mRNA_Ecto-sp6_S_contig100.732.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig100.732.1
Unique Name	mRNA_Ecto-sp6_S_contig100.732.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE)

HSP 1 Score: 443 bits (1139), Expect = 1.510e-140
Identity = 222/243 (91.36%), Postives = 228/243 (93.83%), Query Frame = 1

Query:   43 SSLLELAPGRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 771
            +SL       CP  R    +  +LKYQFYTSPEDTVVGS+ALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQA+LVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLR+LAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV
Sbjct:  353 ASLAVFIKSICPRSRNPTGR--KLKYQFYTSPEDTVVGSNALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRRLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 593

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: D7FRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN7_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 4.300e-132
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 1

Query:  166 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 771
            LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQA+LVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV
Sbjct:   41 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 242

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.700e-34
Identity = 90/236 (38.14%), Postives = 129/236 (54.66%), Query Frame = 1

Query:   19 AFVPSARVSSLLELAPGRC-PNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQ-QAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVV--TRDLRQLAVAVQAYPLGTPDGATTHLLLVME 714
            A +      +L+  + GRC P+ER       +++ Q+Y  PED +   D L C+W+++T+NA  CGALC+  + GMLRA +SP +++  LE+ FDVM  MQQLQRA G  + R+VPNTLA+A  P    A+ + +A PPY I H + AW  L G+ +EEA      L+ GPA           V   +G+ V+      + VV  T+     A  + AYPL T DG  TH L  + 
Sbjct:  229 AMIADVASLALMVESVGRCRPSER-------RVQVQYYAGPEDAITSGDMLSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASGLEDFRVVPNTLAMAQAPCDADARFITTAEPPYLIVHASPAWCRLCGYASEEAVGRTAALLQGPATDR------AAVARFMGA-VRARHCCSMEVVNYTKAGVPFANYIVAYPLST-DGRVTHYLATIS 449

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK)

HSP 1 Score: 142 bits (358), Expect = 3.270e-32
Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 1

Query:  106 DQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDN---------RIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGT-PDGATTHLLLVMEEI 720
            + +  ++Y + EDTVV   ALMC+W+++T NA +CG LC++++HGMLRA F   +         +++RL +VFDVMS MQQLQR  G+    +VPNT+A+A Q + +A+LV +A PPY + H N AW AL G   EE    P   ++G      G A   + +      ++RA        +R        V AYPL   P     H LLV  E+
Sbjct:  266 EDVALRYYVAKEDTVVVGRALMCRWMLRTVNAVQCGGLCELYNHGMLRAEFGEPSSDGPPGGGCKLRRLRLVFDVMSFMQQLQRCSGKACFHIVPNTVAMAKQGADEARLVCAAQPPYAVAHVNRAWQALFGQGLEEVYGRPLAFLDG---GGPGAAESVVARADDQFPLQRACSFLARANSRYRMAFPARVCAYPLAADPPRRPGHYLLVFHEV 477

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S1VFG1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFG1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.420e-23
Identity = 71/228 (31.14%), Postives = 120/228 (52.63%), Query Frame = 1

Query:   58 LAPGRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEI 720
            +AP    +     R L Q++  ++ + +D ++  D LMC ++ ++ +A  CGAL +V   GMLRAHFS  N++  LE+V+D M  MQQL+RA G +G  ++VP +L +A  P+  +A+++  A PP+ I   NE+WT +  +T  E +     ++NG      A   +G     L +   G   K A   ++    ++ R+      +YPL   +   TH+L V  E+
Sbjct:  152 IAPDAESSSSNSSRHLPQIRAYYHVNEDDMLLTDDILMCPFVFRSQDAVLCGALAEVIMPGMLRAHFSARNKLVSLEMVYDAMGFMQQLERASGSEGTAQIVPGSLEMALSPNTNEARVITLAKPPFLIVSVNESWTRMSKYTQMEVEGKELAILNGERTNPDAAVRSGKPPHKLEEVAAG---KCACSTNVHY-DKNGREFVDFTCSYPLTNANDTVTHILHVSREL 375

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S4I3L7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.050e-22
Identity = 68/229 (29.69%), Postives = 119/229 (51.97%), Query Frame = 1

Query:   67 GRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCT 732
            G   ++ + +    Q++  ++ + +D ++  D LMC ++ ++ +A +CGAL +    GMLR  FS  N++  +E+V+D M  MQQL+RA G +G  ++VPN+L +A  P+  +A+++  A PP+ I   NE+WT +  +T  E +    +++NG      A   N   +    +   G     +  V      RD       V +YPL   +   TH+L V +E+PV T
Sbjct:  123 GTSSSDSSPNSGRPQIRAYYHVNEDDMLLTEDVLMCPFVFRSQDAVQCGALAECVMPGMLRGQFSKRNKLLNVEMVYDAMGFMQQLERASGSEGAAQIVPNSLEMALSPNTDEARVITLAKPPFLIVSVNESWTRMTKYTQMEVEGKEMSILNGKRTDAQAGKRNSKPVHDFAEVS-GGRCACSANVHYDKHGRDFVDF---VCSYPLTNANDGITHILHVCKELPVPT 347

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S4I3G7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3G7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.420e-21
Identity = 68/229 (29.69%), Postives = 119/229 (51.97%), Query Frame = 1

Query:   67 GRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCT 732
            G   ++ + +    Q++  ++ + +D ++  D LMC ++ ++ +A +CGAL +    GMLR  FS  N++  +E+V+D M  MQQL+RA G +G  ++VPN+L +A  P+  +A+++  A PP+ I   NE+WT +  +T  E +    +++NG      A   N   +    +   G     +  V      RD       V +YPL   +   TH+L V +E+PV T
Sbjct:  720 GTSSSDSSPNSGRPQIRAYYHVNEDDMLLTEDVLMCPFVFRSQDAVQCGALAECVMPGMLRGQFSKRNKLLNVEMVYDAMGFMQQLERASGSEGAAQIVPNSLEMALSPNTDEARVITLAKPPFLIVSVNESWTRMTKYTQMEVEGKEMSILNGKRTDAQAGKRNSKPVHDFAEVS-GGRCACSANVHYDKHGRDFVDF---VCSYPLTNANDGITHILHVCKELPVPT 944

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S2UG65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG65_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.560e-20
Identity = 50/134 (37.31%), Postives = 86/134 (64.18%), Query Frame = 1

Query:  100 KLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAK 495
            ++ Q +  ++ + +D ++  D LMC ++ ++ +A  CGAL +    GMLRA FS  N+++ LE+V+D M  MQQL+RA G +GE ++VPN+L +A  P+ ++A+++  A  P+ I   NEAWT +  +T  E +
Sbjct:   19 QIVQTQAYYHINEDDIILTDDVLMCPYIFRSQDAVRCGALAECTMPGMLRATFSARNKLQNLEMVYDAMGFMQQLERAGGSEGECQIVPNSLEMALSPTTKEARVITQAKSPFLIVSVNEAWTRMTQYTQVEVE 152

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S1Z127_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z127_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.720e-20
Identity = 67/234 (28.63%), Postives = 126/234 (53.85%), Query Frame = 1

Query:   85 RTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRA-VGQGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYP 765
            ++ +++  Q++  ++ + +D ++  D LMC ++ ++ +A  CGAL +    GMLRAHFS  N++  LE+V+D M  MQQL+RA   +G  +++PN+L +A  P+  +A+++  A PPY I   NEAW     +T  E +    ++++G      A    G     +++   G+    A  V++    +  ++    V +YPL   +   TH+L + +E+P     P T  +++P
Sbjct:  212 QSSNQQFPQIQAYYHVNEDDMLLTDDVLMCPFIFRSQDAVLCGALAECIMPGMLRAHFSSRNKLCSLEMVYDSMGFMQQLERASCSEGTAQIIPNSLEMALSPNTNEARVITLAKPPYLIVSVNEAWARTTKYTQMEVEGKEMSVLHGKKTDPDAGKRPGKPSHEMMEVAKGNC---ACSVNIHY-DKHGKEFVDFVCSYPLTNGNDEITHILHICKELPE----PTTPENVFP 437

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BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A1Z5KBM7_FISSO (PAS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBM7_FISSO)

HSP 1 Score: 108 bits (270), Expect = 1.960e-20
Identity = 67/213 (31.46%), Postives = 114/213 (53.52%), Query Frame = 1

Query:  109 QLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPSQ-QAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPF-TLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIP 723
            Q++  F+ + +  ++  + LMC ++ ++ +A  CGAL D    GMLRA FS  N++  +EIV+D M  MQQL+RA G +G  +++P +L +A  P+Q +A+++  A PP+ I + NEAWT + G+T  E +   + +L+ G      A+   G     L +  +G       +       +D +     V +YPL       TH+L V +E+P
Sbjct:  508 QIRASFHVNEDFMILVDNVLMCPFVFRSQDAVLCGALADCLMPGMLRASFSSRNKLSSIEIVYDAMGFMQQLERASGNEGSAQIIPGSLEMALAPTQLEARVITLAEPPFKIVNVNEAWTRITGYTQMEVEGKEYISLLEGEGTVQEAKVRPGKPHHLLEEVAMGRPACSTNIH----YGKDGQDFIEFVCSYPLTNSYDQITHILHVSKELP 716

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KUH5_9PHAE	1.510e-140	91.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FRN7_ECTSI	4.300e-132	99.50	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CN81_9STRA	1.700e-34	38.14	BZIP domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A7S3UTR3_HETAK	3.270e-32	37.67	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A7S1VFG1_9STRA	1.420e-23	31.14	Hypothetical protein n=1 Tax=Grammatophora oceanic...	[more]
A0A7S4I3L7_9STRA	1.050e-22	29.69	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S4I3G7_9STRA	2.420e-21	29.69	Hypothetical protein n=1 Tax=Odontella aurita TaxI...	[more]
A0A7S2UG65_9STRA	1.560e-20	37.31	Hypothetical protein (Fragment) n=1 Tax=Attheya se...	[more]
A0A7S1Z127_9STRA	1.720e-20	28.63	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]
A0A1Z5KBM7_FISSO	1.960e-20	31.46	PAS domain-containing protein n=2 Tax=Fistulifera ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig100	contig	Ecto-sp6_S_contig100:346950..352240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	99.0
Seed ortholog evalue	2.7e-18
Seed eggNOG ortholog	35128.Thaps24507
Model size	3048
Hectar predicted targeting category	other localisation
Exons	5
EggNOG OGs	2EGGA@1,2SMEH@2759,2XADF@2836
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-12_002360.1
Cds size	606
Best tax level	Bacillariophyta
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.732.1	prot_Ecto-sp6_S_contig100.732.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig100 348093..349966 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348724.2637975-UTR-Ecto-sp6_S_contig100:346949..347114	1682348724.2637975-UTR-Ecto-sp6_S_contig100:346949..347114	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 346950..347114 +
1682348724.2730138-UTR-Ecto-sp6_S_contig100:348089..348092	1682348724.2730138-UTR-Ecto-sp6_S_contig100:348089..348092	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 348090..348092 +
1682348724.310043-UTR-Ecto-sp6_S_contig100:349966..352240	1682348724.310043-UTR-Ecto-sp6_S_contig100:349966..352240	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 349967..352240 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348724.2804298-CDS-Ecto-sp6_S_contig100:348092..348293	1682348724.2804298-CDS-Ecto-sp6_S_contig100:348092..348293	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 348093..348293 +
1682348724.288073-CDS-Ecto-sp6_S_contig100:348584..348734	1682348724.288073-CDS-Ecto-sp6_S_contig100:348584..348734	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 348585..348734 +
1682348724.295288-CDS-Ecto-sp6_S_contig100:348992..349221	1682348724.295288-CDS-Ecto-sp6_S_contig100:348992..349221	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 348993..349221 +
1682348724.3026211-CDS-Ecto-sp6_S_contig100:349940..349966	1682348724.3026211-CDS-Ecto-sp6_S_contig100:349940..349966	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 349941..349966 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:346950..352240+
coding sequence from alignment at Ecto-sp6_S_contig100:346950..352240+

protein sequence of mRNA_Ecto-sp6_S_contig100.732.1

>prot_Ecto-sp6_S_contig100.732.1 ID=prot_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=202bp
MCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQ
QLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTAL
MGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSV
VTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPF
V*

mRNA from alignment at Ecto-sp6_S_contig100:346950..352240+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.732.1 ID=mRNA_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5291bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:346950..352240+ (Ectocarpus species6 EcLAC_371)
GTGGCATGTGTCTCATGTGCGTTCGTGCCTTCGGCCCGGGTCTCTTCGCT
TCTCGAACTGGCGCCTGGCCGGTGCCCCAACGAACGAACCCATCACCGGA
AACTCGACCAGCTCAAGTATCAGTTCTACACGTCGCCGGAGGATACCGTG
GTCGGGTCAGACGCGGTAAGCAAGTTGAGAGAAGCAGGGGGCGCCGGCAA
CCGACAACGCAAGAAGAGCGTTTCTGAAAAGTTCCCCTGCATGAAATGGT
GCAATTTTCCTTGTGTGTGGGTGGTGATTGGGCGTTTCGGGGGGCTCGCG
TTGCAAGCGGTAGCGTCAGCGAGGGAGACCGTGGGGGCGAGAGGGGTCAA
CACCGAGTCAGCGTTGTGGCGTGCTCCTGTTTTGGAACATTAGGCTGCAT
GGTGCCAAGGGATTCGGCCGGACCTGTGCCGGTCACCCGGCACTACAATA
CTCCAGAGTATGGGACAAGTTATATATTTGGATCTGTTGTCACGCGATTT
CACTGTACCGGGTACTAGTTCAGAGTACCAGACAAGTTGGATATTTCATT
TAAAGTCACGTGAGGTCACCGGCGTTGTTCAGGGCGATTGGCCTTGGTCA
TTCGGCCTTGTGCAGAGAATAACCACCGCCACTGCTGTAGGGTAGTTTTT
TTTCTCTCATGAAACGGCGGCCAAGGGTTAGCGCCGGGGAGGGGGTCGCA
CCACGCTAGCGGCGTTCGATATGTCGTTTGCGCGGGACACGTTGTGTCGT
CGTGTTTGTTGCCACCGTTTCTTCCGCTGTTTTTGTGGATCCGATCCGTG
CCAGCGTTGGGGATCTATGGCCGGTCCGCCCGTCAAAAAAACGTTGTAGG
GCGGCTACTTGGGTGTATTTTGCGGTAGATACCGCTCAGCATTTGTAGCT
TCGGAAATCCACGCTTGCAATCTGTCGTCATCAGACGTTTGCTCTGACCA
AAACTCTCGCCTCAAACAGACCTACAGCACACGTCGTTCATCTAACGGAA
TAGAGTATTTTGCGGCCAGCAATGCGCACACCCCCGGTGCCGTGCTACTT
GTTCCTTCGGCACAAGCACCCCCCCTCCAACCCCTCCTTTTCGGTCTCGT
TTTCGCCCGCACCAACGGGGCCTCTCTCAATCGCAAACAGCTCATGTGCC
AGTGGCTGATGAAGACGGATAACGCCACCGAGTGCGGGGCGCTGTGCGAC
GTGTTCAGCCACGGGATGCTCCGAGCCCACTTCTCCCCGGACAACCGCAT
AAAGCGCCTGGAGATAGTCTTCGACGTCATGAGCCTGATGCAGCAGCTGC
AGCGGGCGGTAGGCCAGGGGGAGCTGCGGATGGTACCGAACACGGTGAGG
AGGGGAGGGGTCATGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTGCC
GCTGCGCGTTATGTAGATGGGGCGTAAGAACGGTGTTGGTTTTGGTACGC
AGCCACAAACCCGAATCGAATCGAAACGTGCTGTGCTGTGTTTGCGTTGG
TTGGGTCTATCTGTCTGTCGGCCTGTCGGCCTGTCGGTCTGTCTGTTTGT
CTGTCTGTCTAACCTCTCTCTGTGCCTCTCTCGCTCGCATTCCCTCCCCG
TCAACGTCTCTCTCTCGATCTCTCCCCTCCCCCAGCTGGCGTTGGCGACC
CAGCCGTCGCAGCAAGCGCAGCTGGTGCTTTCGGCCGTGCCGCCGTACGG
GATCACGCACACCAACGAGGCGTGGACGGCGTTGATGGGGCACACCGCCG
AGGAGGCCAAGATGTTCCCCTTCACCCTCATGAACGTGAGAGATACGCCG
CTTCTTGGTGTTCCCCCTCAACCCTTATGAACGTAGGAGATACGCCGCTT
CTTGCTGCCTGCTTGCTGCCTGCTTACTGCCGGCTGCATAGAGCGTACCA
AAGAAAGGTTGGACGTCTAGTTAGATTCCTGCCTGTCGTTTGTTTTTCAA
GACGCGAGGGGAAACTGGCATCTCTGTGTCCATCTGCTGCGAAAATACTC
GGGCAGGAAACGAAACCGTCCCCCTGTGATTTGTGCCTCGCAGGGTCCCG
CCGAGGCAAACAACGGGGACGCCCTGGAGACGCTCGTGCAGACCTGCATA
GGGTCGAACGTCAAGAGGGCGGAGATGGTGGACCTTAGCGTCGTTACGAG
AGACTTGAGGCAATTGGCTGTGGCCGTCCAGGCCTACCCCTTGGGAACTC
CGGATGGCGCGACCACCCACCTGCTGCTCGTCATGGAAGAAATCCCGGTC
TGCACGCCGTTGCCACAAACAGGTGCGTAAAGAACGTCTTATTTACTACT
GAGTATGATCTTACGGTTTTTATTTTACAAACATGCAGAGGACCCCTGGG
TTCGAATAGAGCGGGGGGCACCCGGCTGAGAATGGACAGGAGGAGTTGTC
GTTTTTTTCTCGCTCGAGGTACAGACGGGTGGGAGCTCTCGTAATGTCGG
ATTAGGCAAGCTGCAAGGTGCCATTAGTAGGACGGGTAGCGTGGCAGAGA
TTAGAAGGTTAGCGGGCGGTGATGTTCGGGGCAGGTCCCGGGCCGGGCCG
GGACGGTACAAAAACTTGAGGTCCCCGGAATACCGCGTATTTCTCCTCCT
GGCGCGGAATGCAAAATTTGTGCTTGCCTGCTTTGCCTTGCGGCTAGATC
AGCTTGCTGCTGTTACAATATACTGAGTATAGCAATTGTTTTTGGTACGT
GGGTCGCGCTTGTTTTCTCCGGGGTAGTAGCCTTTCCCACCAACAGCAGC
GGCACTCGACTGCCCAACCAGACGCGTTGCGTGGAGGTGGTCATTAGCCT
CTTGCCGATCCTGGCCCGAAAATCTTCACCTTTACAGTAAGCAAGCAGCC
TTGTCACCGTCCGCCTTCGCGGCATTCTCGCCCGCTGATTGGCCGATCAC
TCGTAACCCTTTGCGCCCGCCTCTCGGATCGGATCGGTTCGAATGTGAAT
CGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACAGGCCTGGATC
TCTATCCGTTCGTCTGAGAGAGGAAACGCCAATAGGGAGGGAACGGCAGT
TTCACCGCGTAGAGGCGTCAACGCTCACCTGATGCTGCACCGCTGATGCG
TCTGATGCCTTCAGAGAGGTGCTGTTTGGATTGTGCCGAGGCTATTGTAT
CTTGTTAAGGTCTCGGGGTTACCTCGACATGTGTTGCTGCGTTTCTCCCC
TTTAGTGGGCGGGATGGGTGTCATGTAGTGTGATCGAATCGGCAGGTCAG
AGTTCAGAAAGAGTGAAAGAGAAGGAACCCCGGGATCACACCGATGTATC
TTTCTGGGTTCAGTGTGTTGTTGTCGTTGGGTAGTGTTTTGTTTTCAAGT
TCACTTATTGTTTGTAAGCTTTCCATTCGTCCTAGTTTAGCGTGTTTGAG
CGCACAGATAGATTCAACCTATTTACATTTTTGTGGCGCCGTTGGCTCCC
CGCGCTTGCGGTTCTTCGTAAGCTGAGGAGCTGGATGCCGGGGTCACGAT
GCGATGTATGCCTTCTCATCCTATGGTACTATAGGTACGCAACGACCTCC
GCTTCGGCAGGACTCCATAGCCCTCAGAAGGTCGAATGAAGGTCTTGGGG
TATACCGACTGAAGCTGCCGGTTGCCGGCGGTGGTCTTGAATAGCTACCG
CGTCCATTTCGAGGCGCATTTATTTAAGTAGAGGAGTATTTGTACGAGCA
CCGCCTCTGGGATGTTGTACAAGGGCGTTTTGTTTTTTTTTGCGGTCGTC
GGTGAGGTGATTGGAAGACGTGCAAAGTACGAATACGAGTAACAAGGAAA
ATCGGTCACTGCCGTTTGCCCAGGCGCTCACGCCAGGGATGCGTGCTGTG
TAGACACGCTTGCTACCTGGTGTTTTTTGTGGCTGTGCGACGGGGCGGGT
AGCGAATGAAACGATTGCTTTATTTAGGCTATGGACAAGCAGCTGTGGTT
GTGGGCTTCAGAGTATTTTGGGGCGAACAGTATGAAACGCGAACCGTTTC
TATTGTTCACACGGACAGGCGAGGATGTTGAGTGTTGTGGTCAATTCGGC
CTCATGGCAATTTGTAGGTGCTTAAACGCAAGTTACACATGATTTATGCG
CTTACCTCATCAGTGCTCTCAGTTTGAAGAATCACGTTGCTTCGTTGGCA
CAAAAAAATCGCATCACACTAAAGGTAATTTTTTTAAAAGGGGGGAGGTG
TTGTTCTTCTTGAGAGAATCAAAGTGGGCTATGTGGTGGTGCCCTGGAAA
AGGCCCCCAGGTACACGACGGTAAATATGCAGGCTCTGACCTCAATCGGT
TAGTTTTCTGGAGTATTGAGAGGAGAGAGCGTCACCTGAGCGCAGAACTG
CTTTCAATCATAATGTGAGGCGTCGTTAACGTGCGTTGTCGGGGACTATC
GGGAGATGAGTAGCGCACTGGGCATGCCAGCGGATAAACAGCCAATGATT
GTGGTGCAGCTGAGATCGCATCCAGTGGGAGGTTGGCAAGTTCTGGTGGA
ATTCAGAAGGGCGTATGGAAGCAAGCGTGTCTAGCTCCAGGTGCTTTGAG
AGTGACGTGTAGAGAGACAGGGATTTGAAGGGGCGCTGTTTCCTGATTTG
GTGGAGAGGTTATTCGGTCGAGAAAGCCGCGTCTTGGCCGAAAATCCTTG
GATGACGACTTTTTTTTTTTTTGTGACAGCTATTTAGTGGCCCAGTTTAC
ATTCAGATGGATCGTTGACTGTCGCTTCTGCTGTGTATGTGGACGTACGA
ACGTGTTTGGGAGGGGGGGTGCGTGGACCTCGATGTTTTCATTTTTTTTA
CGGAAAGATGATGCTCATGTGCATATTTGCTTGGAACATGGGCTTTGAGC
ATAACGTTTAGCACTAAACTCAGTGTCCCATGCGTAGAGACCGCTGTAGA
ATAGCATGAAGAAGACTTCACCTAGTTGAAAACGTGTACATGGGAAGTAT
TCGGCCGGCCGGAATGGATGACGTTGACACTCGCGAACATAATTGTTTTA
TCTTGTCTCTGCGACGGCTTGTCGGTTTATAAATCGTGTCCCTGTGTGAA
AAGAGGGAATCTTCTTCGACAGGTGTTGGGGGGATTGGGCCTTTTTAAGG
TCACCCCCAATTTGTTACTCTCCGCTCTTCAAGGGGTTCGACTATTCTCG
TTTCTCGAAGGCAGGGGTGTATAATAACCGGAACCCGACCGGCTAATAGC
GTCGAGTAGAGGAGCGTTTTTCTCTTGTCGCTGCGATGGTATCCCTGTGT
GAAAAGAGGAATCGTCTTCGACAGATGTAAGGGGGATTGGT

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:346950..352240+

>mRNA_Ecto-sp6_S_contig100.732.1 ID=mRNA_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:346950..352240+ (Ectocarpus species6 EcLAC_371)
ATGTGCCAGTGGCTGATGAAGACGGATAACGCCACCGAGTGCGGGGCGCT
GTGCGACGTGTTCAGCCACGGGATGCTCCGAGCCCACTTCTCCCCGGACA
ACCGCATAAAGCGCCTGGAGATAGTCTTCGACGTCATGAGCCTGATGCAG
CAGCTGCAGCGGGCGGTAGGCCAGGGGGAGCTGCGGATGGTACCGAACAC
GCTGGCGTTGGCGACCCAGCCGTCGCAGCAAGCGCAGCTGGTGCTTTCGG
CCGTGCCGCCGTACGGGATCACGCACACCAACGAGGCGTGGACGGCGTTG
ATGGGGCACACCGCCGAGGAGGCCAAGATGTTCCCCTTCACCCTCATGAA
CGGTCCCGCCGAGGCAAACAACGGGGACGCCCTGGAGACGCTCGTGCAGA
CCTGCATAGGGTCGAACGTCAAGAGGGCGGAGATGGTGGACCTTAGCGTC
GTTACGAGAGACTTGAGGCAATTGGCTGTGGCCGTCCAGGCCTACCCCTT
GGGAACTCCGGATGGCGCGACCACCCACCTGCTGCTCGTCATGGAAGAAA
TCCCGGTCTGCACGCCGTTGCCACAAACAGGCCTGGATCTCTATCCGTTC
GTCTGA