Homology
BLAST of mRNA_Ecto-sp6_S_contig100.737.1 vs. uniprot
Match:
D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI)
HSP 1 Score: 1119 bits (2894), Expect = 0.000e+0
Identity = 601/634 (94.79%), Postives = 604/634 (95.27%), Query Frame = 1
Query: 406 MVRLPNTATFGELLACAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVSGVPVGGFSPKGWGELRLELHVAECTTRNSLQQVAMRDSSQGWSASEFRGAVGVGLPSRGTDVLWSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLLRNGASTVETRPAVVEHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARSGDTLIVGYRVGPGAPPEVMRAVVELEGNAAGDDDAQTADAAISPTHSPSHHRPCGAQRGTVDSSGSSNVDGGIPDQGTSGVESAAVVADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGAMSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGAAAALRGAVGASPLSASTPSADSTNNSADTRRVRVSPAPAVPFRQNATHGVDRVGWRILRGIGAGGASSVYDSPLSSAAARRQQRFIPSVGRPKLKVWARWKYGRRVPTPPVPPAGDGGGRG 2307
MVRLPNTATFGELLA AREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCV GVPVGGFSPKGWGELRLELHVAECTTRNSLQ VAMRDSSQGWSASEFRGAVGVGLPSRGTDVL SPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSL RNGASTVETRP V EHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGAR GDTLIVGYRVGPGAPPEVMR VVELEGNAAGDDDAQ ADAAISPTHSPSHHRPCGAQRGTVDSSGSSN+DGGIP+QGTSGVESAA VADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGA SSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGA AALR VGAS LSASTPSADSTNNSADTRRVRVSP PAVP QNATHGVDR G RILRGIGAGGASS+YDSP QQRFIPSVGRPKLKVWARWKYGRRVPTPPVP AGDGGGRG
Sbjct: 1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTRNSLQ-VAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLHRNGASTVETRPTV-EHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARGGDTLIVGYRVGPGAPPEVMRPVVELEGNAAGDDDAQNADAAISPTHSPSHHRPCGAQRGTVDSSGSSNIDGGIPEQGTSGVESAAAVADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGATSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGATAALRXXVGASSLSASTPSADSTNNSADTRRVRVSPTPAVPVHQNATHGVDRAGVRILRGIGAGGASSMYDSPXXXXXXXXQQRFIPSVGRPKLKVWARWKYGRRVPTPPVPHAGDGGGRG 632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.737.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 0.00e+0 / Id = 94.79 Sequence D7FRN3_ECTSI
Match Name E-value Identity Description
D7FRN3_ECTSI 0.000e+0 94.79 Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 2310 Hectar predicted targeting category other localisation Exons 6 Ec32 ortholog description Ubiquitin-like Ec32 ortholog Ec-12_002410.1 Cds size 2310
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348724.8324108-CDS-Ecto-sp6_S_contig100:397924..398025 1682348724.8324108-CDS-Ecto-sp6_S_contig100:397924..398025 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 397925..398025 + 1682348724.8416302-CDS-Ecto-sp6_S_contig100:398301..398384 1682348724.8416302-CDS-Ecto-sp6_S_contig100:398301..398384 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 398302..398384 + 1682348724.8503397-CDS-Ecto-sp6_S_contig100:398852..398992 1682348724.8503397-CDS-Ecto-sp6_S_contig100:398852..398992 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 398853..398992 + 1682348724.8597345-CDS-Ecto-sp6_S_contig100:399258..399609 1682348724.8597345-CDS-Ecto-sp6_S_contig100:399258..399609 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 399259..399609 + 1682348724.8741248-CDS-Ecto-sp6_S_contig100:399847..400048 1682348724.8741248-CDS-Ecto-sp6_S_contig100:399847..400048 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 399848..400048 + 1682348724.8819597-CDS-Ecto-sp6_S_contig100:400288..401722 1682348724.8819597-CDS-Ecto-sp6_S_contig100:400288..401722 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 400289..401722 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.737.1
>prot_Ecto-sp6_S_contig100.737.1 ID=prot_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=770bp
MAGDGFVVIVALEPRPLPSLGLDERFTRIDYTATCTMLDVLEDMARVLRV back to top mRNA from alignment at Ecto-sp6_S_contig100:397925..401722+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.737.1 ID=mRNA_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:397925..401722+ (Ectocarpus species6 EcLAC_371)ATGGCAGGCGACGGATTTGTGGTGATCGTGGCATTGGAGCCTAGGCCACT
GCCAAGCCTTGGTCTCGACGAGCGCTTCACTCGGATCGACTATACAGCCA
C GTGAGCTAACTGCCCCCCGCTGCTTGTGATTGACCCTCGCATTCAATAA
CTGTGTCTACAGTACATATGTACATGTAGCCTCTTTTCATCTGTCATGTG
TCGGGGTCGCGTGAGCGGGACACACGAGCGGTGACAGTCCCTTAATTGTC
AATCGCAACTTCCATCGCGCGTGTACCTCTCTCTCTCTCTCTCTCTCTCT
CCTCGTCAATCACAACTCGTGCGGAAAATGCGGATGGTTCGGCACCACCG
CACCCACCCCCCTTATTGTTCTACCAGATGTACCATGCTCGATGTTCTCG
AGGATATGGCACGTGTGTTGAGAGTGCCGACAGGAGACCTAACTTTGCTG
GAGTCTGCAG GTGTGCATCGTAGTCTAGACTTGCATAGCTAAGTACCCTC
GTAGGACGGTATGTGAACAAGCTTCACAGTTAAGTGGTGTCGAATATTGT
GGCCCTCGACGCTACAGCAGTTGCGTAGGTTGGTTGAACGAAACTACTTG
ATGATGACGTTACTGTCGTCAAAAAATAATTGTCGTAAAACTACTGTACT
CTGTAGAACTATAGCAAGTAAAGCAGAAGAACAATACCTGAAGTGCGTCC
AGAGAATTTCGATTTATCGGAACAATACAACTGAGTTTTTCTGTTCGGCA
TCCCGTGTCAATACCATAGGTGCTCGTAGGCTTAACTTCCCGGCGGCCCT
GTTTCTTAGGTGCATGGAAATCTGTCCGCTATGTAGTAAGGGCGATTTGT
GACAAGCACCGACTTTCGTTCCGCAAGCATGCCGAATTACCAGCCTCTTT
TCTTTCGCGTTTCACTATCATCACGTAGGGCTGGAGGCTGTTGACCTAAC
GAACACACTGTCAGAGTACCACGGCCAGCATACTGCACCATGCTCTTCTG
TTTTCGCTGGAAAGCGCCACCAATGGCCTCGCTACGTCAAGCGGCAGCGG
AAGGAGATCAACTTGAAG GTATCCCGACCAGGGCGATAGGCGACAAAAAG
ATAGTCTACATTGAGCTTTTGTCGCCATGCCTGAAGTACATAGAGCGGGG
CACATTTCCTGAAAGGCGCACATGTCACAGAGGTCGAGGACGGACATATC
CAATACTTTCTCCGAGCACAGGTAGATATTTAGTTCTGTCAACCGCATGC
ATGAAACTTGCTCGGGTGGTTTATCATAGACTGTTACTAAAAATTGTTGC
GTGCTCCGACGTCGTTTTGTTATGATCACGGCAGGTGAAGCACACTCCGG
TACCGCATCAGCTGGTCACATGCACAGTGGAGGGGGGCAAAGGCCGTAAC
GTCCTTCGTCGGGCTATGGTTCGGCTGCCCAACACGGCAACGTTCGGGGA
GCTGCTCGCATGCGCTCGAGAAAAACGACATGGGGCCCTTGAGCTTGAAG
GCCCTGTGTACGGGCGCGATGGTGAACTAGACACCACATTGCGGGATGGT
TGGGTGCGGAATAGTTGCAAGGTTGATGGAACGCTGCACATAGGCCTTGC
GGTCGTCGTTTCGTTTCCTCGTGGAAGCCAGAGGTCGCTGTCTCTCACCA
TGGGGCCAGGCGCCACGATTGGTGACGTGAAACAG GTGAGATTGCCGCGA
CTTGCTTTCAACACCTCAAAGGACTTCCAGTATCTTAGACGAAAGGTGTT
TGTATCGATAGGGGATGCTCATGCGGCAGCCGTAAAGTACCTTCTGAGAC
ATACTGTGAAACCTTCGATATTTCGACAGGTCGTCCAAAGGCATGCACCA
AGAGTAAAGTCGACGCTCTGCTTGATTACCGCCCATCTCACCTGTCCGTT
GTCTCCCAAACTACGTTGCACAGAGGATATGTGTCGACCACGGCATTGTC
CCAAGCCGCCAAGGCTTGATGATCTGCGGAGGGGCGCAGCGACTAGGAGC
TAACGTTACCCTCAAGGAATGCTGCGTGTCGGGGGTTCCTGTGGGAGGGT
TTTCGCCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTCCACGTTGCGGAA
TGCACCACGCGAAACAGCCTTCAG GTAAGAGCCAGCGGTTGGTCACTCTC
GTCTTTGACGTTACGTTAACCTGCATGTGTTACAATGTCCCTCTTCGAGA
TTGAATAGACGCACAGAGCCCAGTACGACTGTAAATGCTTTTGGTAAACC
AGCGCGCCAATCGTGGACGTCTGCGAGACATGCTTTGCTCTCATCTTGCG
CTCGCAGCATCTTGAGGGGCGAACGACCCATTGACCGGTTCTTACTCCCC
CGGTATTAATGTAGCAGGTGGCAATGAGAGATTCAAGCCAAGGATGGTCC
GCCAGCGAGTTCAGAGGCGCCGTTGGCGTCGGTCTTCCATCTCGAGGCAC
CGATGTACTATGGTCCCCTTCGCAGCCCTCTCACCTCACGCCATCACCCC
CGGTGGCGGCCACCTACGTCCCACAAAACAACGAGGGTAGCTCCTTGACG
ACACCGTCATCTTTGCTCCGCAACGGCGCTAGCACGGTCGAGACCCGACC
CGCCGTCGTCGAGCACGGGAGCGGTCCTTACTCAACCGTCATGTTTGCTC
TGAGCCCCTCCGGCCGGGCGCTGACGCTGACCATGGCGCCCACCGCCACG
GTCCTGGACGCCAAGACACAAGTGGCCGCCTTCGAAGGGGTGTCCCCCTG
CCGGCAACGCCTCCTGTGGAGGGGGATCCTCATGGAGCCCGACGGCGCGC
TGCTGAGAAGGCTTGGAGCGCGGAGCGGCGACACGCTGATCGTGGGCTAC
CGCGTCGGCCCTGGAGCCCCACCCGAGGTGATGAGGGCGGTGGTCGAGCT
GGAAGGGAATGCCGCAGGTGACGACGACGCCCAAACCGCGGACGCGGCGA
TAAGCCCTACACATTCCCCGTCCCACCACCGACCGTGTGGAGCTCAACGG
GGGACCGTGGACAGCAGCGGCAGCAGCAACGTCGACGGGGGTATTCCAGA
TCAGGGGACCTCGGGCGTCGAATCTGCAGCGGTTGTAGCGGACGGAGACG
AAAACAACGACGTCGTAGCCCCGGACGGAGGTGGCGGTGACGGTGGTGGT
GGTGGCAGCGGCATGGACGTTGACGAGCCTGCGGGCGCCTGGGTCAACGT
CGTCAGAAATGGCGGGGTCGACGTTGTCGACGGGGCTCAAAGAGGCAGCG
GGAGCGGAGAAGCAGAACAAGACGGCAACGCAAGCGGCGCGATGTCTTCT
CCCCCGTCTGAAGCTCGGTCGGGAAGCGAAAAATCGGGAGGGCAGCGAGC
GTGGTGGGCAAAGAGGATGGCCACGCGGAGCTTGAAGGGAAGCCGGAGCT
CCAACGAGCAGGGCTGGGGTGCCACCGGCGCCGCTGCAGCTCTGCGTGGA
GCGGTGGGCGCATCGCCGTTGTCGGCATCCACCCCTTCTGCCGACTCTAC
CAACAACAGTGCGGACACGCGCCGTGTTCGTGTTTCCCCCGCGCCGGCGG
TACCCTTTCGCCAGAACGCCACCCACGGTGTCGACAGGGTGGGGTGGCGC
ATCCTCCGAGGCATTGGGGCTGGGGGTGCCAGTTCGGTGTATGATTCTCC
TCTTTCGAGTGCAGCGGCCAGGAGGCAGCAGCGATTCATACCGTCGGTCG
GGAGACCGAAGCTGAAAGTCTGGGCGCGTTGGAAGTATGGTCGCCGTGTG
CCCACACCCCCCGTTCCGCCTGCCGGTGATGGTGGTGGAAGGGGGTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:397925..401722+
>mRNA_Ecto-sp6_S_contig100.737.1 ID=mRNA_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2310bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:397925..401722+ (Ectocarpus species6 EcLAC_371) back to top