Homology
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
D7FRM9_ECTSI (40S ribosomal protein S28 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM9_ECTSI)
HSP 1 Score: 134 bits (336), Expect = 7.720e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 2 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 66
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
F0XVZ1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVZ1_AURAN)
HSP 1 Score: 122 bits (305), Expect = 4.170e-35
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 1
Query: 4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
D IKLAK+N+VLGRTGNTGNVTQVRVEF+DDP RSIIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 2 DTAPIKLAKINRVLGRTGNTGNVTQVRVEFIDDPNRSIIRNVKGPVREGDILCLLEWEREARRLR 66
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
A0A836CPG2_9STRA (40S ribosomal protein S28 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG2_9STRA)
HSP 1 Score: 114 bits (286), Expect = 3.220e-32
Identity = 53/61 (86.89%), Postives = 60/61 (98.36%), Query Frame = 1
Query: 16 IKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
+KLAKV++VLGRTGNTGNVTQVRV+F+DD +R+IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 5 VKLAKVSRVLGRTGNTGNVTQVRVDFMDDSSRTIIRNVKGPVREGDILCLLEWEREARRLR 65
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
A0A4D9CYK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYK0_9STRA)
HSP 1 Score: 111 bits (278), Expect = 5.510e-31
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1
Query: 4 DNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
D+Q +KL KV V RTG+TGNVTQVRVEFLDDPTRSI RNVKGPVREGD+LCLLEWER+ARRLR
Sbjct: 2 DSQQVKLVKVKSVEARTGSTGNVTQVRVEFLDDPTRSIRRNVKGPVREGDVLCLLEWERDARRLR 66
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
B7GCW6_PHATC (Predicted protein n=4 Tax=Naviculales TaxID=38748 RepID=B7GCW6_PHATC)
HSP 1 Score: 110 bits (275), Expect = 1.620e-30
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1
Query: 10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLD--DPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 3 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDAEGAGRSIVRNVKGPVREGDILCLLEWEREARRLR 67
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
A0A7S0CCP2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCP2_9STRA)
HSP 1 Score: 110 bits (274), Expect = 6.580e-30
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT------RSIIRNVKGPVREGDILCLLEWEREARRLR 198
Q +KLAKV++VLGRTGNTGNVTQVRVEF+DD RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 36 QPVKLAKVSRVLGRTGNTGNVTQVRVEFMDDGNAGGQAGRSIVRNVKGPVREGDILCLLEWEREARRLR 104
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
K3WAC4_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WAC4_GLOUD)
HSP 1 Score: 107 bits (267), Expect = 2.700e-29
Identity = 53/59 (89.83%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 22 LAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
LAKV VLGRTGNTGNVTQVRVEFL D R IIRNVKGPVREGDILCLLEWEREARRLR
Sbjct: 9 LAKVVNVLGRTGNTGNVTQVRVEFLQDDKRKIIRNVKGPVREGDILCLLEWEREARRLR 67
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
K0SWS9_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=K0SWS9_THAOC)
HSP 1 Score: 109 bits (273), Expect = 1.190e-28
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 1
Query: 10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
Q +KLAKVN+VLGRTGNTGNVTQVRVEF+D RSI+RNVKGPVREGDILCLLEWEREARRLR
Sbjct: 129 QPVKLAKVNRVLGRTGNTGNVTQVRVEFMDADAGTGTGRSIVRNVKGPVREGDILCLLEWEREARRLR 196
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
A0A2R5G0Q3_9STRA (40S ribosomal protein S28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0Q3_9STRA)
HSP 1 Score: 105 bits (261), Expect = 2.540e-28
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 1
Query: 10 QGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREGDILCLLEWEREARRLR 198
Q + LA+V +VL RTG TGNVTQVRVEFLDD RSIIRNVKGPVREGD+L LLEWEREARRLR
Sbjct: 10 QAVMLARVTRVLSRTGATGNVTQVRVEFLDDDPRSIIRNVKGPVREGDVLTLLEWEREARRLR 72
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Match:
A0A1E7FGX9_9STRA (Ribosomal protein S28e (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGX9_9STRA)
HSP 1 Score: 104 bits (260), Expect = 2.990e-28
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 19 KLAKVNKVLGRTGNTGNVTQVRVEFLDDPT-----RSIIRNVKGPVREGDILCLLEWEREARRLR 198
KLAKV+KVLGRTGNTGNVTQVRVEF+D + RSI+RNVKGPVRE DILCLLEWEREARRLR
Sbjct: 1 KLAKVSKVLGRTGNTGNVTQVRVEFMDAESGAGSGRSIVRNVKGPVRENDILCLLEWEREARRLR 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.743.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 7.72e-40 / Id = 100.00 Expect = 4.17e-35 / Id = 89.23 Expect = 3.22e-32 / Id = 86.89 Expect = 5.51e-31 / Id = 81.54 Expect = 1.62e-30 / Id = 84.62 Expect = 6.58e-30 / Id = 79.71 Expect = 2.70e-29 / Id = 89.83 Expect = 1.19e-28 / Id = 80.88 Expect = 2.54e-28 / Id = 80.95 Expect = 2.99e-28 / Id = 81.54 Sequence D7FRM9_ECTSI F0XVZ1_AURAN A0A836CPG2_9STRA A0A4D9CYK0_9STRA B7GCW6_PHATC A0A7S0CCP2_9STRA K3WAC4_GLOUD K0SWS9_THAOC A0A2R5G0Q3_9STRA A0A1E7FGX9_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 0 Seed ortholog score 134.8 Seed ortholog evalue 1.5e-29 Seed eggNOG ortholog 2880.D7FRM9 Preferred name rps28 Model size 201 KEGG rclass RC00003,RC03279 KEGG ko ko:K02493,ko:K02979,ko:K07767,ko:K08767 KEGG Reaction R10806 KEGG Pathway ko03010,ko03320,ko04979,map03010,map03320,map04979 KEGG Module M00177,M00179 Hectar predicted targeting category other localisation GOs GO:0000028,GO:0000309,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0003824,GO:0004515,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009888,GO:0009987,GO:0010467,GO:0012505,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019538,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034627,GO:0034628,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035220,GO:0035295,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0046034,GO:0046483,GO:0046496,GO:0048513,GO:0048731,GO:0048856,GO:0051186,GO:0051188,GO:0055086,GO:0060429,GO:0065003,GO:0070013,GO:0070566,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0072521,GO:0072524,GO:0072525,GO:0090304,GO:0090407,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990904,GO:1990966 Exons 2 EggNOG free text desc. ribosomal protein EggNOG OGs COG2053@1,KOG3502@2759 EC 2.1.1.297,3.6.4.3 Cds size 201 COG Functional cat. J Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE br01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03012,ko04147,ko04812
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348725.3857667-CDS-Ecto-sp6_S_contig100:452024..452147 1682348725.3857667-CDS-Ecto-sp6_S_contig100:452024..452147 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 452025..452147 - 1682348725.3976388-CDS-Ecto-sp6_S_contig100:453175..453253 1682348725.3976388-CDS-Ecto-sp6_S_contig100:453175..453253 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 453176..453253 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.743.1
>prot_Ecto-sp6_S_contig100.743.1 ID=prot_Ecto-sp6_S_contig100.743.1|Name=mRNA_Ecto-sp6_S_contig100.743.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=67bp
QDNQGIKLAKVNKVLGRTGNTGNVTQVRVEFLDDPTRSIIRNVKGPVREG back to top mRNA from alignment at Ecto-sp6_S_contig100:452025..453253-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.743.1 ID=mRNA_Ecto-sp6_S_contig100.743.1|Name=mRNA_Ecto-sp6_S_contig100.743.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1229bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:452025..453253- (Ectocarpus species6 EcLAC_371)CAGGACAACCAGGGCATCAAGCTGGCGAAGGTGAACAAGGTGCTCGGCCG
CACCGGTAACACCGGTAACGTGACCCAG GTGAGCCCGTGCTTGACTGTTT
CGAAAAAATACCGTTCTGCCGAGATCACAATCTGCGTGTGGTGTTTGGAA
AGACTCTGCCAATGAAGGCGGAGTCGCCCCTCGTTTCCTGTACGTTTGGT
ATCGACTTTCGTTGCAGACGTGCAGACGCGCGTGAATTCCTCACGGTTTA
CTTTCCTAAGGACCTCTTGCTTCAGCGTGGATATTCCAAGCGCCAGTCTT
GTTGCTATGGTTCCATTGGAGTCCGTTGACAGAATTTCCCCCCCTGAAAC
ATTTTCGCAAAAGTCTATTTGTGCAGGGATTGGGGCGAATGCAAGGGTTT
AGTTCGGACGCCGTCCGCACAGATAAGAGTAGATCAGCAGATCGGGTCAC
GTGGTACTGATTCACTATTGAAATGTCATCACAACGAAAGGAAACGAACG
GCCGTTCGCACGCTCTTTTGGTGGTGCGGCATTTTTTCCAAAGGTCTGTT
TGATCCTGAAACATTTTCGAACCTGATCCATTTTATAGAGCTATTCGTTT
CACCACGTTGGCAAATGACCGCCGCCTTTGTAGTTCGGCATGACTTGTCG
TTCTCCGTCGGGTGCTATTCACTCTCACACGGGAAATTCCTCTCTCGCGT
CATTCTAATACCCACGCGGCTATGACACTGAAACAGCGCCATCCGTAGCA
TCGTGTACATGGTGGTCGATGTGACGGGGTGAACCGGCGATTGTGTTGAC
TTTTTTGGGGGGGAGCGGGTGCAGCCTTGTCCCGGCGAAGCAGAGACAGC
ACAAAAAATTGTGCGAACTGTTTTTTTTGCTCACGTTTCGGAATTTTCCG
GGTTTCTTTGAAACCCGACCCATATCCACGTGCGGTTGGTTTTGCTAAGC
AAGAAAGAGTTCGGACGGCAGTTTGCTTGAAAAATACCGCGAAAGGGCAG
GGCGCTAGTTCACGTGCATGTGAAGCATCTGCTAGCTCGCCGATCTCGGT
TGTTTTGGTGCTCATTTTTGTTTTGTTTGACACTCTGGTCCGTTTGTTGT
GGGCAGGTCCGCGTGGAGTTCTTGGACGACCCTACCCGTTCGATCATCCG
CAACGTCAAGGGCCCCGTCCGCGAGGGCGACATCCTCTGCCTCCTGGAGT
GGGAGCGCGAGGCCCGCCGTCTGAGATAA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:452025..453253-
>mRNA_Ecto-sp6_S_contig100.743.1 ID=mRNA_Ecto-sp6_S_contig100.743.1|Name=mRNA_Ecto-sp6_S_contig100.743.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:452025..453253- (Ectocarpus species6 EcLAC_371) back to top