mRNA_Ecto-sp6_S_contig100.733.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.733.1 vs. uniprot
Match: D7FRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN6_ECTSI) HSP 1 Score: 268 bits (685), Expect = 1.780e-80 Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 1 Query: 2128 GKACTEDTFDVATARNGFSGIRSLQALGLSEEKGCSTPTARGRRCDAWAGNRGGDRGRASHRGAMHVVSAAVATAENGSSSEPRCMRGVHAFLNPGEAATRRAAGSKFLPEEDEKTRDWRDRTPERRPARPPAIKSPMYARRSRSEERNV 2577
GKACTEDTFDVATARNGFSGIRSLQALGLSEEKGCSTPT RGRRCDAWAGNRGGDRG+ASHR AMHVVSAAVATAENGSSSEPRCMRGVHAFLNPGEAATRRAAGSKFLPEEDEKTRDWRDRTPERRPARPPAIKSP+ +R ++R +
Sbjct: 2 GKACTEDTFDVATARNGFSGIRSLQALGLSEEKGCSTPTPRGRRCDAWAGNRGGDRGQASHRAAMHVVSAAVATAENGSSSEPRCMRGVHAFLNPGEAATRRAAGSKFLPEEDEKTRDWRDRTPERRPARPPAIKSPIGEKRVGQKDRTM 151 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.733.1 >prot_Ecto-sp6_S_contig100.733.1 ID=prot_Ecto-sp6_S_contig100.733.1|Name=mRNA_Ecto-sp6_S_contig100.733.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=903bp MSGLRGTRRRGDPPPRSAPVFLTAIEAQAVVNSETTALRALLLPDYDGVAback to top mRNA from alignment at Ecto-sp6_S_contig100:353646..360465+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.733.1 ID=mRNA_Ecto-sp6_S_contig100.733.1|Name=mRNA_Ecto-sp6_S_contig100.733.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6820bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:353646..360465+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:353646..360465+ >mRNA_Ecto-sp6_S_contig100.733.1 ID=mRNA_Ecto-sp6_S_contig100.733.1|Name=mRNA_Ecto-sp6_S_contig100.733.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2709bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:353646..360465+ (Ectocarpus species6 EcLAC_371)back to top |