Homology
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)
HSP 1 Score: 1315 bits (3404), Expect = 0.000e+0
Identity = 731/847 (86.30%), Postives = 736/847 (86.89%), Query Frame = 1
Query: 832 MAQLPGGAQMGRDQGPAANEQHTTWTLKLHRRRIAVLKKRRRAEAATAAQPAAVAPHPGETDGAGSPDCSPASPSGFRPLPLGSSVGDDLGHVSSKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSPPEGGKGEGRGQQPLAENREDQAAERPSEWGATQHDNSVWGAGWGQNGQQALGNGGMQGREDRDEEEEDGEYLPQGYNFSRERRAVMHPKQQQQPSSS--RGRGQDGVTGSTGGAAKVESTPSISFGDFEERAAHWEDEEDDXXXXXXTGGSTGSGKDDVASGPGDAFSPRKGDTQMGEEEGGEGXXXXXX---DVASVVRTLELNNFSNRRVFLEDLRLMPRDDAGRAPPFIVRIGNELDSSLRHTQEXXXXXXXXXXRRYSLAPGTHLEVEVEFKRQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLNAEARRFLPAAHREWFKNPVKGVVATPRANNPFYLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKRVSEANGQHRNGGVGDVVSTDGTDGSHQKLGNAPDFEVQALVSNVSLSQGVVTLLLPHPSSLTAASSSTPGSELYAKTIARAVKAARASAQAXXXXXXXXXXXXEAAMDGWHCRFQLERHGLQFIHYALNRLVMFGDSVSGSSPLRYLFPEPEMLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ 3357
MAQLPGGAQMGRDQGPAANEQHT WTLKLHRRRIAVLKKRRRAEAAT AQPAAVAPHPGETDGAGSPDCSPASPSGFRPLPLGSSVGDDLGHVSSKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSP EGG+G GRGQQPLAEN EDQAAERPSEWGATQHD+SVWGAGWGQNGQQ LGNGGMQGREDRDEEEEDGEYLPQGYNFSRERRAVMHPKQQ RGRGQDGVTGSTGGAAKVESTPSISFGDFE RAAHWEDE XXXXXX GGSTGSGKDDVASGPGDAFSPRKGDTQMGEEEGGE XXXXXX DVASVVRTLELNNFSNRRVFLEDLRLMPRDDAGRAPPFIVRIGNELDSSLRHTQE RRYSLAPGTHLEVEVEF RQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVL+AEARRFLPAAHREWFKNPVKGVVATPRANNPFYLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAK+VS+ANGQH NGGVGDVVS DGTDGSHQKLGNAPDFEVQ GSELYAKTIARAVKAARAS QA XXXXXXX EAAMDGWHCRFQLERHGLQ PLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ
Sbjct: 1 MAQLPGGAQMGRDQGPAANEQHTMWTLKLHRRRIAVLKKRRRAEAATGAQPAAVAPHPGETDGAGSPDCSPASPSGFRPLPLGSSVGDDLGHVSSKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSPREGGRGGGRGQQPLAENGEDQAAERPSEWGATQHDDSVWGAGWGQNGQQTLGNGGMQGREDRDEEEEDGEYLPQGYNFSRERRAVMHPKQQXXXXXXXXRGRGQDGVTGSTGGAAKVESTPSISFGDFEGRAAHWEDEXXXXXXXXXXGGSTGSGKDDVASGPGDAFSPRKGDTQMGEEEGGEXXXXXXXXXXDVASVVRTLELNNFSNRRVFLEDLRLMPRDDAGRAPPFIVRIGNELDSSLRHTQEEEGGR-----RRYSLAPGTHLEVEVEFNRQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLSAEARRFLPAAHREWFKNPVKGVVATPRANNPFYLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKKVSKANGQHWNGGVGDVVSADGTDGSHQKLGNAPDFEVQ-------------------------------GSELYAKTIARAVKAARASVQAAGXXXXXXXKE-EAAMDGWHCRFQLERHGLQ--------------------------------------PLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQ 772
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
A0A6H5L991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L991_9PHAE)
HSP 1 Score: 741 bits (1914), Expect = 7.720e-256
Identity = 436/575 (75.83%), Postives = 450/575 (78.26%), Query Frame = 1
Query: 112 MASLTEQHQQQQQQHPALFQXXXXXXXXXXSGPLAAIGIAGAAALQNTMVARPQRPLPVTRGPAVVVSPRALLAAPGAAVRGPGSPSPPLSLEGWPSLQAAMASLAPGATVGGPPRALASXXXXXXXXXXXXXXXXXXXXXXXX---QMQPHXXXXXQQVRMQPYFPPQQVFPQPQRQMQXXXXXXXXLMPPSSIPMGPAMFNQPPAHHFQHVGMAPGFVPIQQQQQQQPFQGQMVGPSQALYMAQLPGGAQMGRDQGPAANEQHTTWTLKLHRRRIAVLKKRRRAEAATAAQPAAVAPHPGETDGAGSPDCSPASPSGFRPLPLGSSVGDDLGHVSSKLDQWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSPPEGGKGEGRGQQPLAENREDQAAERPSEWGATQHDNSVWGAGWGQNGQQALGNGGMQGREDRDEEEEDGEYLPQGYNFSRERRAVMHPKQQQQPSSSRGRGQDGVTGSTGGAAKVESTPSISFGDFEERAAHWEDEEDDXXXXXXTGGSTGSGKDDVASGPGDAFSPRKGDTQMGEEEGGEG 1827
MASLTE HQQ HPALFQ SGPLAAIG+AGAAALQNTMVA P++PLP TRGPAVV S RALLAAPGAAVRGPGSPSPPL EGWPSLQAA ASLAPGATVGG PRALAS QMQPH QQVRMQPY P QQVFPQ QRQM+ LMPPSSIPMGPAMFNQPP HHFQHVGM PG VPIQQQQQ PFQGQMVGPSQ LYMAQLPGGAQMGRDQGPAANEQHT WTLKLHRRRIAVLKKRRRAE AT AQPAA AP PGETDGAGSP+CSPASP GFRPLPLGSSVGDD GHVSSKLD+WTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSP EG KG GRGQQPLAEN +DQAA+ PSEW ATQH +SVWGAGWGQ+GQ LGNGGMQGRED DEEEEDGEY+P G +RG +DGVTGSTG AAKVESTPSISFGDFEERAAHWEDE XXXXXX STGSGKD+VASG GDA SP KGD QMGE EGGEG
Sbjct: 1 MASLTEHHQQH---HPALFQQQ--------SGPLAAIGVAGAAALQNTMVAYPRQPLPATRGPAVVTS-RALLAAPGAAVRGPGSPSPPLPHEGWPSLQAATASLAPGATVGGLPRALASPPPPPGVIDIDGACQQYQRQPHQAPSMQMQPHMQHHHQQVRMQPYLPLQQVFPQHQRQMRPIPQQQQQLMPPSSIPMGPAMFNQPPTHHFQHVGMTPGVVPIQQQQQ--PFQGQMVGPSQDLYMAQLPGGAQMGRDQGPAANEQHTKWTLKLHRRRIAVLKKRRRAEVATGAQPAAGAPRPGETDGAGSPNCSPASPGGFRPLPLGSSVGDDSGHVSSKLDRWTVSLGGALASNTEVCDYVTKGKYGVVLSLGEDPEPPVVDFGDVATVVPSPREGRKGGGRGQQPLAENGQDQAAKGPSEWEATQHADSVWGAGWGQDGQPTLGNGGMQGREDGDEEEEDGEYVPHG---------------------ARGVTRDGVTGSTGRAAKVESTPSISFGDFEERAAHWEDEXXXXXXXXXXXXSTGSGKDNVASGSGDALSPTKGDAQMGEAEGGEG 540
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE)
HSP 1 Score: 629 bits (1621), Expect = 3.940e-206
Identity = 348/424 (82.08%), Postives = 359/424 (84.67%), Query Frame = 1
Query: 2134 LALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLNAEARRFLPAAHREWFKNPVKGVVATPRANNPFYLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKRVSEANGQHRNGGVGDVVSTDGTDGSHQKLGNAPDFEVQALVSNVSLSQGVVTLLLPHPSSLTAASSSTPGSELYAKTIARAVKAARASAQAXXXXXXXXXXXXEA--------------AMDGWHCRFQLERHGLQFIHYALNRLVMFGDSVSGSSPLRYLFPEPEMLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAS 3363
L VV+ PP P R LG RLLAQAVDGRAAAVLNAEARRFLPAAHREWFK PVKGVVATPRANNPFYLPRLRSL+VLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGV+VGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPST +VGR+EVPGVLESRPRLA+GDVVRLRPPAQA GAK+VSEANGQHRNGGVG VVS DGTDGSHQKLGNAPDFEVQALVSNVSLSQGVVTLLLPHP SLTAASSST GSELYAKTIARAVKAARAS QA XX XXX + G CR +FIH+ALNRLVMF DSVSGSSPLRYLFPEP+MLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAS
Sbjct: 64 LVKPVVETFPPPLP---------RLICLG-RLLAQAVDGRAAAVLNAEARRFLPAAHREWFKCPVKGVVATPRANNPFYLPRLRSLEVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVKVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTVVVGRLEVPGVLESRPRLAIGDVVRLRPPAQAIPGAKKVSEANGQHRNGGVGGVVSADGTDGSHQKLGNAPDFEVQALVSNVSLSQGVVTLLLPHPGSLTAASSSTAGSELYAKTIARAVKAARASKQAAXXGGXXXAAAAVRTRRRLRWTDGTAGFSWSGMACR--------RFIHHALNRLVMFEDSVSGSSPLRYLFPEPDMLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAHGQAS 469
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
W7TFX9_9STRA (Rna helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX9_9STRA)
HSP 1 Score: 97.4 bits (241), Expect = 7.950e-17
Identity = 75/251 (29.88%), Postives = 120/251 (47.81%), Query Frame = 1
Query: 2068 HLEVEVEFKRQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLNAEARRFLPAAHREWFKNPVKGVVATPRANNPF----------YLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGD---PSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKR 2781
H+ ++VE ++++ KW+ + P + H +FVLG +++A D A A+LN EAR F+P R +F P +V+ P +PF YLP + +P+ +++ FL +++ + + AL G+ P + +Y A+++LEE+Q DV +YDL V +T YRE P+T +V + VPG E RP LA GD VRLRP + G+ R
Sbjct: 378 HVTIKVE--PESESRIVKKWVLFRIETPGMGPAHDFQYH-------SFVLGRKVVASVADRAAQALLNVEARAFVPQGLRRYFDEPCN-MVSHPDEPSPFQPVGMANVLRYLPH--------YFLPDDIRRAFLGFRAAKLS----ERSDPYALFGIVKSPTTVLEYCRNMRAMLYLEEAQAGEDVRRYDLFGVPIT-----YREKSKDKPNTPLVATISVPGAAEKRPPLAYGDCVRLRPSSLPAIGSGR 601
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
A0A4D9D490_9STRA (RNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D490_9STRA)
HSP 1 Score: 95.9 bits (237), Expect = 2.970e-16
Identity = 89/332 (26.81%), Postives = 145/332 (43.67%), Query Frame = 1
Query: 1864 RTLELNNFSNRRVFLEDLRLMPRDDAGRAPPFIVRIGNELDSS----------LRHTQEXXXXXXXXXXRRYSLAPGT---HLEVEVEFKRQNQAGFCGKWLTLALSVVDPSPPNQPLLHLVDRVERTFVLGTRLLAQAVDGRAAAVLNAEARRFLPAAHREWFKNPVKGVVATPRANNPF----------YLPRLRSLDVLEFEVPEAVQKRFLQGAESRVPWLVRDHREIMALAGVEVGPGRLDDYVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGD---PSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKR 2781
R L + N L ++ ++P+D+ A V +G + SS LR L GT H+ ++VE ++++ KW+ + P + H +FVLG +++A D A A+LN EAR F+P R +F P +V+ P +PF YLP ++ +P+ +++ FL +++ + + +L G+ P + +Y A+++LEE+Q DV +YDL V +T YRE P+ +V + VPG E RP LA GD VRLRP + G+ R
Sbjct: 106 RLLRIVNDCPGPYVLREVLILPKDETTSACWIEVEVGGWIFSSQSGRMPWKRSLREMSPSREEKFWTGAPEILLCFGTSDAHVTIKVE--PESESRIVKKWVLFRIETPGMGPAHDFQYH-------SFVLGRKVVASVADRAAQALLNVEARAFVPQGLRRYFDEPCN-MVSHPDEPSPFQPVGMANVLRYLP--------DYFLPDDIRRAFLGFKAAKLS----ERSDPYSLFGIVKSPTTVLEYCRNMRAMLYLEEAQAGEDVRRYDLFGVPIT-----YREKSKDKPNAPLVATISVPGAAEKRPPLAYGDCVRLRPSSLPAIGSGR 410
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Match:
A0A835YTD6_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD6_9STRA)
HSP 1 Score: 95.5 bits (236), Expect = 4.790e-16
Identity = 112/323 (34.67%), Postives = 143/323 (44.27%), Query Frame = 1
Query: 2500 AGVEVGPGRLDD------YVARYSALMWLEESQMSWDVHQYDLHDVRVTLDSSRYREGDPSTNIVGRVEVPGVLESRPRLAMGDVVRLRPPAQAKAGAKRVSEANGQHRNG---GVGDVVSTDGTDGSHQKLGNAPDF-EVQALVSNVSLSQGVVTLLLPHPSSLTAASSSTPGSELYAKTIARA-----------------------------VKAARASAQAXXXXXXXXXXXXEAAMDGWHCRFQLERHGLQFIHYALNRLVMFGDSVSGSSPLRYLFPEPEMLPETPLWPLPESSFEWVMPSTNDSQRTAVRDIVTGAH 3351
A V GPG D ++ R L+W+EE QM D+ YD+H VR L +V + V G +E RPRLA+GD VRLR K G R + G G +G V + S G A E A+VS+V L G+V +++P S+ A ++ P L A ARA + R + XXXXXXXXXXXXE A WH RF R GLQF+H AL ++ S+ RYLFP+ MLP L W+ TN+ QR AV DIVT AH
Sbjct: 792 AAVTQGPGSGDQSGVVQRHIDRLRRLLWIEECQMRRDIESYDMHGVRPRLKMH-------GELMVASILVKGAMEHRPRLAIGDEVRLRVSNVGK-GPARGAAVEGDFLQGEAVALGCRVVQTNLNMSMLLDGEAVVVGEAVAVVSSVRLKDGLVKMVMPPESTAVAVAAHAPPGLLPATLNARARRNFQRIVAAHLPPAAPRGVPPPPPRKAPQRKTRVAQXXXXXXXXXXXXXXEDAPPRWHVRFGFSRLGLQFMHAALQ------GAMRSSAAQRYLFPDMAMLPPLTGKQLSPPRVAWINARTNELQRKAVVDIVTRAH 1100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.740.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 6
0 1 Expect = 0.00e+0 / Id = 86.30 Expect = 7.72e-256 / Id = 75.83 Expect = 3.94e-206 / Id = 82.08 Expect = 7.95e-17 / Id = 29.88 Expect = 2.97e-16 / Id = 26.81 Expect = 4.79e-16 / Id = 34.67 Sequence D7FRN2_ECTSI A0A6H5L991_9PHAE A0A6H5KSW5_9PHAE W7TFX9_9STRA A0A4D9D490_9STRA A0A835YTD6_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 1326.2 Seed ortholog evalue 0.0 Seed eggNOG ortholog 2880.D7FRN2 Model size 3378 KEGG rclass RC00379,RC00444,RC00445 KEGG ko ko:K01756,ko:K13983,ko:K18422 KEGG Reaction R01083,R04559 KEGG Pathway ko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130 KEGG Module M00048,M00049 Hectar predicted targeting category other localisation Exons 12 EggNOG free text desc. helicase activity EggNOG OGs COG1112@1,KOG1804@2759 Ec32 ortholog description Probable RNA helicase SDE3 Ec32 ortholog Ec-12_002420.1 EC 3.6.4.13,4.3.2.2 Cds size 3378 COG Functional cat. L Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348725.024489-CDS-Ecto-sp6_S_contig100:426142..426259 1682348725.024489-CDS-Ecto-sp6_S_contig100:426142..426259 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 426143..426259 - 1682348725.0342147-CDS-Ecto-sp6_S_contig100:426815..426929 1682348725.0342147-CDS-Ecto-sp6_S_contig100:426815..426929 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 426816..426929 - 1682348725.0416312-CDS-Ecto-sp6_S_contig100:428097..428349 1682348725.0416312-CDS-Ecto-sp6_S_contig100:428097..428349 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 428098..428349 - 1682348725.0486991-CDS-Ecto-sp6_S_contig100:428687..428913 1682348725.0486991-CDS-Ecto-sp6_S_contig100:428687..428913 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 428688..428913 - 1682348725.0559053-CDS-Ecto-sp6_S_contig100:429854..430082 1682348725.0559053-CDS-Ecto-sp6_S_contig100:429854..430082 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 429855..430082 - 1682348725.0630605-CDS-Ecto-sp6_S_contig100:430561..430671 1682348725.0630605-CDS-Ecto-sp6_S_contig100:430561..430671 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 430562..430671 - 1682348725.0701559-CDS-Ecto-sp6_S_contig100:431212..431318 1682348725.0701559-CDS-Ecto-sp6_S_contig100:431212..431318 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 431213..431318 - 1682348725.0772104-CDS-Ecto-sp6_S_contig100:432118..432237 1682348725.0772104-CDS-Ecto-sp6_S_contig100:432118..432237 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 432119..432237 - 1682348725.084471-CDS-Ecto-sp6_S_contig100:432539..432734 1682348725.084471-CDS-Ecto-sp6_S_contig100:432539..432734 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 432540..432734 - 1682348725.0917125-CDS-Ecto-sp6_S_contig100:432983..433389 1682348725.0917125-CDS-Ecto-sp6_S_contig100:432983..433389 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 432984..433389 - 1682348725.0987182-CDS-Ecto-sp6_S_contig100:433863..434198 1682348725.0987182-CDS-Ecto-sp6_S_contig100:433863..434198 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 433864..434198 - 1682348725.1058426-CDS-Ecto-sp6_S_contig100:434417..435587 1682348725.1058426-CDS-Ecto-sp6_S_contig100:434417..435587 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 434418..435587 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.740.1
>prot_Ecto-sp6_S_contig100.740.1 ID=prot_Ecto-sp6_S_contig100.740.1|Name=mRNA_Ecto-sp6_S_contig100.740.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1126bp
MTQGSRFGERKSPSPGPPRSESLQQQLWQQPGPPVVGMASLTEQHQQQQQ back to top mRNA from alignment at Ecto-sp6_S_contig100:426143..435587-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.740.1 ID=mRNA_Ecto-sp6_S_contig100.740.1|Name=mRNA_Ecto-sp6_S_contig100.740.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=9445bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:426143..435587- (Ectocarpus species6 EcLAC_371)ATGACCCAGGGGTCTAGGTTCGGGGAAAGGAAGAGCCCCAGCCCCGGCCC
ACCCCGCTCGGAGAGTCTTCAGCAGCAGCTGTGGCAGCAACCTGGACCGC
CGGTGGTTGGGATGGCGTCGCTGACCGAACAACACCAGCAGCAGCAGCAG
CAGCACCCAGCGCTTTTCCAGCAGCAGCACCCAGCGCTGGTCCAGCAGCA
GTCAGGGCCACTAGCGGCGATTGGGATAGCAGGAGCCGCCGCGCTCCAGA
ACACTATGGTGGCCCGTCCGCAGCGACCGCTCCCCGTGACTCGAGGCCCC
GCGGTGGTGGTGAGTCCGCGAGCACTGCTAGCGGCCCCCGGGGCGGCAGT
GCGGGGTCCAGGGAGCCCTTCGCCGCCCTTGTCGCTCGAAGGGTGGCCCT
CTCTGCAGGCGGCGATGGCAAGCTTGGCCCCCGGGGCAACGGTCGGAGGC
CCTCCTCGCGCTCTTGCGAGTCCTCCGCCACCCCCAGGAGTCATTGGCGG
GGCTTGCCAGCAGCAGCAGCAGCAGCAGCAAGCGCCGCCGATGCAGATGC
AGCCACACATGCAGCAGCATCACCAGCAGGTTCGAATGCAGCCATATTTC
CCGCCGCAGCAAGTTTTCCCGCAACCTCAGCGGCAGATGCAGCCCTTCCC
GCAACAGCAACAGCAGCTGATGCCGCCATCCAGCATCCCCATGGGGCCTG
CGATGTTCAACCAGCCCCCCGCGCATCACTTTCAGCACGTGGGCATGGCT
CCGGGTTTCGTGCCCATCCAGCAACAACAACAACAACAGCCATTCCAAGG
GCAGATGGTGGGGCCGTCTCAAGCCTTGTACATGGCGCAGTTGCCGGGGG
GGGCGCAGATGGGGCGGGATCAAGGGCCGGCTGCCAACGAGCAGCACACG
ACGTGGACCCTCAAGCTGCACAGACGGAGGATTGCGGTGCTGAAGAAGCG
GCGACGGGCAGAGGCGGCAACCGCGGCCCAGCCAGCAGCAGTCGCGCCGC
ATCCGGGGGAGACGGACGGGGCGGGGTCTCCTGATTGTTCTCCCGCGTCG
CCCAGTGGGTTCCGCCCCTTGCCGCTGGGCTCGAGCGTCGGGGATGACTT
GGGACACGTTTCGAGCAAGCTCGACCAATGGACTGTATCTCTCGGGGGAG
CGCTTGCCTCCAACACGGAG GTAAGTAACTCTTGGCATGGGTTGTGTTGT
TGGCGTGTTTTGGTCCTCCATCGTTTTTTCTTGCACGCACGTGGTGGTGG
GGGGGGGGGCTAGGGGGAGGGGGGTGTTTGCTTGTCGGAGCATCCTTGGG
AGGCAGTATTTAGTAGATGCGCCTTTTCGGTATAATCGTCCCCCTTTTCC
TTCTTCTGAACCGGCATTTGCGGTCCGCCTGACCGGAAGGTGTGCGATTA
CGTCACGAAAGGCAAGTATGGCGTGGTTCTGAGCCTCGGAGAGGACCCGG
AACCGCCGGTGGTCGACTTCGGCGACGTCGCCACGGTGGTTCCGTCCCCC
CCAGAAGGCGGGAAGGGGGAGGGGCGCGGACAGCAGCCTCTAGCTGAAAA
CAGGGAGGACCAAGCGGCCGAGCGACCCTCCGAGTGGGGGGCGACGCAGC
ACGACAACTCCGTGTGGGGGGCGGGGTGGGGGCAGAACGGACAGCAGGCG
CTCGGTAACGGCGGGATGCAAGGGCGAGAGGACCGGGACGAGGAGGAGGA
GGACGGCGAATACCTTCCGCAAGG GTGAGAAGATTTTTTTTGTAGTTTGT
CCTCCTCCGGTGAACAGAGGGCTTGCTGGTGTTGCTCCGCTACTGATTGG
TGCGCAAACAACCAAACGCGCTTGTTTTCGCCGTTTCGTGCTAAATACTC
AACCTCTGGCGGGCTTGTGGATTGAATGAGTAGAGAAGCAGGGGTGCAGG
GCAGGGCGAGGGGGGTCAAGAGGGTGAGAGGTAGCCAGTGACGCCTTTAT
CGGCGAAACCTTTGCCACCCGTGCCTCTTGCATCGTGTAAAGCCACACGC
AAGTCTTGATTGTGCTCCGCCGTGCAATACCGCTGCTACATGCATCAATT
GCTGTACAGTCGCCGTAAACACCCACATTGCGGCTTACTACGTATCCAAA
ACACGATTCCTGGCAGTCGATCGATTTTGACACCTCCGCCGCCGCCGCTC
CCCGTCCGTGTGCCCGATCGTCCCGCTGCCGCCCAACGCTCATCACAGAT
ACAACTTTTCGAGAGAACGGCGGGCGGTCATGCACCCCAAGCAGCAGCAG
CAGCCGTCTTCTTCAAGGGGTCGAGGGCAGGACGGCGTCACGGGCAGCAC
GGGAGGGGCCGCCAAGGTCGAAAGCACCCCCAGCATAAGCTTCGGTGATT
TCGAGGAACGGGCTGCTCACTGGGAGGACGAAGAAGACGACGATGGCGAT
GAGGACGGCACCGGTGGATCCACCGGCTCGGGCAAGGATGACGTCGCTTC
CGGGCCTGGGGACGCGTTTTCTCCGAGGAAGGGGGACACACAGATGGGGG
AGGAAGAGGGCGGCGAGGGGGAGGAGGAGGAGGAGGAGGATGTGGCGAGC
GTGGTGCGGACGCTGGAGTTGAACAACTTCAGCAACAGGCGTGTCTTCTT
AGAG GTGAAGCACCCCACGTTTTTTGTGTTCCGCGTCTCCTCCCCCCGGC
TTCTTTTTTTGTCCTCGGTTGTCGTCCTTTTGCGGTGGGCGGCGCGTGCG
CGATGAGCGCATGCGTGGTGATGTGCATGGTTGCGTGTTTTGGGCACCCC
GGCAGTAATATTACCGCACCAGCACACGGAGGAGACCTAACGGCTTACAT
GACGTATCTCGCTGGGTTTGCGCTTCCGTGTGCGATGCTTGGCGCACCAA
CAGGACTTACGGCTGATGCCTAGGGACGATGCGGGAAGAGCACCCCCCTT
CATCGTGAGGATAGGCAACGAGCTAGACTCGTCTCTGCGGCACACGCAGG
AGGAGGAGGGGGGAGGAGAGGAGGGGGGTCGCAGGCGGTACAGCTTGGCA
CCGGGGACCCACTTGGAGGTGGAGGTGGAGTTCAAGCGTCAAAATCAG GT
ACGACGTAAATGTGTCTTTTGGTTGATGTGATTGTGGAAATCAATCACCA
AAATCAGACACATGCTGTTCTTGTTGTTGAACAAATCGTCTGGTCTGGGC
TCTACGGAGCTGGACGCACCACGGTGTGGAAACTGTCCCCCAACCTTGAC
GGGGTGTACGCCTGCTGCTCTGCCGTCCGTGTGCGTAGCTCTCTATCCGT
TTCGCTGTCTCTCCATTCCGCCATTCATTCCTACCGTCTTTCTCACGCTC
GCGCCCATCTGGCTGTCTTTTTCTGTCTCCGGCGCATTCCTCGGCCACAG
GCAGGGTTCTGCGGAAAGTGGCTGACGCTCGCGCTCAGCGTCGTCGATCC
CTCACCACCGAACCAGCCGCTCCTGCACCTCGTAGATCGCGTAGAGCGGA
CGTTCGTGCTTGGAACCAG GTAGACACACCACTGTTCTCCATTTTCACCT
CTTCCACCACGTGTCGCATAGGATATACCACAAGGGCGACGTCTAGAACC
GCTGCTGGAAGGTTCCATGTGTGACATGATATGATTCCGCTCGTGCCGCA
GTCTGCGTCGAGCAACTGGCCGTTGGTTGGGGGGGGATTGTCACAAGATG
TATGACGCGCGTCCCCCTTCCTAGCCAGCACCGGCAGAGGGAGGAGATGT
TCGAGGGGAAACAATGAGTGCCACGGGGGGCAACAGCTCCAGGAAGGGGC
GATAGAAAGTGCTGGCCGCGCAAACCCCACCTCTCCGTGGAAGTTCATCT
CATAGTTTCGGGCCTCTCGGGCATCCACGAGCAACCCAGTATAAGGAACA
GCAGCAGTTGAGGAACCTACATTCGTACTCGGCAACCTGGCTTGTACGTT
TTGATGGGAAATCCGCCCATCCGAAGAAGAAAAAAGACGCACACACATAC
ACACACACACAGGTCTAACTACAGCAGGCAGGGGGGGGGGGGCATCCAAC
TCTCTGCCGGCCCTATCATGGTCTTGACGATACGGATTTGTTTTTTGGGG
GGGATAGGCAACTCATGGCAGGATACGGTCTACCCGCCGGCGTGCTACAC
CACTTGGCACGAACCCTGGGTTGCGATCTTCGGAACTCGACACCATCTGG
ACAGCAACAGGCTTTGCACCCATACGCAAAAGACACTATGATGGCAGCGA
GTGCTTCTTATGAAACCCGTCGTCGAAACCTTTCCGCCACCGCTACCCGG
TTCTTTTATGTCTGTGTAGACTCTTGGCCCAGGCGGTGGACGGCCGTGCC
GCGGCGGTCCTCAACGCCGAGGCGAGGCGTTTCTTGCCGGCCGCTCACCG
CGAGTGGTTCAAGAATCCCGTCAAG GTAACCGCGGGAACGGGTGGGGCGC
AGCTCGTGCGGAGTTGGAAATAGTTTTGGGGGTTCGGGGTGGGGTGGGGT
TACTGGCTCTGTGAGAACCAGAAAGTCTGTTTTTTTTGTTTTTTTTGGAG
GAGGAGGGGCCCTGTGATGCGGCTTTCTGTTGTAACCTTGCCGGTTCCGG
AATGCTGGTGGTACGGTACAAGAACCATTTGGCCTGGCGGTATGATACAC
GAATTGTATGGCGCCGGAGCCGCGGCTTCCTCTGTTGGTTTGCTGTGTTC
GTGCTTTTCTGCCTGAATTTATGCCTTCTTTGCCAAGTCCAGGGCTCGCG
GCAAGCGGGTTTTACTTCTTCGATTAACGTGCGCGCTATGTACAACTGAC
ATGAAGCCGTACCGTTGGCACAAGCTTTCCAAGCACGCAGCTGATTCCGT
GTGTTCCACGGAAGCACAACCCCGTTCGACTCGATGCCTCTCTGGTGCCG
GGCTTCTTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCT
TCTGCTGCCGCTGCAGGGTGTTGTGGCCACCCCTCGAGCCAACAACCCGT
TCTATCTCCCGCGGCTCAGATCGTTGGACGTTCTGGAGTTTGAGGTGCCG
GAGGCGGTGCAGAAACGGTTTCTGCA GTGAGTGTGTTGCAACGGAGCCTC
ATTTCTTTTGTGTCTCCGACCTCGGGCGATGCGCATCGGTGCAACGTTGG
TCGTGTTGTCAGCCAGCCACGCGCACTCGTTGTTGGTCCCAGCCGTGTGG
CGCAGGCTGTGTCGATTCGAGAGCTTGACAGGGTCGGTGTGCACGAGTGC
TCGCCGGTTTGTGTCGTTCCGTTCAGATGTCGTCCGTCACCTGTCGGTGA
ATAGTATTACATAGTGTGACTCGACACAGAAGGAGTGCATACAGTACATG
CCAACAGAAAAACGCGCGGCCGCGCTGGCAAAAACAGCACATGGCCCGGG
CAGTAGCCAAAAACCATTTTCACCTTCCGTACACAGGGTTACAAGTGCTC
GCTCGTGCTGTTATTCAATACTGGTACCAGACATCCGGTGACACAACCCT
TTTCCGCACACGGCCCGCCCCGTGCCGCCCTGACACTGCGCCACGTCACT
GCCAGGGGCGCGGAGTCGAGAGTGCCATGGCTGGTGCGCGACCACCGGGA
GATCATGGCCCTGGCCGGGGTGGAGGTCGGCCCCGGTCGGCTGGACGACT
ACGTCGCGAGGTACTCGGCCCTCATGTGGCTGGAGGAGAGCCAGATGTCC
TGGGACGTCCACCAGTACGACCTGCACGACGTCAGGGTCACCCTGGACTC
GAGCCGCTACCGAGAGGGTGACCCCTCCACCAA GTGAGGGTGGTGTGTTG
TTCGTTTCTGGCAGCTGCTGCCGCCGCCGCCAGCTGTTGTGTCCGCTCTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTGCGCTTTGGGGA
AGGTGGAGTGCGTCGGTGGAGTTTTGATGGGTACCATTTTTGCACATCTC
CACTGTTTTCGTATATGTTTTCCGGTTTGGAATCCGGGGGGCGCCGTGGG
GCGTTTCTTAAGCCCGTCCGGGGGGCAGGAAAGCCTACGAAAGGCGGTCG
GAAAACAGACCAATTTATGTTGGCACCCAGTGCTCGCCTCACAGGAACGT
GTTTGCACTCAAACCTTCAAGGCTGTATGCTCAGCTCTTGGGAACCAATT
ATGAGGAGCTAGGGTAGAGTATGCACCCATCACGCGTGGTTATACTAGGA
TTCGGTGTGCAACTTCCAATTAGGATTGGCTGTCTGTATTCAAGGCATAC
TCTGCGCACGCGCCACTCTGGTTTATAAAATTTTCCTCCGAGAAGGTCAC
AGTAATGGAGCTTGCAGCCTCGAACGTTTGATTACAAACAGGCCTCCTTG
GGGGCGAGCACTGACGCCATCGTGAGTTGGTGTGCTTTCCAACCACTTTT
CCGCAGTCTTTTCGCTCTCTGTGGGAGTTTTCGAAATGTACCACGGCACC
CCCAGATTCAAGATCGCAAAAATAGTATCTGGCATAGTGGTGCGATCGCT
CGTTGCTTGGACGAATCAGCCAATGAATGTAGGCCGCAAATTTTTGCCTT
GGATGGGTACAAATTTTGGGGAAGAACTGTCAACCGTAAATCGTTTCACA
GAATGCCAGACAAGGCAGCGCCGAGAAGACCGAAATCTCCCCCCAGGTTG
CACAGCTCATCCTTTCCGCGACGCCGCTCGCGCCTCTGCTCTCCTGCTGC
TGTTGTTTGATGTTCCGTACATAGCATTGTTGGCAGGGTAGAGGTACCGG
GTGTGTTGGAGAGTCGGCCCAGGCTGGCCATGGGCGACGTCGTCCGACTA
AGACCGCCCGCTCAAGCGAAGGCGGGTGCGAAGAGGGTGTCCGAGGCGAA
CGGGCAGCATCGGAACGGCGGCGTTGGCGATGTCGTGAGCACTGACGGCA
CCGACGGTTCTCACCAAAAACTGGGAAACGCCCCAGATTTCGAAGTGCAG
GTATGTGGTGTTTGGTTGCCCCTGTTGCGATGGTGTTCTTTGTTGAGGCT
GGTCTGGACACAGCATTTTTAGTATTCTTTTTTTCGGTTTTTACGCGTGT
GGTGTTGCTCTACCACCTCGTCGTCGCTTCGTGGCATCAATAGAAAGTTG
TGCGTCCTCTCGTAAATTAACTCTTCTATTGCTTCAGATTGCCGTTTTCC
CGTTTTTTTTGTGTTTGTTTTGCCGGTTCGGTCGAGCGCGGTTGCATCGC
ATAGAGCGTGCCGAATGGGGGGGTAAGTCGCCGGTGCGCGTGGTGAAGTT
GACCAGATCACACCACGACCGTCTGTTTGTCTCGCTAGGCCTTAGTGAGC
AACGTCAGCTTGTCCCAGGGGGTGGTCACGCTCCTCCTTCCGCACCCCAG
CTCGCTCACGGCGGCCTCGTCGTCGACGCCGGGCTCGGAGCTCTACGCCA
AGACCATCGCGAGGGCCGTCAAGGCCGCGAGGGCCAGCGCGCAGGCGGCC
GGCGGCGGCGGCGGCCGCCGTAAGAACAAGGAGGAGGCTGCGATGGACGG
GTGGCACTGCCGGTTTCAGCTGGAGCGGCATGGGTTGCAG GTGCGACGAT
GGGACGAAGTTTACGCGAAACTCCAGGGCGCAATCAGTTTGTTCTTGTTT
GCGGAAGGGGGCTGATTTTTTGTTTGTTTTCTTACGACTTGGCAGGCCCC
TTCCGTAGAACGACGTGGCAGAAGGATCCTGAGGTCGAGGTAGCTTTAGC
CCGCTGTCGAAGGCAGGCGGGTTTCTCCGATGTTTGGGCAAGGAGAGAGG
GTCCATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGGGC
GGTGTCACATGTGGTTCACCTGCTTATGCCAGCAAGTGGTATGTGGAACC
CCCCGTGCATTCGTCAGTGCCCAAGTTCCCATGGTTCTCAGACCGCTTCT
ACGGATCGATTCTTCCTACACTTTGAACATGTCCACATCGATCCTATGCT
TGCACACTTCTCTGTTTCTGCGTTGAACGTGTGATGGTCATGTTGTGACC
TTGGAATGTGTCTGTAACCACATACATAGCGACGGAAAATGGAGGTGCTG
GGTAGATAGATCAGAAGGAGTAGTTTAGGCACAACAACGATACATGGCTT
GAGGCATGCCGCGGCATGAACCGTGTCCGGTGCCGCTGAGGCTCCTGTAG
CGAAACCGCGGTGGCTTCATGATCGTGATTTTTGCGACGACAGCATCGAT
TGGTGTATGAAATTGTGACGCTTATTTTTTCATGTTGTGGTGGCGGTGTA
CGTTTACATCCAGAAGCCGACGATTTTCGCACCCGCGTCGGAGCCTACAG
TTTCCGTGCATTCGTGAAGTTGGTGGCGAATGCCTCAAAATCGTGTGTTA
TTATTGTGTTGTATCTAGATGGAACCGCACACAGACGTTTCTCGACCCTA
AGAACCAGGAGCCGAGTGCGCACGTGACAGAGAAAAGAAAACTATTAGTG
GGAACAGCAGTAGCCTATTTAGTCCTCGAAGAATTATCCGGAGAGGCAGG
CCGAGGCCCTTCCACCCTCCGCGGTTTGTGTCACCGGTCTCGTCATGCCT
CTTGTTGCCGCCGCTCTTGTGTTCCAATTCCTCCGCTCGTCCTCGCTTGT
TCTCACGATCGTCCATACACTTACCCGTCTCTGGCGCCCGACTTTGCTGC
GGTGGTGCGGATCGATCGATCCTGCGCCCGCCGCCCGTCTCTGGCACGGC
CCGCCCAGTTCATCCACTACGCCCTGAATAGGCTGGTGATGTTCGGGGAC
AGTGTGAGCGGCTCCTCCCCCCTCCGGTACCTGTTCCCCGAGCCAGAAAT
GTTGCCCGAGACTCCGCTCTGG GTGAGCGAAGAAAGTGCTAGCAAGGTTG
TGGTTCTGCTTGCTTGTGTGGGGGGGATTGGGTTACCTGCTGTTCGGGGT
AGGCCAACCAAGCGTGTGAGTTCGGTTTTGTGGGCGGTAGGGTTGCACGG
TGCTCCGGGTCAGCGAGTGGCGTAACAACTGACGTAGGTTCATAGATTTA
GCCCGCACAGAATTGGGCGTAAGGTGGTCAGCTTGTCGCCGATGGCGGGC
AGACGTGGGCTATAGGGGTAAGTTCACGAAAACACGAAAAATTTCACCCC
ATGTCTGGGTCCTGTTTTTGATACTAAATATGGCAGAGGGCGATGTGGGA
AAACCTTATATATATCGACGAGGAGGGTCTGATGTTGACATGCCCACTGA
TGGTCGTGACCATACCCGTCCCCCCCTATCGTCGCTTGGCACAGCCTTCG
TCTCTTCACTAGCGCGGCTTTTTTAGAAAGTAAACATACCCTCACAGAAA
GACTACCCCGGCTTTTTCGACGGGTTTTGCTGCTGCTGCTGCTGCTGCTG
CTGTTGTGGTGTTGTTGTTGGACTGCAGCCTCTTCCGGAGAGCTCGTTCG
AGTGGGTCATGCCTTCCACCAACGACTCTCAGAGGACTGCGGTCAGAGAC
ATCGTCACCGGAGCTCACGGACAGGCAAGTCGCTGCACCTCTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:426143..435587-
>mRNA_Ecto-sp6_S_contig100.740.1 ID=mRNA_Ecto-sp6_S_contig100.740.1|Name=mRNA_Ecto-sp6_S_contig100.740.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3378bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:426143..435587- (Ectocarpus species6 EcLAC_371) back to top