mRNA_Ecto-sp6_S_contig100.728.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig100.728.1
Unique Name	mRNA_Ecto-sp6_S_contig100.728.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 835 bits (2157), Expect = 3.690e-300
Identity = 511/591 (86.46%), Postives = 531/591 (89.85%), Query Frame = 1

Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKK-QXXXXXXXXXXXXXXXXXXGGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEALRGKNTVAEPGPAAVVTSPPSTLAVESEETAGALDEEQASPERTIREDEAMEDAGSGASCANTAAAVVADDANDPAPVSAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAXXXXGA--NGITGGAKLDDAVLGGGDXXXXAPEPVAANGDEEGASFSSPAKCK---AAASGLPLSPLGSLFAGTDVSAEGGLAVARKPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGS EDSGMERTDAAGANNG+EPG DSTGVAAPEE TTAKKVSNRPPAFSENHLVKEKGLWQ+YKDFPQKC+Y GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GRARTRSL+RELRDTERDRVLEAK+GREAVDDVH+QEAARLAAKESKTAAAEGDRAEEREDEE AGSRY MEVDGDGGDEGKSDRQVAAEGSAAAMS+QVRQRIEANRRLALDRLR KK +    XXXXXXXXXXXXXX       AANDGSREVEDLEEDLMDVDGGGGPGD FDDDEAALADME E+MAARPVAAEA R KNTVAEPGPA V TSP STLAVES+ETAGA+DEE A PE +IREDEAMED GS AS ANTAAAVVADDA DPAPVSAAADGVARGGARAAGAGCAG+VDEA A  A  AA GGEP  TAGEESGGELPPASEPG P PGVGGG++RDGANDEAASL T  AXXXX    +GITGGAK+DDAVL    XXXXAPEPVAA GDEEGASFSSPAKC+   AAASGLPLSPLG+LFAGTDVSAEGGLAV R+PLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDGGDEGKSDRQVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDGGGGPGDGFDDDEAALADMETEQMAARPVAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAAAVVADDAKDPAPVSAAADGVARGGARAAGAGCAGNVDEAPATWAADAAGGGEPDATAGEESGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXXXXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDENV 591

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 767 bits (1980), Expect = 2.670e-274
Identity = 480/589 (81.49%), Postives = 483/589 (82.00%), Query Frame = 1

Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQXXXXXXXXXXXXXXXXXXGGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEALRGKNTVAEPGPAAVVTSPPSTLAVESEETAGALDEEQASPERTIREDEAMEDAGSGASCANTAAAVVADDANDPAPVSAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAXXXXGANGITGGAKLDDAVLGGGDXXXXAPEPVAANGDEEGASFSSPAKCKAA----ASGLPLSPLGSLFAGTDVSAEGGLAVARKPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQY GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDR EEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAA MSDQVRQRIEANRRLALDRLRLKKQ XXXXXXXXXXXXXXXXX         NDGSREVED EEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEA RGKNTVAEPGPAAVVTSPPSTLAVE                                                              GARAAGAGCAGSVDEASAKCAVAAAR GEPGTTAGEESGGELPPASEP APAPGVGGGRERDGANDEAASLGTTAA    GA+GITGGAKLDDAVLG   XXXX             ASFSSPAKC+      ASGLPLSPLGSLFAGTDVSAEGGLAVAR+PLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXXXXXXX---XXXXXXNDGSREVEDPEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTVAEPGPAAVVTSPPSTLAVER-------------------------------------------------------------GARAAGAGCAGSVDEASAKCAVAAARSGEPGTTAGEESGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXXXXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 525

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.120e-22
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 1

Query:  148 EEATTAKK-VSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            EE   AKK    R P FSE  LV+ KGL +I  DFP++ +   +G+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ R R  L  +RD ERDR + A++G++AV+
Sbjct:   52 EEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A397E7Y0_9STRA (Swi3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.780e-13
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  +Y  FP    +N     G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFP--THFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A397BHD7_9STRA (Swi3 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHD7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.750e-13
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  +Y  FP    +N     G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFP--THFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A482SX14_9ARCH (Swi3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX14_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 5.790e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1

Query:  166 KKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KK  N  P F E  LV   GL +IY +FP + +Y  + +E +FLR L+  YKEW +QL+PG++FED   +   L  ++R RS + ELRD ER R
Sbjct:   59 KKAKNAKP-FDEALLVGPHGLSRIYHEFPLRIRYQ-KNQEVQFLRQLLSLYKEWAFQLHPGLSFEDAILKISTLSHKSRVRSAVTELRDLERIR 150

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 76.6 bits (187), Expect = 9.530e-13
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 1

Query:  154 ATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            A++      R     E+HL+  +G  ++Y+ FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + L+ E+R+ ER + +E + G++  D
Sbjct:   39 ASSTPSKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6A3STA2_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.750e-13
Identity = 36/95 (37.89%), Postives = 56/95 (58.95%), Query Frame = 1

Query:  172 VSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLE 456
            V  R     E+HLV  +GL ++++ FP +   +  GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:    7 VQRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A6G0QIQ9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QIQ9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.390e-12
Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1

Query:   88 AAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLE 456
            AAGA  GS+   D    AA     T +    R     E+HLV  +GL ++++ FP +   +  GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:   22 AAGATAGSQDAVDDLVTAAAASVPTKR----RRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 140

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BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Match: A0A3R6ZL68_9STRA (Swi3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZL68_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.490e-12
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = 1

Query:  169 KVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNG---RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            K   +   FSE HL+  KG   +Y  FP    +NG    G E+E LR L+ AYKEW Y+LYPG+ FEDL  RTE +  +A   S L +LR  ER R
Sbjct:   49 KAKKKRATFSEQHLLGPKGFSLVYSSFP--THFNGAVTNGNESEALRELITAYKEWAYELYPGLNFEDLVDRTEIIAKKATVSSYLSDLRQQERKR 142

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5L0P4_9PHAE	3.690e-300	86.46	Swi3 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FKE8_ECTSI	2.670e-274	81.49	Swi3 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A836CM34_9STRA	2.120e-22	53.10	Swi3 domain-containing protein n=1 Tax=Tribonema m...	[more]
A0A397E7Y0_9STRA	1.780e-13	44.79	Swi3 domain-containing protein (Fragment) n=1 Tax=...	[more]
A0A397BHD7_9STRA	4.750e-13	44.79	Swi3 domain-containing protein n=5 Tax=Aphanomyces...	[more]
A0A482SX14_9ARCH	5.790e-13	44.68	Swi3 domain-containing protein n=1 Tax=archaeon Ta...	[more]
M4BUG3_HYAAE	9.530e-13	34.55	Swi3 domain-containing protein n=1 Tax=Hyaloperono...	[more]
A0A6A3STA2_9STRA	9.750e-13	37.89	Swi3 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A6G0QIQ9_9STRA	1.390e-12	36.59	Swi3 domain-containing protein n=1 Tax=Phytophthor...	[more]
A0A3R6ZL68_9STRA	1.490e-12	45.83	Swi3 domain-containing protein n=1 Tax=Aphanomyces...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	780.8
Seed ortholog evalue	4.5e-223
Seed eggNOG ortholog	2880.D7FKE8
Preferred name	CSM3
Model size	1758
KEGG ko	ko:K10904,ko:K10998
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
Exons	2
EggNOG free text desc.	replication fork protection
EggNOG OGs	KOG3004@1,KOG3004@2759
Ec32 ortholog description	Replication fork protection component Swi3
Ec32 ortholog	Ec-12_002330.1
Cds size	1758
COG Functional cat.	Q
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036,ko03400

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:324448..326703-
coding sequence from alignment at Ecto-sp6_S_contig100:324448..326703-

protein sequence of mRNA_Ecto-sp6_S_contig100.728.1

>prot_Ecto-sp6_S_contig100.728.1 ID=prot_Ecto-sp6_S_contig100.728.1|Name=mRNA_Ecto-sp6_S_contig100.728.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=586bp
MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPE
EATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYNGRGREAEFLR
GLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRV
LEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYA
MEVDGDGGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQ
EAAAAAAAAALVAEKENDGGAVAVPAANDGSREVEDLEEDLMDVDGGGGP
GDSFDDDEAALADMEAEEMAARPVAAEALRGKNTVAEPGPAAVVTSPPST
LAVESEETAGALDEEQASPERTIREDEAMEDAGSGASCANTAAAVVADDA
NDPAPVSAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTA
GEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAAAGAGANG
ITGGAKLDDAVLGGGDGGGGAPEPVAANGDEEGASFSSPAKCKAAASGLP
LSPLGSLFAGTDVSAEGGLAVARKPLGGLFSDENV*

mRNA from alignment at Ecto-sp6_S_contig100:324448..326703-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.728.1 ID=mRNA_Ecto-sp6_S_contig100.728.1|Name=mRNA_Ecto-sp6_S_contig100.728.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2256bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:324448..326703- (Ectocarpus species6 EcLAC_371)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGGAAGCGATGAAGACAGCGGCATGGAGCGAACCGATGCGGCCGGCGCTA
ACAACGGGAGCGAGCCTGGGCGGGATTCGACGGGGGTGGCGGCGCCAGAA
GAGGCCACCACTGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGA
GAACCACTTGGTCAAGGAGAAAGGGTTGTGGCAGATTTACAAGGACTTCC
CTCAAAAGTGTCAGTACAACGGCAGGGGACGCGAGGTACAGCAGCTCTAC
AGCAGTCTCTGTTTGAGTTTTTGAATTTTTGTACCGTTTTTGTATCGAGA
GACGTTCAGTCTCGACAGGAGGTGGCGTGCTGTGGTCGCCGGTGTACTCT
TTCGTGGATGCAAGGGTTAGGCTGGATCATAACGCCCAAGGTTCTCGACG
TTCTCCCTCGTATCAGTCACCCGCCTCGTGCTTTTTCTCTCGTGCTGCAG
TATGTATGCCCATGAACTGCGGTGGAACATCCTGGGTGTCCGAGCAACTG
GCAATGTCCCGCGCACACTTGCTGTGTGTAGGCGGGGAAAATATTACACA
AATGCGGTCGGCCACTTACCAGCAGCGGGCAAGTAGATTGCGCACCACGT
TACACTCTCAAACGTTCCACCCCCGTCACCAATGACAGATCCCCCGCATC
ACTCCCGACGACGCAAGGTCAATGGTCTAACTATGCAAGCCTCAAGTACG
CCCCCCCCATCCGCCCCCTCAATCGGCACCTAGGCCGAGTTCCTGCGAGG
TCTGATGGTCGCCTACAAGGAGTGGGGCTACCAGCTGTACCCAGGGGTCG
CCTTCGAGGACCTGGCCAGCCGGACGGAGAAGCTGGGCGGCAGGGCCCGC
ACCCGCAGCCTCTTGCGCGAGCTCCGGGACACGGAGCGGGACCGCGTGCT
GGAGGCCAAGTACGGCCGAGAGGCCGTAGACGACGTCCACGCGCAGGAGG
CAGCAAGGCTCGCCGCCAAGGAGAGCAAGACGGCGGCCGCCGAGGGGGAC
CGGGCCGAGGAGCGCGAGGACGAGGAACTCGCGGGTAGTCGCTACGCCAT
GGAGGTGGACGGAGACGGGGGCGACGAGGGAAAAAGTGACCGTCAGGTCG
CCGCCGAAGGGTCAGCGGCGGCCATGTCGGACCAGGTACGGCAACGCATC
GAGGCGAACCGCCGGTTGGCGCTCGACCGACTGCGCTTGAAAAAACAAGA
AGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGGTGGCAGAAAAGGAGAACG
ACGGGGGTGCTGTTGCCGTGCCCGCTGCGAACGACGGCAGCAGAGAAGTC
GAGGATCTGGAGGAGGATCTGATGGACGTAGATGGCGGCGGCGGGCCGGG
CGACAGCTTCGATGACGACGAAGCGGCGCTTGCGGACATGGAGGCAGAAG
AAATGGCCGCCCGGCCGGTTGCTGCTGAGGCCTTACGGGGGAAGAACACC
GTGGCGGAACCCGGGCCTGCTGCCGTTGTCACGTCCCCTCCTTCGACCTT
GGCGGTGGAGAGCGAGGAGACTGCTGGTGCCTTGGACGAGGAACAGGCGT
CGCCGGAGCGAACGATACGAGAAGACGAGGCAATGGAGGACGCCGGAAGC
GGAGCTTCCTGTGCTAATACTGCTGCTGCCGTTGTGGCCGATGATGCCAA
CGACCCGGCCCCTGTTTCTGCCGCCGCTGATGGGGTTGCAAGAGGGGGGG
CACGTGCAGCAGGCGCAGGGTGCGCCGGCAGCGTTGACGAAGCGTCGGCA
AAATGCGCTGTTGCTGCTGCAAGAGGTGGCGAGCCCGGTACTACCGCGGG
AGAGGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCCGGGCGCACCAG
CCCCGGGCGTAGGCGGCGGGCGAGAGAGAGACGGTGCGAACGATGAAGCT
GCCTCATTGGGAACGACGGCGGCGGCGGCGGGGGCAGGGGCTAATGGAAT
TACGGGGGGTGCTAAGTTAGATGATGCGGTTTTGGGCGGTGGTGATGGTG
GTGGAGGTGCCCCAGAGCCTGTAGCGGCGAACGGAGACGAGGAGGGGGCG
TCGTTCAGTAGTCCTGCCAAGTGCAAGGCGGCGGCGAGCGGTTTGCCGCT
GTCGCCGCTCGGCAGCCTGTTCGCCGGTACTGATGTTTCTGCGGAGGGGG
GGCTGGCGGTGGCGAGGAAGCCGCTAGGAGGACTCTTCTCGGACGAAAAC
GTCTAG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:324448..326703-

>mRNA_Ecto-sp6_S_contig100.728.1 ID=mRNA_Ecto-sp6_S_contig100.728.1|Name=mRNA_Ecto-sp6_S_contig100.728.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1758bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:324448..326703- (Ectocarpus species6 EcLAC_371)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGGAAGCGATGAAGACAGCGGCATGGAGCGAACCGATGCGGCCGGCGCTA
ACAACGGGAGCGAGCCTGGGCGGGATTCGACGGGGGTGGCGGCGCCAGAA
GAGGCCACCACTGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGA
GAACCACTTGGTCAAGGAGAAAGGGTTGTGGCAGATTTACAAGGACTTCC
CTCAAAAGTGTCAGTACAACGGCAGGGGACGCGAGGCCGAGTTCCTGCGA
GGTCTGATGGTCGCCTACAAGGAGTGGGGCTACCAGCTGTACCCAGGGGT
CGCCTTCGAGGACCTGGCCAGCCGGACGGAGAAGCTGGGCGGCAGGGCCC
GCACCCGCAGCCTCTTGCGCGAGCTCCGGGACACGGAGCGGGACCGCGTG
CTGGAGGCCAAGTACGGCCGAGAGGCCGTAGACGACGTCCACGCGCAGGA
GGCAGCAAGGCTCGCCGCCAAGGAGAGCAAGACGGCGGCCGCCGAGGGGG
ACCGGGCCGAGGAGCGCGAGGACGAGGAACTCGCGGGTAGTCGCTACGCC
ATGGAGGTGGACGGAGACGGGGGCGACGAGGGAAAAAGTGACCGTCAGGT
CGCCGCCGAAGGGTCAGCGGCGGCCATGTCGGACCAGGTACGGCAACGCA
TCGAGGCGAACCGCCGGTTGGCGCTCGACCGACTGCGCTTGAAAAAACAA
GAAGCGGCGGCGGCGGCGGCGGCGGCGGCGTTGGTGGCAGAAAAGGAGAA
CGACGGGGGTGCTGTTGCCGTGCCCGCTGCGAACGACGGCAGCAGAGAAG
TCGAGGATCTGGAGGAGGATCTGATGGACGTAGATGGCGGCGGCGGGCCG
GGCGACAGCTTCGATGACGACGAAGCGGCGCTTGCGGACATGGAGGCAGA
AGAAATGGCCGCCCGGCCGGTTGCTGCTGAGGCCTTACGGGGGAAGAACA
CCGTGGCGGAACCCGGGCCTGCTGCCGTTGTCACGTCCCCTCCTTCGACC
TTGGCGGTGGAGAGCGAGGAGACTGCTGGTGCCTTGGACGAGGAACAGGC
GTCGCCGGAGCGAACGATACGAGAAGACGAGGCAATGGAGGACGCCGGAA
GCGGAGCTTCCTGTGCTAATACTGCTGCTGCCGTTGTGGCCGATGATGCC
AACGACCCGGCCCCTGTTTCTGCCGCCGCTGATGGGGTTGCAAGAGGGGG
GGCACGTGCAGCAGGCGCAGGGTGCGCCGGCAGCGTTGACGAAGCGTCGG
CAAAATGCGCTGTTGCTGCTGCAAGAGGTGGCGAGCCCGGTACTACCGCG
GGAGAGGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCCGGGCGCACC
AGCCCCGGGCGTAGGCGGCGGGCGAGAGAGAGACGGTGCGAACGATGAAG
CTGCCTCATTGGGAACGACGGCGGCGGCGGCGGGGGCAGGGGCTAATGGA
ATTACGGGGGGTGCTAAGTTAGATGATGCGGTTTTGGGCGGTGGTGATGG
TGGTGGAGGTGCCCCAGAGCCTGTAGCGGCGAACGGAGACGAGGAGGGGG
CGTCGTTCAGTAGTCCTGCCAAGTGCAAGGCGGCGGCGAGCGGTTTGCCG
CTGTCGCCGCTCGGCAGCCTGTTCGCCGGTACTGATGTTTCTGCGGAGGG
GGGGCTGGCGGTGGCGAGGAAGCCGCTAGGAGGACTCTTCTCGGACGAAA
ACGTCTAG