mRNA_Ecto-sp6_S_contig100.718.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig100.718.1
Unique Name	mRNA_Ecto-sp6_S_contig100.718.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.718.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig100	contig	Ecto-sp6_S_contig100:263534..263840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	308
Hectar predicted targeting category	other localisation
Exons	1
Cds size	306

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348719.8373737-CDS-Ecto-sp6_S_contig100:263533..263839	1682348719.8373737-CDS-Ecto-sp6_S_contig100:263533..263839	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 263534..263839 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.718.1	prot_Ecto-sp6_S_contig100.718.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig100 263534..263839 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:263534..263840+
coding sequence from alignment at Ecto-sp6_S_contig100:263534..263840+

protein sequence of mRNA_Ecto-sp6_S_contig100.718.1

>prot_Ecto-sp6_S_contig100.718.1 ID=prot_Ecto-sp6_S_contig100.718.1|Name=mRNA_Ecto-sp6_S_contig100.718.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=102bp
SLPLLLLLLRRRRLESRRDFPPSSLLPPLLLLLLLLRGRVLLPFSDRWSS
LLRPLDPAPFEPSPSSLDLFPAAAAEEEERLSEVALRPAREEPSSEEELE
PE

mRNA from alignment at Ecto-sp6_S_contig100:263534..263840+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.718.1 ID=mRNA_Ecto-sp6_S_contig100.718.1|Name=mRNA_Ecto-sp6_S_contig100.718.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=307bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:263534..263840+ (Ectocarpus species6 EcLAC_371)
TCCCTGCCGTTGCTCCTGCTCTTGCTGCGCCGCCGCCGCTTGGAGTCGCG
CCGCGACTTCCCGCCGTCGTCACTGCTGCCGCCCCTGCTGCTGCTGCTGC
TGCTGCTGCGAGGACGGGTTTTGCTTCCTTTTTCGGACCGATGGTCCTCC
CTCTTGCGGCCCTTAGATCCTGCTCCCTTTGAGCCTTCACCATCCTCCCT
CGATCTCTTCCCCGCTGCTGCTGCTGAGGAGGAGGAGCGGTTGTCCGAGG
TTGCCTTGCGGCCGGCCCGAGAGGAACCCTCATCCGAGGAAGAACTGGAG
CCAGAGG

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:263534..263840+

>mRNA_Ecto-sp6_S_contig100.718.1 ID=mRNA_Ecto-sp6_S_contig100.718.1|Name=mRNA_Ecto-sp6_S_contig100.718.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:263534..263840+ (Ectocarpus species6 EcLAC_371)
TCCCTGCCGTTGCTCCTGCTCTTGCTGCGCCGCCGCCGCTTGGAGTCGCG
CCGCGACTTCCCGCCGTCGTCACTGCTGCCGCCCCTGCTGCTGCTGCTGC
TGCTGCTGCGAGGACGGGTTTTGCTTCCTTTTTCGGACCGATGGTCCTCC
CTCTTGCGGCCCTTAGATCCTGCTCCCTTTGAGCCTTCACCATCCTCCCT
CGATCTCTTCCCCGCTGCTGCTGCTGAGGAGGAGGAGCGGTTGTCCGAGG
TTGCCTTGCGGCCGGCCCGAGAGGAACCCTCATCCGAGGAAGAACTGGAG
CCAGAG