mRNA_Ecto-sp6_S_contig100.732.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A6H5KUH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH5_9PHAE) HSP 1 Score: 443 bits (1139), Expect = 1.510e-140 Identity = 222/243 (91.36%), Postives = 228/243 (93.83%), Query Frame = 1 Query: 43 SSLLELAPGRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 771
+SL CP R + +LKYQFYTSPEDTVVGS+ALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQA+LVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLR+LAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV
Sbjct: 353 ASLAVFIKSICPRSRNPTGR--KLKYQFYTSPEDTVVGSNALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRRLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 593
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: D7FRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN7_ECTSI) HSP 1 Score: 407 bits (1047), Expect = 4.300e-132 Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 1 Query: 166 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 771
LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQA+LVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV
Sbjct: 41 LMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQARLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYPFV 242
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A836CN81_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN81_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.700e-34 Identity = 90/236 (38.14%), Postives = 129/236 (54.66%), Query Frame = 1 Query: 19 AFVPSARVSSLLELAPGRC-PNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQ-QAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVV--TRDLRQLAVAVQAYPLGTPDGATTHLLLVME 714
A + +L+ + GRC P+ER +++ Q+Y PED + D L C+W+++T+NA CGALC+ + GMLRA +SP +++ LE+ FDVM MQQLQRA G + R+VPNTLA+A P A+ + +A PPY I H + AW L G+ +EEA L+ GPA V +G+ V+ + VV T+ A + AYPL T DG TH L +
Sbjct: 229 AMIADVASLALMVESVGRCRPSER-------RVQVQYYAGPEDAITSGDMLSCRWMLRTENAAACGALCECHAQGMLRARYSPSHKLAHLELAFDVMGFMQQLQRASGLEDFRVVPNTLAMAQAPCDADARFITTAEPPYLIVHASPAWCRLCGYASEEAVGRTAALLQGPATDR------AAVARFMGA-VRARHCCSMEVVNYTKAGVPFANYIVAYPLST-DGRVTHYLATIS 449
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S3UTR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTR3_HETAK) HSP 1 Score: 142 bits (358), Expect = 3.270e-32 Identity = 81/215 (37.67%), Postives = 117/215 (54.42%), Query Frame = 1 Query: 106 DQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDN---------RIKRLEIVFDVMSLMQQLQRAVGQGELRMVPNTLALATQPSQQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGPAEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGT-PDGATTHLLLVMEEI 720
+ + ++Y + EDTVV ALMC+W+++T NA +CG LC++++HGMLRA F + +++RL +VFDVMS MQQLQR G+ +VPNT+A+A Q + +A+LV +A PPY + H N AW AL G EE P ++G G A + + ++RA +R V AYPL P H LLV E+
Sbjct: 266 EDVALRYYVAKEDTVVVGRALMCRWMLRTVNAVQCGGLCELYNHGMLRAEFGEPSSDGPPGGGCKLRRLRLVFDVMSFMQQLQRCSGKACFHIVPNTVAMAKQGADEARLVCAAQPPYAVAHVNRAWQALFGQGLEEVYGRPLAFLDG---GGPGAAESVVARADDQFPLQRACSFLARANSRYRMAFPARVCAYPLAADPPRRPGHYLLVFHEV 477
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S1VFG1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFG1_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.420e-23 Identity = 71/228 (31.14%), Postives = 120/228 (52.63%), Query Frame = 1 Query: 58 LAPGRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEI 720
+AP + R L Q++ ++ + +D ++ D LMC ++ ++ +A CGAL +V GMLRAHFS N++ LE+V+D M MQQL+RA G +G ++VP +L +A P+ +A+++ A PP+ I NE+WT + +T E + ++NG A +G L + G K A ++ ++ R+ +YPL + TH+L V E+
Sbjct: 152 IAPDAESSSSNSSRHLPQIRAYYHVNEDDMLLTDDILMCPFVFRSQDAVLCGALAEVIMPGMLRAHFSARNKLVSLEMVYDAMGFMQQLERASGSEGTAQIVPGSLEMALSPNTNEARVITLAKPPFLIVSVNESWTRMSKYTQMEVEGKELAILNGERTNPDAAVRSGKPPHKLEEVAAG---KCACSTNVHY-DKNGREFVDFTCSYPLTNANDTVTHILHVSREL 375
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S4I3L7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L7_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.050e-22 Identity = 68/229 (29.69%), Postives = 119/229 (51.97%), Query Frame = 1 Query: 67 GRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCT 732
G ++ + + Q++ ++ + +D ++ D LMC ++ ++ +A +CGAL + GMLR FS N++ +E+V+D M MQQL+RA G +G ++VPN+L +A P+ +A+++ A PP+ I NE+WT + +T E + +++NG A N + + G + V RD V +YPL + TH+L V +E+PV T
Sbjct: 123 GTSSSDSSPNSGRPQIRAYYHVNEDDMLLTEDVLMCPFVFRSQDAVQCGALAECVMPGMLRGQFSKRNKLLNVEMVYDAMGFMQQLERASGSEGAAQIVPNSLEMALSPNTDEARVITLAKPPFLIVSVNESWTRMTKYTQMEVEGKEMSILNGKRTDAQAGKRNSKPVHDFAEVS-GGRCACSANVHYDKHGRDFVDF---VCSYPLTNANDGITHILHVCKELPVPT 347
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S4I3G7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3G7_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.420e-21 Identity = 68/229 (29.69%), Postives = 119/229 (51.97%), Query Frame = 1 Query: 67 GRCPNERTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCT 732
G ++ + + Q++ ++ + +D ++ D LMC ++ ++ +A +CGAL + GMLR FS N++ +E+V+D M MQQL+RA G +G ++VPN+L +A P+ +A+++ A PP+ I NE+WT + +T E + +++NG A N + + G + V RD V +YPL + TH+L V +E+PV T
Sbjct: 720 GTSSSDSSPNSGRPQIRAYYHVNEDDMLLTEDVLMCPFVFRSQDAVQCGALAECVMPGMLRGQFSKRNKLLNVEMVYDAMGFMQQLERASGSEGAAQIVPNSLEMALSPNTDEARVITLAKPPFLIVSVNESWTRMTKYTQMEVEGKEMSILNGKRTDAQAGKRNSKPVHDFAEVS-GGRCACSANVHYDKHGRDFVDF---VCSYPLTNANDGITHILHVCKELPVPT 944
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S2UG65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UG65_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.560e-20 Identity = 50/134 (37.31%), Postives = 86/134 (64.18%), Query Frame = 1 Query: 100 KLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAK 495
++ Q + ++ + +D ++ D LMC ++ ++ +A CGAL + GMLRA FS N+++ LE+V+D M MQQL+RA G +GE ++VPN+L +A P+ ++A+++ A P+ I NEAWT + +T E +
Sbjct: 19 QIVQTQAYYHINEDDIILTDDVLMCPYIFRSQDAVRCGALAECTMPGMLRATFSARNKLQNLEMVYDAMGFMQQLERAGGSEGECQIVPNSLEMALSPTTKEARVITQAKSPFLIVSVNEAWTRMTQYTQVEVE 152
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A7S1Z127_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z127_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.720e-20 Identity = 67/234 (28.63%), Postives = 126/234 (53.85%), Query Frame = 1 Query: 85 RTHHRKLDQLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRA-VGQGELRMVPNTLALATQPS-QQAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPFTLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIPVCTPLPQTGLDLYP 765
++ +++ Q++ ++ + +D ++ D LMC ++ ++ +A CGAL + GMLRAHFS N++ LE+V+D M MQQL+RA +G +++PN+L +A P+ +A+++ A PPY I NEAW +T E + ++++G A G +++ G+ A V++ + ++ V +YPL + TH+L + +E+P P T +++P
Sbjct: 212 QSSNQQFPQIQAYYHVNEDDMLLTDDVLMCPFIFRSQDAVLCGALAECIMPGMLRAHFSSRNKLCSLEMVYDSMGFMQQLERASCSEGTAQIIPNSLEMALSPNTNEARVITLAKPPYLIVSVNEAWARTTKYTQMEVEGKEMSVLHGKKTDPDAGKRPGKPSHEMMEVAKGNC---ACSVNIHY-DKHGKEFVDFVCSYPLTNGNDEITHILHICKELPE----PTTPENVFP 437
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Match: A0A1Z5KBM7_FISSO (PAS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBM7_FISSO) HSP 1 Score: 108 bits (270), Expect = 1.960e-20 Identity = 67/213 (31.46%), Postives = 114/213 (53.52%), Query Frame = 1 Query: 109 QLKYQFYTSPEDTVVGSDALMCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQQLQRAVG-QGELRMVPNTLALATQPSQ-QAQLVLSAVPPYGITHTNEAWTALMGHTAEEAKMFPF-TLMNGP-----AEANNGDALETLVQTCIGSNVKRAEMVDLSVVTRDLRQLAVAVQAYPLGTPDGATTHLLLVMEEIP 723
Q++ F+ + + ++ + LMC ++ ++ +A CGAL D GMLRA FS N++ +EIV+D M MQQL+RA G +G +++P +L +A P+Q +A+++ A PP+ I + NEAWT + G+T E + + +L+ G A+ G L + +G + +D + V +YPL TH+L V +E+P
Sbjct: 508 QIRASFHVNEDFMILVDNVLMCPFVFRSQDAVLCGALADCLMPGMLRASFSSRNKLSSIEIVYDAMGFMQQLERASGNEGSAQIIPGSLEMALAPTQLEARVITLAEPPFKIVNVNEAWTRITGYTQMEVEGKEYISLLEGEGTVQEAKVRPGKPHHLLEEVAMGRPACSTNIH----YGKDGQDFIEFVCSYPLTNSYDQITHILHVSKELP 716 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.732.1 >prot_Ecto-sp6_S_contig100.732.1 ID=prot_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=202bp MCQWLMKTDNATECGALCDVFSHGMLRAHFSPDNRIKRLEIVFDVMSLMQback to top mRNA from alignment at Ecto-sp6_S_contig100:346950..352240+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.732.1 ID=mRNA_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5291bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:346950..352240+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:346950..352240+ >mRNA_Ecto-sp6_S_contig100.732.1 ID=mRNA_Ecto-sp6_S_contig100.732.1|Name=mRNA_Ecto-sp6_S_contig100.732.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=606bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:346950..352240+ (Ectocarpus species6 EcLAC_371)back to top |