Homology
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI)
HSP 1 Score: 164 bits (414), Expect = 2.490e-50
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1
Query: 73 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV---QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMV QLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH
Sbjct: 35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)
HSP 1 Score: 124 bits (311), Expect = 6.070e-35
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA ++ ELQGK VS+IT DGR I+GN +G+DHTIN++L+ C ER+YS + VE +V LGLYI RGDNIAVIGE+DE D +DLS +RA P+KP+ H
Sbjct: 1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVE----------VVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR)
HSP 1 Score: 119 bits (298), Expect = 5.950e-33
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPV 312
MAA I + + KLVSVITGDGR ILGNLKG+D TINLVL+ ER+YS+ +G+E+ VQLGLYI RGDN+A+IGE+DE D DL+ RA+PL P+
Sbjct: 1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEE----------VQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE)
HSP 1 Score: 116 bits (290), Expect = 9.550e-32
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
M+ S+ L G++VSV+T DGR I+G LKGYD TIN++LE ER++S + GVEQ V LGLYI RGDN+AVIGE+DE D S DLS+I A+PL P++H
Sbjct: 1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQ----------VALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT)
HSP 1 Score: 115 bits (288), Expect = 1.920e-31
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA +++ G+ VSVIT DGRQI+G LKG+D TIN+++E C ER+YS S GVEQ V LGLYI RGDN+AV+GE+DE D + S IRAEPL PV H
Sbjct: 1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQ----------VFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL)
HSP 1 Score: 114 bits (286), Expect = 3.880e-31
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA+ ++ VSVIT DGRQI+G LKG+D TINL+L+ ER+Y+ + GVEQ V LGLYI RGDNIA+IGE+DE D++ DLS ++AEPL PV H
Sbjct: 1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQ----------VVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A)
HSP 1 Score: 114 bits (286), Expect = 3.880e-31
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA +I+ VSVIT DGR I+G LKG+D T+NL+L+ ER++S ++GVEQ V LGLYI RGDNIAVIGE+D+ D+S D+S IRAEPL PV H
Sbjct: 1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQ----------VLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
H2XL05_CIOIN (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=H2XL05_CIOIN)
HSP 1 Score: 114 bits (284), Expect = 7.820e-31
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA++++ L ++VS++T DGR I+G LKG+D T+NL+L+ ER++S S GVEQ V LGLYI RGDN+AV+GEVD+ DA+ DL ++A PL PV H
Sbjct: 1 MASALEPLVNRIVSIVTADGRMIVGTLKGFDQTVNLILDESHERVFSSSHGVEQ----------VMLGLYIIRGDNVAVVGEVDDTTDAALDLENMKAAPLNPVLH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC)
HSP 1 Score: 114 bits (284), Expect = 7.820e-31
Identity = 60/106 (56.60%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MAAS++ VSVIT DGR I+G LKG+D TINL+L+ ER+YS S GVEQ V LGLYI RGDN+AVIGE+D+ D DLS I+AEPL PV H
Sbjct: 1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQ----------VVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Match:
A0A7R9Y9D5_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9D5_9STRA)
HSP 1 Score: 114 bits (284), Expect = 1.080e-30
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 318
MA ++Q+ V +IT DGR I+GNL+GYD T NL+LE C ERI++ GVE+ V LGLYI RGDN+AVIGE+DE + DLS IRA+PLKP+ H
Sbjct: 12 MAGALQDWLNHAVCIITNDGRNIVGNLRGYDQTTNLILENCHERIFAPDEGVEE----------VPLGLYIIRGDNVAVIGELDEAMSQALDLSAIRAQPLKPLVH 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.707.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 2.49e-50 / Id = 96.47 Expect = 6.07e-35 / Id = 55.66 Expect = 5.95e-33 / Id = 57.69 Expect = 9.55e-32 / Id = 54.72 Expect = 1.92e-31 / Id = 55.66 Expect = 3.88e-31 / Id = 53.77 Expect = 3.88e-31 / Id = 54.72 Expect = 7.82e-31 / Id = 50.00 Expect = 7.82e-31 / Id = 56.60 Expect = 1.08e-30 / Id = 52.83 Sequence D7FKG9_ECTSI A0A835ZJ72_9STRA A0A5S6R3V4_TRIMR A0A7I8VGN1_9ANNE A0A6P6YHQ5_DERPT A0A8B7Z2R1_ACAPL UPI0014259F6A H2XL05_CIOIN UPI0006B0C9FC A0A7R9Y9D5_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 162.5 Seed ortholog evalue 1.1e-37 Seed eggNOG ortholog 2880.D7FKG9 Preferred name LSM8 Model size 321 KEGG ko ko:K12627 KEGG Pathway ko03018,ko03040,map03018,map03040 KEGG Module M00354,M00396 Hectar predicted targeting category other localisation GOs GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005688,GO:0005689,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0018130,GO:0019438,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030620,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034708,GO:0034709,GO:0034719,GO:0036211,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0070013,GO:0070034,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:0120115,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1990234,GO:1990904 Exons 5 EggNOG free text desc. mRNA splicing, via spliceosome EggNOG OGs KOG1784@1,KOG1784@2759 Ec32 ortholog description similar to U6 snRNA-associated Sm-like protein LSm8 isoform 2 Ec32 ortholog Ec-12_002120.1 Cds size 321 COG Functional cat. J Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko03019,ko03041
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348722.1237466-CDS-Ecto-sp6_S_contig100:182782..182813 1682348722.1237466-CDS-Ecto-sp6_S_contig100:182782..182813 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 182783..182813 + 1682348722.1359859-CDS-Ecto-sp6_S_contig100:183122..183163 1682348722.1359859-CDS-Ecto-sp6_S_contig100:183122..183163 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 183123..183163 + 1682348722.1448386-CDS-Ecto-sp6_S_contig100:183407..183527 1682348722.1448386-CDS-Ecto-sp6_S_contig100:183407..183527 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 183408..183527 + 1682348722.1535137-CDS-Ecto-sp6_S_contig100:183936..183974 1682348722.1535137-CDS-Ecto-sp6_S_contig100:183936..183974 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 183937..183974 + 1682348722.1622374-CDS-Ecto-sp6_S_contig100:184316..184407 1682348722.1622374-CDS-Ecto-sp6_S_contig100:184316..184407 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 184317..184407 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.707.1
>prot_Ecto-sp6_S_contig100.707.1 ID=prot_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=107bp
MAASIQELQGKLVSVITGDGRQILGNLKGYDHTINLVLEGCKERIYSQSR back to top mRNA from alignment at Ecto-sp6_S_contig100:182783..184407+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.707.1 ID=mRNA_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1625bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:182783..184407+ (Ectocarpus species6 EcLAC_371)ATGGCGGCATCCATCCAAGAGCTACAAGGCA GTAAGTGCCGTGTACTTGC
TCTCGTGACAGGTGCACAGCAGCTTTGTGTGCAACGCGATTACTCACAAG
GAACAATCCCAAGGGGCGTACAGTTGTATTGCCTTGGTTCTACCATAGTC
TAGACGACAGATAAGAGTGGACGAGTTGCTTGTTCATGATCTGATGCCCC
TGAGACGCAAGTTTTCCTTTAGCCAATACAGCCTTCTCCCACCCACCCCC
CTCCGCCGCCGTGTGCATGACTGCTGTGTGCCTACATGTAATGCCGACGC
GGGGCGTAACATCAATGCTGGCCGCACTTCCTTGTGCCAGAGCTCGTGTC
CGTCATCACAGGAGATGGCCGACAAATCTTG GTGAGCTGTTTAGACTGCA
GCATGTAGCAGTGCACTTTGCGCAAAATCGGAGTTCATTTTCAAATTCGC
GCCTTGTACTGTATCTCTCCGAGAGCTTGCATGGAGACTCCTCCTGTCCT
GTGCCAACGGTACAGTACCAAGCATGCTCCTTGTTCGTACGCACCGCGGG
TGCCTGCTACCTCTTCGAGAAGGCTTACTTAAAAGCTTTGCACCAATCTC
TCGCCATGTTCTTGTCTTTCATCAGGGAAACTTGAAGGGCTACGATCACA
CCATCAACCTTGTTCTGGAAGGATGCAAGGAGCGGATCTACTCTCAATCA
CGAGGGGTCGAACAGGCGAGGGAGACAGGCACTTACAGCAGCATG GTTGT
TCAAGTAGTGTGACGGGAAAACGGGCGATCCTGTTGTTGTTGGCGCCGGA
AGATACTAGCTGCGCTTCGCCTAGTCGAAGCATGCCGAATACTAGCTGGC
ACACACCCTGAACACTTGCTTTATAGCATTACGTTCTTTGCTCATTGCTG
GGTAACGTGAATTTCCCACCTAGATTACCTGTAAACTCAACACGGGTGTG
TGGTTCTATGGCCCACGTGGGAATGAGTACCAGCGAGATCTGCACGCTGC
CTCCCCCGTGATCAGATCTCCCAGCAGAAGGGAAATTCAGGCTTGTACCT
CCCTATCATCGAATGTTAGGGTTGATTTTTGTTTGCCTCCTCTTGGTTGC
GAACTGAACCTCCAACACCATTCGTTGCCGCCTCAACTCTGCGTTTACCC
GCAGGTTCAACTAGGTCTGTATATCTGCAGGGGAGACAACAT GTGAGTCC
GTCGCTTGGCCTACCGCACGCTGGTACCCTGGAAACGGCGACCGGCCCGT
GGCAAACACAAGTACATGCCATGGCGCTATTGCAACTTTTTGCCCCAAGT
TGTTCCGGGTATGCCATTTGAAACAGACACTTTAACCAGCGTTTGTGTTC
CAGGGTGTGGCAAAGCTTAACCCAAGAATCTTGTCGTCGTGATTGTTCAA
CTGCTGTGATTTATTTTTGATGGGTTCAATGTCCCGTGGTCCTGCATTTG
TTCGTCTTTGCCTGCGGTTGCGCTATTGACAAACAATTCACCAACAAAAC
TTGTTGCACGCTGCATCTCTTGCTTTGCACGCAGTGCTGTGATCGGGGAA
GTCGACGAGGTGGAGGACGCGAGCAAGGATCTCAGCAGAATTAGGGCAGA
ACCACTCAAACCGGTGACACATTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:182783..184407+
>mRNA_Ecto-sp6_S_contig100.707.1 ID=mRNA_Ecto-sp6_S_contig100.707.1|Name=mRNA_Ecto-sp6_S_contig100.707.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:182783..184407+ (Ectocarpus species6 EcLAC_371) back to top