mRNA_Ecto-sp6_S_contig100.729.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: D7FKE7_ECTSI (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.130e-163
Identity = 288/318 (90.57%), Postives = 288/318 (90.57%), Query Frame = 1

Query:   22 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXXNAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ--HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXPTRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 969
            GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTG PPRGAFHDATAGGXXXXXXNAFRNGGXX GG GQTPAAAQPSPFARGPMNDSFSAAGGG    XXXXX  YSNP QTAQQQQ  HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXX PTRSLA     VRDG     XXXXXXXXXXXXXXXXXXXVDRM    GIG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT
Sbjct:    7 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSAAGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLADDPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXVDRMXXXXGIGSFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 324

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.370e-122
Identity = 259/311 (83.28%), Postives = 266/311 (85.53%), Query Frame = 1

Query:   22 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAFHDATAGGXXXXXX-NAFRNGGXXAGGYGQTPAAAQPSPFARGPMNDSFSAAGGGSAPGXXXXXGGYSNPVQTAQQQQ-HGFGARVGFSSEVALVPVEASGNSRGRNVMDXXXXXXXP-TRSLAXXXXXVRDGXXXXXXXXXXXXXXXXXXXXXXXXVDRMGGGDGIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDE 945
            GDVGYGTQQQGYQTRSR RGRDGPPEGQVVEGDLFGNPKRQ+FRSTDPPTGVPPRGA+ DATAGGXXXXXX NAFR+  XX     QTPA+AQPSPFARGPMN S S A       XXXXX GYS+P QTAQQQQ HGFGARVGFSS+VA VPVEASGNSRG+NVMDXXXXXXX  TRSL XXXXX    XXXXXXXXXXXXXXXXXXXXXXXX    GG      FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRG P SNWLY KYATRLQAEKALAAGHGSRLTDTVMLGVQRV DDE
Sbjct:    7 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGPMNASSSVAXXXXXXXXXXXXXGYSDPGQTAQQQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGG------FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: E9HKL2_DAPPU (Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU)

HSP 1 Score: 66.6 bits (161), Expect = 1.410e-9
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1

Query:  706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 948
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+++GV    D  +
Sbjct:    4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGVVPCTDGSI 83

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A0P5DW53_9CRUS (Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 4.380e-9
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1

Query:  706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 948
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+M+GV    D  +
Sbjct:  136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGVVPCTDGAI 215

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: B7PS80_IXOSC (Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC)

HSP 1 Score: 60.8 bits (146), Expect = 2.630e-7
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 1

Query:  721 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 927
            TWV V+G PP  ++ ++ +F  +G+++E R +P+SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:   75 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 142

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: UPI001C383A88 (nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C383A88)

HSP 1 Score: 60.8 bits (146), Expect = 5.780e-7
Identity = 26/69 (37.68%), Postives = 47/69 (68.12%), Query Frame = 1

Query:  721 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 927
            TWV V+G PP  ++ ++ +F  +G+++E R +P+SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:  147 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 214

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1V9Z8L5_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.840e-6
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1

Query:  724 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 954
            W+ V+G        +L  F   GD V+ R     NWLY +Y TRLQAEKALA   GS L+ +VM+GV+R    E+ A
Sbjct:  128 WITVFGFSAVDMETILRHFQSMGDAVQYR-YGRGNWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEMDA 202

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A7R9UFC1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.630e-6
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1

Query:  706 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQ-RGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGV 924
            D +   WVVV+G  P +S  VL  F +FGD+VE  RG    NWL+ +Y +R+QA+KA+A  +G+ L  T+M+ V
Sbjct:  180 DIRWQDWVVVFGFQPEQSTSVLRYFQRFGDIVEHHRG--KGNWLFIRYRSRMQAQKAVAQ-NGATLDPTLMVAV 250

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A836CNV8_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.400e-6
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1

Query:  718 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTD-TVMLGVQRV 933
            A WV+V+G+P G   +V+  F  +G VVE R +   NW+  +YAT LQA KALA+G+ +R++   +M+G   +
Sbjct:   86 ARWVMVYGMPAGCVAEVVDHFRVYGQVVENR-VGQGNWVLLRYATVLQARKALASGNHARISGGRIMVGTSAI 157

[Close]

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Match: A0A1W0ACE0_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACE0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-5
Identity = 33/77 (42.86%), Postives = 43/77 (55.84%), Query Frame = 1

Query:  724 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGLPDSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHA 954
            WV V+G        +L  F   GDV + R     NWLY +Y TRLQAEKAL+   G+ L  +VM+GV+R    E+ A
Sbjct:  123 WVTVFGFAAVDMEAILKHFQSMGDVTQYR-YGRGNWLYVRYRTRLQAEKALSES-GATLAGSVMIGVKRCLVSEMDA 197

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FKE7_ECTSI	1.130e-163	90.57	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KSX2_9PHAE	1.370e-122	83.28	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
E9HKL2_DAPPU	1.410e-9	40.74	Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID...	[more]
A0A0P5DW53_9CRUS	4.380e-9	41.98	Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=3552...	[more]
B7PS80_IXOSC	2.630e-7	37.68	Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=...	[more]
UPI001C383A88	5.780e-7	37.68	nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapul...	[more]
A0A1V9Z8L5_9STRA	2.840e-6	44.16	RRM Nup35-type domain-containing protein n=1 Tax=A...	[more]
A0A7R9UFC1_9STRA	6.630e-6	44.59	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A836CNV8_9STRA	7.400e-6	41.10	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]
A0A1W0ACE0_9STRA	1.630e-5	42.86	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Stop	1
Start	1
Seed ortholog score	68.6
Seed ortholog evalue	6.3e-09
Seed eggNOG ortholog	6669.EFX65288
Model size	972
KEGG ko	ko:K14313
KEGG TC	1.I.1
KEGG Pathway	ko03013,map03013
KEGG Module	M00427
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005198,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006355,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0008104,GO:0008150,GO:0008289,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0097159,GO:1901363,GO:1903506,GO:2000112,GO:2001141
Exons	4
EggNOG free text desc.	Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs)
EggNOG OGs	38DK6@33154,3B9SE@33208,3CWD6@33213,420BH@6656,KOG4285@1,KOG4285@2759
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-12_002340.1
Cds size	972
COG Functional cat.	D
Best tax level	Arthropoda
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko03019