Homology
BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match:
D7FK37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK37_ECTSI)
HSP 1 Score: 57.8 bits (138), Expect = 9.840e-10
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3
Query: 150 MEVGQRSPMGRYPSTGSQVGFGTTKH 227
MEVGQRSPMGRYPSTGSQVGFGTTKH
Sbjct: 1 MEVGQRSPMGRYPSTGSQVGFGTTKH 26
BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match:
A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)
HSP 1 Score: 57.4 bits (137), Expect = 1.160e-8
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query: 1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLY 99
VG GW H+RDL +PL+ GECIC R DCV+ LY
Sbjct: 62 VGEGWTHERDLVGDPLKAGECICRRADCVVNLY 94
BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match:
A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)
HSP 1 Score: 53.5 bits (127), Expect = 2.660e-7
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query: 1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGL 96
VG W H+RDLQ +PL+VGECIC+R DC G+
Sbjct: 61 VGQEWPHERDLQGDPLKVGECICTRPDCAGGI 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 9.84e-10 / Id = 100.00 Expect = 1.16e-8 / Id = 63.64 Expect = 2.66e-7 / Id = 62.50 Sequence D7FK37_ECTSI A0A6H5JGM7_9PHAE A0A6H5KE39_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 251 Hectar predicted targeting category other localisation Exons 2 Cds size 249
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348722.049451-CDS-Ecto-sp6_S_contig100:177800..178003 1682348722.049451-CDS-Ecto-sp6_S_contig100:177800..178003 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 177801..178003 + 1682348722.0594742-CDS-Ecto-sp6_S_contig100:179053..179099 1682348722.0594742-CDS-Ecto-sp6_S_contig100:179053..179099 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 179054..179099 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.705.1
>prot_Ecto-sp6_S_contig100.705.1 ID=prot_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLYNSTCGGARGKKKDLCTK back to top mRNA from alignment at Ecto-sp6_S_contig100:177801..179099+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.705.1 ID=mRNA_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1299bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:177801..179099+ (Ectocarpus species6 EcLAC_371)GTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAACCCTCTCCG
GGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTACA
ACAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTTTGCACAAAA
TGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTCT
CAG GTATGATGCCTCAGATACACCACCTCTGTCTACAGCAGTGTACGGTA
AGGACACGGGGGTGTCAGCATTTATCGTAGCGTGATTTCTCCACGACCAG
GAGGGTACCACTGCCGACAAGGTTAGTTTTGAAAAAATCACGTCAGGGCT
TGCCTGAGAGGTAGGTAGGTGTTCGCAACCTCGTCGCCGTGCTAACACCG
CCGTGCATTCTCTCGCATCCTTAAGGTAGGTCGTCTCCGAATTATAGACC
GCGCAAAGACACCACACGTAGAAACAACCCTATTTCTAGTTTGGTGTGTG
CGTTCTGCCTCTCCTTTTTTCTGGGATCTCGACCGTCGCCATGTGCGGTT
TGTTAATGGCATAGTACCGGGCGGTGCCCGACCCATCTCTGATCACATGT
CTCCCTCGCCCTGCTCCTCATTGAGTGACAGTTGTTCGGTTAGCCTTAGT
TGCTGTTTCTCACGTTAGCTCAATGGTAAGTACGAGGAATGTACCGTTCT
GCGTCGTTCTCTTTGAGGTTCTCTCCGTGTTGTGAGAAGAGCCTCAACCG
CTCCCCCGAAGACATCGGAAGAAGAATATGTACTGCTGTAGAACACCGCT
CATTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCCaAAAACCACCTAC
CATCCGAAGACATCGGGAGAAGTATATGTAATGCTGTAGAGCGCCGCTCA
TTTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATTGCACCTACCA
CCCGAAGACATCGGAAGAAGTATATGTACTGCTGTAGAGCGCCGCTCATT
TTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATAGCACCTACCATCT
ACAGTAGTAAGAATAACAGATGAAGTTACCACCACGTTGCATTCGCGATT
TTCAGGTGCGAGCCCTTCTGGAACATGTGGAACTGGAAGGCAGGGTACTC
GATTGCTGTGGTGCCGCCCAAGACGCAGTCTCCACCGTCCTGAGTTCACA
CGGTCTCCGTGTTGCAACAAACGACATGAACCCGACGTATGTGTGTGTCT
CAGGTCGGCTTCGGTACAACCAAGCACTGAATCCGAGGTGTTAGCGTAA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:177801..179099+
>mRNA_Ecto-sp6_S_contig100.705.1 ID=mRNA_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:177801..179099+ (Ectocarpus species6 EcLAC_371) back to top