mRNA_Ecto-sp6_S_contig100.728.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 835 bits (2157), Expect = 3.690e-300
Identity = 511/591 (86.46%), Postives = 531/591 (89.85%), Query Frame = 1

Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKK-QXXXXXXXXXXXXXXXXXXGGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEALRGKNTVAEPGPAAVVTSPPSTLAVESEETAGALDEEQASPERTIREDEAMEDAGSGASCANTAAAVVADDANDPAPVSAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAXXXXGA--NGITGGAKLDDAVLGGGDXXXXAPEPVAANGDEEGASFSSPAKCK---AAASGLPLSPLGSLFAGTDVSAEGGLAVARKPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGS EDSGMERTDAAGANNG+EPG DSTGVAAPEE TTAKKVSNRPPAFSENHLVKEKGLWQ+YKDFPQKC+Y GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GRARTRSL+RELRDTERDRVLEAK+GREAVDDVH+QEAARLAAKESKTAAAEGDRAEEREDEE AGSRY MEVDGDGGDEGKSDRQVAAEGSAAAMS+QVRQRIEANRRLALDRLR KK +    XXXXXXXXXXXXXX       AANDGSREVEDLEEDLMDVDGGGGPGD FDDDEAALADME E+MAARPVAAEA R KNTVAEPGPA V TSP STLAVES+ETAGA+DEE A PE +IREDEAMED GS AS ANTAAAVVADDA DPAPVSAAADGVARGGARAAGAGCAG+VDEA A  A  AA GGEP  TAGEESGGELPPASEPG P PGVGGG++RDGANDEAASL T  AXXXX    +GITGGAK+DDAVL    XXXXAPEPVAA GDEEGASFSSPAKC+   AAASGLPLSPLG+LFAGTDVSAEGGLAV R+PLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDGGDEGKSDRQVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDGGGGPGDGFDDDEAALADMETEQMAARPVAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAAAVVADDAKDPAPVSAAADGVARGGARAAGAGCAGNVDEAPATWAADAAGGGEPDATAGEESGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXXXXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDENV 591

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 767 bits (1980), Expect = 2.670e-274
Identity = 480/589 (81.49%), Postives = 483/589 (82.00%), Query Frame = 1

Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQXXXXXXXXXXXXXXXXXXGGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEALRGKNTVAEPGPAAVVTSPPSTLAVESEETAGALDEEQASPERTIREDEAMEDAGSGASCANTAAAVVADDANDPAPVSAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAXXXXGANGITGGAKLDDAVLGGGDXXXXAPEPVAANGDEEGASFSSPAKCKAA----ASGLPLSPLGSLFAGTDVSAEGGLAVARKPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQY GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDR EEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAA MSDQVRQRIEANRRLALDRLRLKKQ XXXXXXXXXXXXXXXXX         NDGSREVED EEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEA RGKNTVAEPGPAAVVTSPPSTLAVE                                                              GARAAGAGCAGSVDEASAKCAVAAAR GEPGTTAGEESGGELPPASEP APAPGVGGGRERDGANDEAASLGTTAA    GA+GITGGAKLDDAVLG   XXXX             ASFSSPAKC+      ASGLPLSPLGSLFAGTDVSAEGGLAVAR+PLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXXXXXXX---XXXXXXNDGSREVEDPEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTVAEPGPAAVVTSPPSTLAVER-------------------------------------------------------------GARAAGAGCAGSVDEASAKCAVAAARSGEPGTTAGEESGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXXXXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 525

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.120e-22
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 1

Query:  148 EEATTAKK-VSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            EE   AKK    R P FSE  LV+ KGL +I  DFP++ +   +G+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ R R  L  +RD ERDR + A++G++AV+
Sbjct:   52 EEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A397E7Y0_9STRA (Swi3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.780e-13
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  +Y  FP    +N     G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFP--THFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A397BHD7_9STRA (Swi3 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHD7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-13
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  +Y  FP    +N     G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFP--THFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A482SX14_9ARCH (Swi3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX14_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 5.790e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1

Query:  166 KKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KK  N  P F E  LV   GL +IY +FP + +Y  + +E +FLR L+  YKEW +QL+PG++FED   +   L  ++R RS + ELRD ER R
Sbjct:   59 KKAKNAKP-FDEALLVGPHGLSRIYHEFPLRIRYQ-KNQEVQFLRQLLSLYKEWAFQLHPGLSFEDAILKISTLSHKSRVRSAVTELRDLERIR 150

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.530e-13
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 1

Query:  154 ATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            A++      R     E+HL+  +G  ++Y+ FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + L+ E+R+ ER + +E + G++  D
Sbjct:   39 ASSTPSKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6A3STA2_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.750e-13
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 1

Query:  172 VSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLE 456
            V  R     E+HLV  +GL ++++ FP +   +  GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:    7 VQRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6G0QIQ9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QIQ9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.390e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1

Query:   88 AAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLE 456
            AAGA  GS+   D    AA     T +    R     E+HLV  +GL ++++ FP +   +  GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:   22 AAGATAGSQDAVDDLVTAAAASVPTKR----RRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 140

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A3R6ZL68_9STRA (Swi3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZL68_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.490e-12
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            K   +   FSE HL+  KG   +Y  FP    +NG    G E+E LR L+ AYKEW Y+LYPG+ FEDL  RTE +  +A   S L +LR  ER R
Sbjct:   49 KAKKKRATFSEQHLLGPKGFSLVYSSFP--THFNGAVTNGNESEALRELITAYKEWAYELYPGLNFEDLVDRTEIIAKKATVSSYLSDLRQQERKR 142

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5L0P4_9PHAE	3.690e-300	86.46	Swi3 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FKE8_ECTSI	2.670e-274	81.49	Swi3 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A836CM34_9STRA	2.120e-22	53.10	Swi3 domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A397E7Y0_9STRA	1.780e-13	44.79	Swi3 domain-containing protein (Fragment) n=1 Tax=...	[more]
A0A397BHD7_9STRA	4.750e-13	44.79	Swi3 domain-containing protein n=5 Tax=Aphanomyces...	[more]
A0A482SX14_9ARCH	5.790e-13	44.68	Swi3 domain-containing protein n=1 Tax=archaeon Ta...	[more]
M4BUG3_HYAAE	9.530e-13	34.55	Swi3 domain-containing protein n=1 Tax=Hyaloperono...	[more]
A0A6A3STA2_9STRA	9.750e-13	37.89	Swi3 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A6G0QIQ9_9STRA	1.390e-12	36.59	Swi3 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A3R6ZL68_9STRA	1.490e-12	45.83	Swi3 domain-containing protein n=1 Tax=Aphanomyces...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	780.8
Seed ortholog evalue	4.5e-223
Seed eggNOG ortholog	2880.D7FKE8
Preferred name	CSM3
Model size	1758
KEGG ko	ko:K10904,ko:K10998
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
Exons	2
EggNOG free text desc.	replication fork protection
EggNOG OGs	KOG3004@1,KOG3004@2759
Ec32 ortholog description	Replication fork protection component Swi3
Ec32 ortholog	Ec-12_002330.1
Cds size	1758
COG Functional cat.	Q
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036,ko03400