Homology
BLAST of mRNA_Ecto-sp6_S_contig100.746.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI) HSP 1 Score: 355 bits (911), Expect = 8.250e-119 Identity = 238/241 (98.76%), Postives = 240/241 (99.59%), Query Frame = 1 Query: 1 MSDQATDKHAVADDGEVGIEEEVRDFAARFARLVVSSAFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 723
MSDQATDK+AVADDGEVGIEEEVRDFAARFARLVVS +FREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL
Sbjct: 1 MSDQATDKNAVADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.746.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FRM6_ECTSI | 8.250e-119 | 98.76 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1308 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-12_002480.1 |
| Cds size | 726 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348725.6373622-CDS-Ecto-sp6_S_contig100:465181..465682 | 1682348725.6373622-CDS-Ecto-sp6_S_contig100:465181..465682 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 465182..465682 + |
| 1682348725.647978-CDS-Ecto-sp6_S_contig100:465991..466216 | 1682348725.647978-CDS-Ecto-sp6_S_contig100:465991..466216 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 465992..466216 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348725.6571321-UTR-Ecto-sp6_S_contig100:466216..466798 | 1682348725.6571321-UTR-Ecto-sp6_S_contig100:466216..466798 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig100 466217..466798 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.746.1 >prot_Ecto-sp6_S_contig100.746.1 ID=prot_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=242bp
MSDQATDKHAVADDGEVGIEEEVRDFAARFARLVVSSAFREGGGAAAADG
GGGGSGSEGGGSATTAAAASATPRPGGAAAAAAAASGDSGRNPGGSSSLR
PGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKL
HALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFG
LGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL* back to topmRNA from alignment at Ecto-sp6_S_contig100:465182..466798+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig100.746.1 ID=mRNA_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:465182..466798+ (Ectocarpus species6 EcLAC_371)
ATGTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCAGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACGGC
GGCGGCGGCGGCAGTGGCAGCGAAGGTGGCGGCAGCGCTACAACCGCGGC
GGCGGCCTCCGCAACTCCGCGTCCAGGAGGCGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCCTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCATTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTATGTGTGTGTGTGTGTTGTGTGTTTTCCTTTGACCGCGCTAGCCGGC
TGACCAAGAAGTTACGGCAGTCGTATGGCGGGACAACAGTTTGCGGGCTC
CCCTGACAAGTGCACGTATGTCTCTATGGGTTAGACGACAATTTAGGTGC
ACACGGGCCGTAGCCGGATGTCAGATAAGCTGCGCTCTCGGTCGTTGCTG
AGTACGTCAACAACTAAATACTTGCAGAGAACGACGCTATTATAGTACAA
GTGCTTTGAAATAATGCTCTTGATGAAGCAGTGCTGCTGTCCTCCCGACC
CCCTCGACAGGTGGACGCGACGGTCAAGCGGATGGAGAAGGCCGTCTACG
ATCTCGAGGAGATGAGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGG
TCGTTTGGGCTGGGGTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGAT
GAAAGAGAAGGGCGTCACCGTGCCGGAGGTCTTCGACACAGACAAGCTCT
TCCGAGTCGAGGAAGGTGGTTTGGCTCCTCTTTGAGACGAACGGGCAGGG
GGGGCGATCATAAAGACGTTATTTTTTCTTCGCCCTAGACGTGTTGGCTC
TGTAAGAACAATGCATGAAGGCTTCAAACATGACAATCCACATTGTTGAG
GGATCGGGGGCGATTCCGTCACTTCATTTCCGTCGATGTAAAGCGTGTAA
ATTAAGGTGTGACTGTCCAAAATCTGGGTTTGGTTCGTTCTCTCATTTTT
ACTGTTTCCACGTCTCTTTTGGGTGCTTGGGGACCAGCCATCAGCCGCCG
TCCTTCAATTCTTCCACTCTTGTCGTGTATGTATCGCAATGGCCTCGTGG
AAAGGAAAGATTTTGAGACCAACACGAATCTCGTTGGTGGACATGTTCAG
ACTCTTGTAAAGAGACAAGAGTCAGGTGCATCCTAGGTGCATGCTCCGAA
GGAGAATGTTAGAATGTTACGATCCGCCGCGGCACCTTCGATGCTTTTGA
TCGATCCACGTCCTTTGCCGAAGTGTCCGTTCTCTTCAGGGAGTGAGTGA
TTGCCCAACTAAAAAACTCGGAGCTGGCGCCTGTTGGCTACAAGGATCGC
TGCGAACCAAAGACAAA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig100:465182..466798+ >mRNA_Ecto-sp6_S_contig100.746.1 ID=mRNA_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:465182..466798+ (Ectocarpus species6 EcLAC_371)
ATGTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCAGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACGGC
GGCGGCGGCGGCAGTGGCAGCGAAGGTGGCGGCAGCGCTACAACCGCGGC
GGCGGCCTCCGCAACTCCGCGTCCAGGAGGCGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCCTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCATTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTGGACGCGACGGTCAAGCGGATGGAGAAGGCCGTCTACGATCTCGAGG
AGATGAGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGGTCGTTTGGG
CTGGGGTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGATGAAAGAGAA
GGGCGTCACCGTGCCGGAGGTCTTCGACACAGACAAGCTCTTCCGAGTCG
AGGAAGGTGGTTTGGCTCCTCTTTGA back to top
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