Homology
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)
HSP 1 Score: 510 bits (1314), Expect = 1.020e-179
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 3
Query: 33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE
Sbjct: 1 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)
HSP 1 Score: 358 bits (919), Expect = 1.170e-119
Identity = 184/258 (71.32%), Postives = 208/258 (80.62%), Query Frame = 3
Query: 33 MAIGKTNKKGGRKGN-KKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEE--AVVA 797
MA+GKT KK G+KG KKKTVDP T KEWYDIKAPS F VRN GKTL+TRT GTKIASEGLKGRVFE SLGDLN DE+ G+RK+KLCCEDVQGT+ LT FHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IM++E SKCDL+ELV KF+ + +S I KA + I P+QNV IRK K LKKPKFDLTKLMEMH TED G + R EE AV A
Sbjct: 1 MAVGKTQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVARPAAAEEEPAVAA 254
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)
HSP 1 Score: 353 bits (907), Expect = 1.770e-117
Identity = 177/250 (70.80%), Postives = 205/250 (82.00%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEG 779
MA+GK + +KG KKK DP KEWYD+KAPS F R PGKTL+TRT+GTKIASEGL+GRVFEFSL DLN DE+ YRK+KLC E+VQGTS LTNFHGMDLTRDKLCSLIKKWQTLIE +VDV+TTDGY +R+ CIGFTK+ NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD ED+G + R EG
Sbjct: 26 MAVGKNKRLTKSKKGGKKKITDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
C5XD92_SORBI (40S ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI)
HSP 1 Score: 340 bits (872), Expect = 1.580e-112
Identity = 170/258 (65.89%), Postives = 207/258 (80.23%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
MA+GK + G+KG KKKTVDP + K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED YRK++L ED+QG +VLTNF GM T DKL SL+KKWQTLIE VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFD+ KLME+HGD ED+G++M+R EG+EA+ E
Sbjct: 1 MAVGKNKRISKGKKGGKKKTVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDIQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAMGGQE 258
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN)
HSP 1 Score: 338 bits (867), Expect = 1.110e-111
Identity = 168/257 (65.37%), Postives = 199/257 (77.43%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVAD 800
MA+GK + +KG KKK DP KEWY+IKAPS+F RN GKTLVTRT+GTKIAS+ LKGRVF+ SL DLN DED YRK+KL CED+QG + LTNFHGMD+TRDKL SLIKKWQTLIEG VDV+TTDGY LR+ CI FT K NQI + CYA ++Q+R +RKKM +IM +EA+KCDL+ELVLK IPE + EI KA I+P+QNV++RKVK LKKPKFDLTKLME+HGD ED G + RE EGEE A+
Sbjct: 1 MAVGKNKRLTKSKKGGKKKATDPFLKKEWYEIKAPSMFSQRNAGKTLVTRTQGTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGEEVAAAE 257
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
I1HW94_BRADI (40S ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI)
HSP 1 Score: 335 bits (859), Expect = 1.570e-110
Identity = 167/254 (65.75%), Postives = 203/254 (79.92%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
MA+GK + GRKG+KKK VDP T KEWYDIKAP +F RN GKTLV+RT+GTKIASEGLK RVFE SL DL DED YRK++L EDVQG +VLTNF GMD T DKL SL+KKWQTLIE VDV+TTD Y++R+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+G++++R EG+EA+
Sbjct: 1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFNTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMIRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ)
HSP 1 Score: 335 bits (858), Expect = 2.000e-110
Identity = 172/262 (65.65%), Postives = 207/262 (79.01%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER--EDE---GEEAVVAD 800
MA+GK + G+KG+KKKTVDP K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL DED YRK++L EDVQG +VLTNF GM T DKL SL+KKWQTLIE VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I EI KA SI+P+QNV++RKVK LK PKFDL KLME+HGD EDIG +++R EDE G+E A+
Sbjct: 1 MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAGQEVAAAE 262
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
A0A5J9WLA6_9POAL (40S ribosomal protein S3a n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WLA6_9POAL)
HSP 1 Score: 340 bits (871), Expect = 7.400e-110
Identity = 172/259 (66.41%), Postives = 208/259 (80.31%), Query Frame = 3
Query: 30 TMAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
TMA+GK + G+KG KKKTVDP K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED YRK++L EDVQG +VLTNF GMD T DKL SL+KKWQTLIE VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFDL KLME+HGD ED+G+++ER EG+E + E
Sbjct: 177 TMAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMASQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYK-EDVGVKLERPAEGDETMATPE 434
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
I1H8I6_BRADI (40S ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI)
HSP 1 Score: 333 bits (853), Expect = 1.220e-109
Identity = 168/254 (66.14%), Postives = 205/254 (80.71%), Query Frame = 3
Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
MA+GK + GRKG+KKK VDP T KEWYDIKAP +F RN GKTLV+RT+GTKIASEGLK RVFE SL DL ADED +RK++L EDVQG +VLTNF GMD T DKL SL++KWQTLIE VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+GM+++R +G+EAV
Sbjct: 1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQADEDQAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match:
A0A7S2W4V3_9STRA (40S ribosomal protein S3a n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2W4V3_9STRA)
HSP 1 Score: 332 bits (851), Expect = 2.140e-109
Identity = 166/247 (67.21%), Postives = 197/247 (79.76%), Query Frame = 3
Query: 33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMERED 773
MA+GK N+K G+KG KKK VDP K+WY ++APS+F R+ G TL TRT+GTKIASE LK RVFE SL DLN + +L YRK++LCC+DVQG VLTNFHGMD+TRDKLCSLIKKWQTLIE +VDVRTTDGY LR+ CIGFT+K NQIK+T YAQA Q+R +RKKM DIM+ E KCDL+ELV KF+ E I EI KA + IYP+QN YIRKVK LKKPKFDL KLME+H D T D+G +++RED
Sbjct: 1 MAVGK-NRKLGKKGRKKKVVDPFLKKDWYTVQAPSMFTHRDAGLTLCTRTQGTKIASETLKNRVFEVSLADLNDNAELAYRKIRLCCDDVQGDKVLTNFHGMDMTRDKLCSLIKKWQTLIEARVDVRTTDGYTLRLFCIGFTQKNKNQIKKTWYAQAGQVRQIRKKMVDIMTAECVKCDLKELVAKFVAETIGKEIEKAAEGIYPIQNCYIRKVKLLKKPKFDLVKLMELHAD-TGNDVGAKVDRED 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.02e-179 / Id = 100.00 Expect = 1.17e-119 / Id = 71.32 Expect = 1.77e-117 / Id = 70.80 Expect = 1.58e-112 / Id = 65.89 Expect = 1.11e-111 / Id = 65.37 Expect = 1.57e-110 / Id = 65.75 Expect = 2.00e-110 / Id = 65.65 Expect = 7.40e-110 / Id = 66.41 Expect = 1.22e-109 / Id = 66.14 Expect = 2.14e-109 / Id = 67.21 Sequence D7FKH7_ECTSI A0A835Z1K4_9STRA A0A7S2Y1J4_9STRA C5XD92_SORBI F0YJC6_AURAN I1HW94_BRADI RS3A_ORYSJ A0A5J9WLA6_9POAL I1H8I6_BRADI A0A7S2W4V3_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 1 Start 1 Seed ortholog score 509.6 Seed ortholog evalue 8.5e-142 Seed eggNOG ortholog 2880.D7FKH7 Preferred name RS3A Model size 1320 KEGG rclass RC00434 KEGG ko ko:K01807,ko:K02984 KEGG Reaction R01056 KEGG Pathway ko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010 KEGG Module M00004,M00007,M00165,M00167,M00177,M00179,M00580 Hectar predicted targeting category other localisation GOs GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 Exons 8 EggNOG free text desc. structural constituent of ribosome EggNOG OGs COG1890@1,KOG1628@2759 Ec32 ortholog description Ribosomal protein S3Ae Ec32 ortholog Ec-12_002020.1 EC 5.3.1.6 Cds size 774 COG Functional cat. J Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE br01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348721.316823-UTR-Ecto-sp6_S_contig100:116214..116246 1682348721.316823-UTR-Ecto-sp6_S_contig100:116214..116246 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 116215..116246 + 1682348721.3912039-UTR-Ecto-sp6_S_contig100:121883..122397 1682348721.3912039-UTR-Ecto-sp6_S_contig100:121883..122397 Ectocarpus species6 EcLAC_371 UTR Ecto-sp6_S_contig100 121884..122397 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348721.326429-CDS-Ecto-sp6_S_contig100:116246..116256 1682348721.326429-CDS-Ecto-sp6_S_contig100:116246..116256 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 116247..116256 + 1682348721.3342755-CDS-Ecto-sp6_S_contig100:116808..116854 1682348721.3342755-CDS-Ecto-sp6_S_contig100:116808..116854 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 116809..116854 + 1682348721.344607-CDS-Ecto-sp6_S_contig100:117663..117767 1682348721.344607-CDS-Ecto-sp6_S_contig100:117663..117767 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 117664..117767 + 1682348721.3519332-CDS-Ecto-sp6_S_contig100:118351..118425 1682348721.3519332-CDS-Ecto-sp6_S_contig100:118351..118425 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 118352..118425 + 1682348721.359416-CDS-Ecto-sp6_S_contig100:119612..119786 1682348721.359416-CDS-Ecto-sp6_S_contig100:119612..119786 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 119613..119786 + 1682348721.3667831-CDS-Ecto-sp6_S_contig100:120372..120524 1682348721.3667831-CDS-Ecto-sp6_S_contig100:120372..120524 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 120373..120524 + 1682348721.3740535-CDS-Ecto-sp6_S_contig100:121103..121213 1682348721.3740535-CDS-Ecto-sp6_S_contig100:121103..121213 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 121104..121213 + 1682348721.3811646-CDS-Ecto-sp6_S_contig100:121779..121883 1682348721.3811646-CDS-Ecto-sp6_S_contig100:121779..121883 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 121780..121883 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.696.1
>prot_Ecto-sp6_S_contig100.696.1 ID=prot_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=258bp
MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRT back to top mRNA from alignment at Ecto-sp6_S_contig100:116215..122397+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6183bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371)GCGAGCTCCCCCTCCTCGCACTCGGCGCAACC ATGGCGATCG GTGAGTCC
ATGCAAGGATAGCACGCTGATGGAGCTTGGGGTTAGCCGGGATTTGCGGT
GGAAATGGTACCTGAGATTCCTTATGGCCCGCGATTGCCTTGACTGGATT
AGGGGCCCATGTCGAGGCTGGCCTCTTTCGCTTGGTGGTGGATGCGCAAC
GTTGGACTTGCATCGACGGAGCTGTCAGATGCACACACCATACAGACACC
GAGAGGAGGATGGAGGTGTCAAGAGTGTACCTTGTTTGCTTTGTGGCCTC
CTTGCGTACGGCGTTGTCCTCACACGAAAATGTCCGCCGTAGCGTGCAGG
GCGTGTGGCTCTCATTTCTTCATCGCTGCCGCCGCCGCGCGGTAGCGTGG
AGAAAAGATGGCCACGACAAAAGGTATATCACACACCGGGGTTGTCCACG
ACGCCATGCCCTCTTTCACAGCTGCCATCCTTTGCTGGTGGTTCACGACT
TTCGTTCCCCCGCTGTTCTGAGGAAAACACCTGTGCTGCTGCTGCTCCTG
CTGCTGTTGTGTCACTTTCCCTCTCCTTGCTTCGTGTGTTGCAGGCAAGA
CCAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGAC GTGAGTTTGT
TGTGTTGGGAGTGTTGGAGAAAGTCGTGTGGGTGGGTGATAAAAGGCTTT
TGGTGTCGTCGGCAATCTTTTATCGAATTGGTGGGGACGCCAGACGTTCC
CATCCTGGTGTCGCAGGTGCTGCTTAAAAGTATGGATTGCATACGCTTTG
CTTTTGAATATCGACTGCTGCTGTGGGTTACGTCGTTCTACTCGAGTAGA
CACGAAACGGTGGCGAAAGTTGCCACTAAATTGGAAGCAAGTCGTTGCTG
GTTGCACGCCAGTCGACCACACGTTGTTGCGGCGGCTGTACGGCAGCAAC
TACGTTTTGCTACCCTGTTGACGTTGTCGGTGCTCCTTGTCTCAACTCTG
CGCCGTGTGCGTGTTGCCGTGTTACCTGGTGGGTACCGTAGTACTGCTGT
ACCCAAGAAATGGCCCATTTGAAGAACGTGAAAACCTCGTTTCCTTCAGT
TGATTAAAAGAAGTCAGGTGCCCATCAACATTAGATGACCCACTACTCAC
GCGGGCTCCACACACGTTCGCGTCAGGTCTTGACAGGGTTGCCCAGGGCT
GGCAGAGGATGACCGTAGAAAACTGAAGGCAATATCTACTTCCGTTTTTC
TCGGATACAGGCTTGGAACACCGATATTTTGTCGCTTGCAAGGCCGGCCT
CCTCGGAGTGCAAAACTGGCCGCCCGCGTTTCCGATAATTGACCAAACTT
ACCGGTGTAGCAGTTTTCCAGCATCCGGCACAGAGTAGTCACCCTCGCGA
GCATTTCGCGTTTTTTTGTTGTGGTTCTTTTGCGGCTTGCCGACGGCAGC
GTGGACCCCATGACCCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCAT
CTTCCAAGTGCGCAACCCGGGCAAGACTCTTGTCACGCGTACCAAGGGAA
CTA GTGAGTTCACTTGTCTCTTTTCCCTTTGTTGCATCCCGCTCCGAAGG
AAGAAGAGGATATAGGATGGGAGAAAGATAACAAACGTCTGCCGTCATCC
TCGTGTGCTTGTCTTTTTTTTCTTTTTTCTTTTTTTACTTTGCGGGCGTC
ATGCGCGTTGCGGTCTCCGCCAGCCTGGCGGCCACCTTACACCCGAGCGA
ATCTAGCTCACCGGGTTGGTTTTGCTTGTCTATGCGGATGAATAGAGGCG
CTCAAGCACAACCGTTGTGAGCCGTATGCACAGCTCGGAACGTGTAGTAT
CCTGCCCCCTTGTGTCATGCAGTGTTTGCGCCCTGTACTCACGTGAGCGC
ACGCTGCTTGGCCTCCAGCCCGTGACTAAATAGGTTTGTGTAGCAACTGA
CCACCACCGCAATCCCACCGCAGTCGTATGTGCCGAACACCAACGGGACA
GGTTGTTAGTCCCTGGCGTTTCTGTTGTCATTCTCATCCCCCCCCCGCCT
GTTCTGAAAAGTTCTCCTTCACGTTTGGATGCGTCTGCTGTTGTTACCGC
TGTTGCCGCCGCCACCGCCGGTCGCTGGTCGGAGCAGAGATCGCTTCGGA
GGGGCTTAAGGGGCGTGTGTTCGAGTTCTCTCTCGGAGACCTTAACGCCG
ACGAGGACCTG GTGAGGAGCAGTTGTTTGGTGCAAGGATCTTCCGAAGAG
CTTATTTCCTCTCGGAGGCGAAAACCTCAAGATCATCTCTCGTGTCGAAT
CCCCCCCCCACCCTCCGGGGTGCTTACTGTAGTAAATTGACCCTTCTGGT
CACGATTTGTAATTGCACTACGGTTGCTGTTGTAGACACAGTCTCCTCAA
GTGCCGTTTGCTTTTCTCTGTTGGATACCAAAGCGAGCGCAGGACCGTCG
TCGGTTACATGAGGAGTTGGACCCCTGAATGTGGCGTGTTTTTTCTACAA
CGCCCTTTGTAACAGCAGTATTGAGTTTGGACTTGAACGGCCGCTTCGGC
GCTTCGTACTGTGTTCAATTGTGTACTTTATTCGCAATTTCGATTGGCGG
ACGAATGCCCGGTTCGGTTCCCTTTGAAAGTATACTGGAAACATAGCCTC
GGCGCAGTTGAATTAAAGGATGTGGTGCGTGTTTAGTATTTTCTCTAGTC
TACAATCTCCATTTGCCGCTGATGAGCACTTTATGGGGCACCGCCCGCCG
TATTCCTCTTTGTTTGGACCCTGTGGGGACCTGATCGAATGGGTGACCAA
AACAATGACCAATTCAGTTTGCCGTTGCTGTGGTGTTGACATGTCAGATA
CCGATACTAGCCCTAATCGTACTTTTAGATTTCCACCCTCTTTCGGGTTG
TGAGCAAAGGCACTTTATTGTTTGGTTCGGTATCCTAAGCGTCCTCTGGG
ACTCTAGAATCAGAGGCGCGGGCAAAGCCCTCAGTGGTCTCCCAAGCTCG
GAACATTCGTGGAATACTCACGGCGAGGAGACCGGGCATAGGCAGACGTT
GACGAGGGCAAGCAGTAGTGACCTAACTCACAGGCACAAAGGTTATTCTA
AGCCCACAAGGCCGCCCTTACGGGAGGTGTTGTCGGGTTCAGCAGAGTCT
TGCCCGTCCGTTGCGGCAGACGACGTTTATTGGGGAAAGATCGACTGTTC
GCACGCAGCGACGATCATGGTGGTGCTTGGTTTTTCCAGAATATGCACAA
GCTCTTGCGGTTGACCTTCGAGACTGACCCAGTACAGTGTAGAGGTGGCC
CAAGCCTCGCTTGGTGCCTGTTTTTTGCAGCTTCCCGAACTCGCCCACCC
TGCGGCATGACTGATGTCTTGTTTCTTGCTCCTCCCTCTTTTTCTCAGGG
GTACCGGAAGGTGAAGCTGTGCTGCGAGGACGTCCAGGGCACCTCGGTCC
TCACCAACTTCCACGGAATGGACCTCACCCGCGACAAGCTCTGCTCGCTC
ATCAAGAAGTGGCAGACGCTTATCGAGGGACAGGTGGACGTCCGCACGAC
CGATGGCTACCTCCTCCGCATC GTGAGTGTACAAGTACAAACGAAAACAC
ACGGACTCGCCTTTTTTGTGCTTGAGGAAGGAAAAGCAGGAACGGCTCTT
TGTCAAACAGCTGGCTGGCGCGGGGATAAGAAGAAAGGCCGCTTCCATGG
TGTTTTTGTTTTCTAACCGGTGCTGGTACAAAATCGCTGTGTTCGTTCTG
GTGGTTCAGCTACGGGTTCGAGTTTGGCCGCGGAAAATATTATGGACGGC
AGTGTTGTCGTTAGGCACGCCTCTTGTTTTAACAGCGGCCCTGTCCCCTC
CGTTGTTGTCGTGCCGACACCAACCTGTTGGGCGCGTACACACGCGTTGT
TTCGCCCTTGACAACATGTTGAAGAAACGTATATACTTGTAAGATTGTCA
CCCTCATGTACGGCAGTCGATAGCGATTCTCGTTGCACATCGACTGTTGG
CCAGCCTGACCTTTCCTTTCGGCCCACAAATCGAAGGAGGCTAGCTTGAC
TCAGGCTCATGGCCGCAAGCCCGCTCCCTCTTCTCTACGGATGACGTCAC
TATGTACCACGTCCGCTTTTTGGTCCCGTTGGTCGACCTGCGTCGTGTTT
TGGCGCAGTCTTGCATCGGCTTCACCAAGAAGCAGGACAACCAGATCAAG
CAGACTTGCTACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGAT
GTGCGACATCATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCG
TGCTCAAGTT GTGAGTGCCTCTCCgCGCTACGAACCACGTTAATCAACAC
CTTGGTATGAAGTTACCCCGGCGCGTGTTTTTGCGTGCCGCTCACGTGGG
TTGGTGTGAAATCGTATCCCGCATTGTTGGCGAGAGTATGCATACATCCA
ACGAAAGAGTTTTTTTCAATGCCTCCAATTCTTGAATGCCACTTGGGGGG
GGTTCGTCAGCCGCTAATGAAAAATGACGTTTTAGTGAACGGATGGATGC
ATTGCCACGGAATACGGAGGCATTGACACACAAGAGAAGGTCAAAGCGCC
GGTAGGAGCAAATCTTGCCCCATGGCTTTATTAACTGCTGGGTGAATGAC
ACGGAACAACATGAACATCTCAGTGAAGCAGCAAGCGATCTTAACCAACA
CCGCGCGCCGCGACCAGTGCGTATGCTTCTGGCTTCCCTACCCGCCCTTT
GTGCGGGCAAGGTCTTGATGGGACTTCTCCTTGTACCTCTCCGCGATATG
ACATGAAATCACGTGTTGTTCTTCCCCCGCCTCGCACTCCTGCACCTTGT
TGACCATGGCCGTGTGCGCGATGTCGTGGTTTGTTGCAGCATCCCCGAGA
ACATCTCCGGAGAGATCCTCAAGGCTGTGCAGAGCATCTACCCCATGCAG
AACGTCTACATCCGCAAGGTCAAGGCGCTCAAGAAGCCCAAGTTCGACC G
TGAGTATTGTGCCCGTTTTGTTGCGTAACCCCGGATGATGTCCAGTCCTG
GGGACTCTCGACTTCAGCGCGGCGTGTGCCCCGGCGATGTCCTCAAGGAG
GTGTTGGAAGATGTACATCTATTGCTGTACATGTACACAGCCGCGTTTTT
TGTTTTTGTCGGATAGTTTTGGCTTCATCATTATCGCGTACCTTAAACTA
AAAACTAAACAACGCCGACTCTAAAGACACTATTAATAATTTTATTCACG
CATCTGACGGGAAATATTCATTTGCGTGGGCATTTCGTGTGTGCCAAGTA
TTCTCGATTGGGTTTTGCTCCCTCTGCGTTTGTGTGGATTTGAGTATCGT
GCGTCGGAGGCCGGCCCGCGACAACAGAAGTCATCAGCAAGGATGGTGCC
ATCTCCAGTCCTCTCCCAAAGTCGTCACTCTCGAGTTATTTTATATTTTG
TTTCAAAACCAACCCCGTTAAACTCGGAGATCCACCGCTGGGTAGCACAG
GACACGTGTATCGGCTGGCCTCATGACAACCCCGCTGCCTGCCCCCCTTT
ACCTTGTCGCTGCAGTCACCAAGCTGATGGAGATGCACGGTGACAACACC
ACCGAGGACATCGGCATGGAGATGGAGAGGGAGGACGAGGGCGAGGAAGC
TGTCGTTGCGGACGAGTAA AGCCCGACCCGCTAGCGGCGTGCTTTTCGCA
CTTCTTTCAGCCTTCCTTCGTTCGACCGGGCCACTCAGTCTCCTCGACTC
CTATTGTTGCAGATGTTGCCGTTGAACAGCAGTGTCGACCGTTCTTTAGC
GGAGATGTTGGGCGCGTTTGTTTCTGGGGAAAGGGATGATGCGGGGTGAG
GGGTCCTTCTCTTTTGCGTGGTTGGGTGGGGGTGTTGGGGGACACTTTCC
TCCTGGCCGGGAGGGTGCCGACTCTTTTGGGGGTCGCGCCCACTTAGCAT
CACCCTGCCGAGGATTGAATGGCTGCAAGCTCACAGAATTTGTTCACAGA
CAACTTGGCGCCTTCTCTTTTTGCAATCCGGTCGCTGCGGACGTATGTAC
GTGAGTCCATGTTCCCCGCCCCGGAGGATGGATCATGACTCCGTTTCGAC
GGCCGCCTGCACAAACGCATCGGTCGTTGGGCACGCACGACTTCCCGCCC
GTGATTCGCGTTGCTGTTTCGGGCATACACGCC back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:116215..122397+
>mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371) back to top