACAATTCGG
CGGATGCCGTCCGAGCGTCAGAAGCCGCCGAGAGGTGGGCTAAGGCTTCG
CGGGAGAGAGAACGTAGAAGGGCGGAGATATACGCTATCAACGCGGTCAT
GAG GTAGGGGCACGTTTTTTTCGTTTTTTCCAATCTCGAACTGACTGAGG
AAAACTGTAGGCAAGTGCATTCATGATGGTCATACGGACGTGCAATTACT
TCATAGTCTCTAATCTTTATGCTGTTGTGACAAGCAAGGGACCTATCGTT
GGCTGCGGCGGCAGCACGTCTGTGAACGGGGTGTTATTGTCATGGGCAGC
TTGATTCGTACGAAGGGAGTCATGCCAAACGTTGACCTGCTCATTTTACG
AAAGTCCGCCAGCTTCAACTCACTCCAGTCATGCCAAAGCTCAAATCCTT
AGTTTCTGCGAATAGTCTAGCCAGCTAGGAACCGTTTACTTAGCTTGGAA
CTGCTTTATTTTATGCCCGAGCGCCTGACCAGTTTGCTCAGTACATCTGA
CCCAGGGTTCTTTCGTGTTTTTTCCTTTTCGTTCGAAATTTCAGAGCCGC
TTTTGAAAAGGACTTCAAGGCATATAGCTTGGAACAAGAGAAGCGTGTGA
CGCAGGCAGCTGCGCCCGACGTGCCAGATCTACAGCCTGCTGTGGACAAT
GTGACCCCTCCGCGACAGTAG TAGTGCTACCATGGGTTTGTCCTGATGTT
TCTTGGGGCAGCGAGAGGAGACAGCATTACGTTGACGGGGGCATTGGGGG
ACGATAGTGATTGGTCGTTTCTATTTACAGTTAAGTTTACCTAGTTTAAC
GTACATGTGAAATAGAATATTACCTTTTTTTTGTTTTCCTTTCGCGAGTG
GGGACTGCCTGCGTTTAACGGGCCACACGAGCTTTGCTCTACAGGCTTGC
TTGATTGATTGGAGTTGTTTCAATTCTTGTATCGTCGGAGGCCCCTTGTT
GAGTGCTGTAACACAAATTGTACTTAAGTCTTGAGGTTGTGGTACTATTA
AGGGCAAGTGTCTCGTACACTCCTATAGTGCACTACCTGGCGCTGGCTAG
ATTTTTTGGTTTTGTGCAGACGTGCCTCCTCATTCGTGCGTTCTACACAG
CAGGTGGGAGAGAGGGTGTGGAGAGACAACACCACCAGTAGATGAAAACC
TTGTGCTTTTGGGCTCCTTTGAAGCCGACATTCTGTGTGTGAATAGTATG
CGGGTCAATCTGTATTCCGGTTGTATTGGTGTTTTGTTGATTACCATATG
GATGCCTGTGACGTTTTACTCACGCAAGGGAAATCAATCGTGCAAAGCTG
TAGAAAGAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:494345..498503+
>mRNA_Ecto-sp6_S_contig100.751.1 ID=mRNA_Ecto-sp6_S_contig100.751.1|Name=mRNA_Ecto-sp6_S_contig100.751.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:494345..498503+ (Ectocarpus species6 EcLAC_371) back to top