Homology
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match:
D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)
HSP 1 Score: 203 bits (517), Expect = 1.850e-60
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 3
Query: 252 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDEEDASSC 578
MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADD EDASSC
Sbjct: 1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGEDASSC 109
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match:
A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)
HSP 1 Score: 63.2 bits (152), Expect = 4.550e-9
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 3
Query: 318 LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 512
++ EER + A+ GE+LEDEI+ AT LR+ AD MV +TGA++ + ++P+IDEI LK++Y+ V+G
Sbjct: 1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.85e-60 / Id = 99.08 Expect = 4.55e-9 / Id = 49.23 Sequence D7FKG2_ECTSI A0A835YIM3_9STRA
Match Name E-value Identity Description
D7FKG2_ECTSI 1.850e-60 99.08 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A835YIM3_9STRA 4.550e-9 49.23 Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1561 Hectar predicted targeting category signal peptide Exons 3 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_002180.1 Cds size 567
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348722.745972-UTR-Ecto-sp6_S_contig100:227129..227143 1682348722.745972-UTR-Ecto-sp6_S_contig100:227129..227143 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 227130..227143 + 1682348722.782258-UTR-Ecto-sp6_S_contig100:228761..229741 1682348722.782258-UTR-Ecto-sp6_S_contig100:228761..229741 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 228762..229741 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348722.7547464-CDS-Ecto-sp6_S_contig100:227143..227482 1682348722.7547464-CDS-Ecto-sp6_S_contig100:227143..227482 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 227144..227482 + 1682348722.764358-CDS-Ecto-sp6_S_contig100:228045..228191 1682348722.764358-CDS-Ecto-sp6_S_contig100:228045..228191 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 228046..228191 + 1682348722.7733178-CDS-Ecto-sp6_S_contig100:228679..228761 1682348722.7733178-CDS-Ecto-sp6_S_contig100:228679..228761 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 228680..228761 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.714.1
>prot_Ecto-sp6_S_contig100.714.1 ID=prot_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=189bp
MHPGFVLHLAALPGIAHAFAGGWASFVVGADQHRQQQHRCAVGEPFARAG back to top mRNA from alignment at Ecto-sp6_S_contig100:227130..229741+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.714.1 ID=mRNA_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:227130..229741+ (Ectocarpus species6 EcLAC_371)CCACAACAGTGGAA ATGCATCCAGGTTTTGTGCTCCACCTCGCCGCCCTC
CCTGGAATAGCCCACGCCTTCGCCGGAGGATGGGCTTCTTTCGTGGTCGG
TGCTGACCAACATCGACAGCAGCAGCATCGCTGTGCTGTTGGTGAGCCCT
TCGCTCGAGCGGGTAGCAGTAGCAGGTTTGCTGGCTCCACGAGACGGCCC
CCTGCTGTTGCGGCGCCTGGAGCAGCACGTACGAGGCAGCAGCTCCGGCT
TATGCCCAACGAGTACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGGG
CGGACGCGACGAGAGACCTCGCACCCGAGGAGCGCGCGCAGAGAGCTATG
GAG GCAAGTTGACGTACTGCTGTCATGTGTAGCGTACATCAGAAGTGTAC
ATGACAAAGGTGCAATCAGCCCCCACCTCTCTGCGCTGCTGATGGCCTTC
TTTCCTGAGCAGATTAGTGCATACCTTGAGAGGAAAACCTTGTCTGGGGT
TTGTGTGGTAGAATGGTTGAGGCGAAAGGGTATGTCGCGCTGTTGCACAT
GATGACACAACATGCTCCGTGCGTCGCGCCGATATTTTGAGGAAAGGTTG
GCACCACGTGCATACTGCTGTCTCAGTAGGTAGTTGTAACAGCAGTAACT
ACATGTACAGCAAGTAGCAGCAGTTACCCAGCGACAGCAGTGTGCAGGCA
AAAGTATCCTGAGCTTCCTGCGCCAGACAAAGCTGCAGATGGTACGCGCT
TTAGAAAATGGCCAGATGCTGGAAACGCACAGGTACTTTTCTGACCTATG
AATCCGGAACTGTCCGCTATGCAGATGGTACGCGCAGTAGAAAAATATTT
CAAACCGCTGTGCACTGCTTGTGTGCTGACGAACGCTGCTGGTGTGGTTG
CTTGCTGGTGCTCAAGGGGGAGAAGCTAGAAGACGAAATCATTGAGATCG
CGACCGTGTTGCGAGAGAAAGCGGACGAAATGGTGGCCGAAACTGGCGCC
ATTAACTTCGAGATCATCCAGCCGATGATCGACGAGATCGCCGTCCTGAA
AAGCAAGTACAA GTGAGTGCCGAACACTACAAAACACACAAAAAGACTAG
TCTTTCTTGTGAGGTTTTACTTTACTTTCTAAAAATAGAATGAGGCAACC
AGAAACGCGTGAAACCGAAGATGTTCGTGCAGTCACAAGGCAGAAAAGAG
AGATGCCGCGCCGGACGTATTTAGGAACTGTTGATATCGTTGCTTACACG
TTCCACGTGGGGCTTCTCGTGCTGCTCCTGCGGCTGACACTGTCAGTCCT
TCTGCTCTCGTCTGTTTTTCGTTGTTCTAGTCTGTTGTTTTAATTTTGCG
TTCGAGTGATTTGAACCTCAGTTTTCAGCCGTCTTTGCATACCACACCTC
GAAACATCGCACAAAATTCGACGATTCGACACATTCCCTGGTGGGACCCA
TTGGCACTCATCGCTCGGCGAGCTCGGATGCACGCACACGCTGCTCCACG
CTCTCGCGCATGTTTCAACCCCGACTGGTTCTCTCTACGGAACACTTCAG
GGTGGTGATGGGGGCAACTGAGACCGCGGACGGAGACGGAGCTCCGGATG
CCGATGATGAAGAGGATGCCAGCTCTTGTTGA CCTAGACCACTCCTGCCA
GACGCCCATCGTTTCCTCTACGCTGCTAGGGCCGGAGGAAAGCCGTGCCC
GTGGCGGGTGGGTCCCTCGCTTGAAGCATTTGGAGAGGGATGGCGGGGGT
TGCCGAGGGGTGCAATGAGGTGGTAACCCCACCCGCTTGGACTCGCTAGG
GCCGGGTTTCCGCTTGTTTACTCTGATCGGGCTGTCGTTTTGCGCCCTCT
CTTGGAGGCTTCGTGCAGTCGTCCGAAGGTTAGATAGGATTTGGGTTGGC
CGGTTTGCGGTCTTGTTAGCGTGGTACTCGCTAACTATATTTATTCCTTT
TACTCGGGAGCTATGATAGTTTTGTCGTTTCATCGTGTTCTACTGTAGTG
TTTTCGTTTCAAGAGTGTTCATCAGGAGTGTGCAAGGAGTAGTATTGAAT
AGATATTATATCTCACTGCTGCTGCATCGCAATCAAACCGTCTTGGGCCG
CTCCTGGCTTGATTGGCTTCGGCATAAGATGCGCAATCGAAATGACCCAG
GTGTTAGACCATACCTTCCGTGTGGGCGCCGTAGTCTCTTCTTTAGAAGG
GAAATGCTGACATTTCGCACGTAGATCTAGCTGGACAGGATACGATGGAC
TCCCTCACAAGCACCGCACGGGAAGCGGTTGATGATTGTGCGAAACTGCC
GCAGGGCTGAAGGTGCTTTGTCGCACTCGGATTCTCCTTGTCCATGCTGG
GACCTTTCAGAATGGGGACACAACCATGTGTATGAGTGCCGAACACCTTG
AATGTTATCCGTGTAGCGGTCGGTGCCTCCCTACACTGGTGTAGTAGTGT
GACCGTTAGAATGTTTTGTGCTTGCTGCCCCGCTTTTGGAAGCGGTTGTG
TGTTTCGACAGAGCAGCTCGGTCGTGGAGGCGACTGCAGCGTGGTGTTGA
TTTGTGTCACGAGACCGTCGTGTTTGGCTTGTTGGCCCTTGAAATATCCC
CGTCTGATTGTA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:227130..229741+
>mRNA_Ecto-sp6_S_contig100.714.1 ID=mRNA_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:227130..229741+ (Ectocarpus species6 EcLAC_371) back to top