mRNA_Ecto-sp6_S_contig100.696.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI) HSP 1 Score: 510 bits (1314), Expect = 1.020e-179 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 3 Query: 33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE
Sbjct: 1 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA) HSP 1 Score: 358 bits (919), Expect = 1.170e-119 Identity = 184/258 (71.32%), Postives = 208/258 (80.62%), Query Frame = 3 Query: 33 MAIGKTNKKGGRKGN-KKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEE--AVVA 797
MA+GKT KK G+KG KKKTVDP T KEWYDIKAPS F VRN GKTL+TRT GTKIASEGLKGRVFE SLGDLN DE+ G+RK+KLCCEDVQGT+ LT FHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IM++E SKCDL+ELV KF+ + +S I KA + I P+QNV IRK K LKKPKFDLTKLMEMH TED G + R EE AV A
Sbjct: 1 MAVGKTQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVARPAAAEEEPAVAA 254
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA) HSP 1 Score: 353 bits (907), Expect = 1.770e-117 Identity = 177/250 (70.80%), Postives = 205/250 (82.00%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEG 779
MA+GK + +KG KKK DP KEWYD+KAPS F R PGKTL+TRT+GTKIASEGL+GRVFEFSL DLN DE+ YRK+KLC E+VQGTS LTNFHGMDLTRDKLCSLIKKWQTLIE +VDV+TTDGY +R+ CIGFTK+ NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD ED+G + R EG
Sbjct: 26 MAVGKNKRLTKSKKGGKKKITDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: C5XD92_SORBI (40S ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI) HSP 1 Score: 340 bits (872), Expect = 1.580e-112 Identity = 170/258 (65.89%), Postives = 207/258 (80.23%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
MA+GK + G+KG KKKTVDP + K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED YRK++L ED+QG +VLTNF GM T DKL SL+KKWQTLIE VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFD+ KLME+HGD ED+G++M+R EG+EA+ E
Sbjct: 1 MAVGKNKRISKGKKGGKKKTVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDIQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAMGGQE 258
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN) HSP 1 Score: 338 bits (867), Expect = 1.110e-111 Identity = 168/257 (65.37%), Postives = 199/257 (77.43%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVAD 800
MA+GK + +KG KKK DP KEWY+IKAPS+F RN GKTLVTRT+GTKIAS+ LKGRVF+ SL DLN DED YRK+KL CED+QG + LTNFHGMD+TRDKL SLIKKWQTLIEG VDV+TTDGY LR+ CI FT K NQI + CYA ++Q+R +RKKM +IM +EA+KCDL+ELVLK IPE + EI KA I+P+QNV++RKVK LKKPKFDLTKLME+HGD ED G + RE EGEE A+
Sbjct: 1 MAVGKNKRLTKSKKGGKKKATDPFLKKEWYEIKAPSMFSQRNAGKTLVTRTQGTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGEEVAAAE 257
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: I1HW94_BRADI (40S ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI) HSP 1 Score: 335 bits (859), Expect = 1.570e-110 Identity = 167/254 (65.75%), Postives = 203/254 (79.92%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
MA+GK + GRKG+KKK VDP T KEWYDIKAP +F RN GKTLV+RT+GTKIASEGLK RVFE SL DL DED YRK++L EDVQG +VLTNF GMD T DKL SL+KKWQTLIE VDV+TTD Y++R+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+G++++R EG+EA+
Sbjct: 1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFNTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMIRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ) HSP 1 Score: 335 bits (858), Expect = 2.000e-110 Identity = 172/262 (65.65%), Postives = 207/262 (79.01%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER--EDE---GEEAVVAD 800
MA+GK + G+KG+KKKTVDP K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL DED YRK++L EDVQG +VLTNF GM T DKL SL+KKWQTLIE VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I EI KA SI+P+QNV++RKVK LK PKFDL KLME+HGD EDIG +++R EDE G+E A+
Sbjct: 1 MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAGQEVAAAE 262
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A5J9WLA6_9POAL (40S ribosomal protein S3a n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WLA6_9POAL) HSP 1 Score: 340 bits (871), Expect = 7.400e-110 Identity = 172/259 (66.41%), Postives = 208/259 (80.31%), Query Frame = 3 Query: 30 TMAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
TMA+GK + G+KG KKKTVDP K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED YRK++L EDVQG +VLTNF GMD T DKL SL+KKWQTLIE VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +AS CDL+ELV KFIPE I EI KA SI+P+QNV+IRKVK LK PKFDL KLME+HGD ED+G+++ER EG+E + E
Sbjct: 177 TMAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMASQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYK-EDVGVKLERPAEGDETMATPE 434
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: I1H8I6_BRADI (40S ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI) HSP 1 Score: 333 bits (853), Expect = 1.220e-109 Identity = 168/254 (66.14%), Postives = 205/254 (80.71%), Query Frame = 3 Query: 33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
MA+GK + GRKG+KKK VDP T KEWYDIKAP +F RN GKTLV+RT+GTKIASEGLK RVFE SL DL ADED +RK++L EDVQG +VLTNF GMD T DKL SL++KWQTLIE VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I EI KA SI+P+QNVY+RKVK LK PKFDL KLME+HGD ED+GM+++R +G+EAV
Sbjct: 1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQADEDQAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A7S2W4V3_9STRA (40S ribosomal protein S3a n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2W4V3_9STRA) HSP 1 Score: 332 bits (851), Expect = 2.140e-109 Identity = 166/247 (67.21%), Postives = 197/247 (79.76%), Query Frame = 3 Query: 33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMERED 773
MA+GK N+K G+KG KKK VDP K+WY ++APS+F R+ G TL TRT+GTKIASE LK RVFE SL DLN + +L YRK++LCC+DVQG VLTNFHGMD+TRDKLCSLIKKWQTLIE +VDVRTTDGY LR+ CIGFT+K NQIK+T YAQA Q+R +RKKM DIM+ E KCDL+ELV KF+ E I EI KA + IYP+QN YIRKVK LKKPKFDL KLME+H D T D+G +++RED
Sbjct: 1 MAVGK-NRKLGKKGRKKKVVDPFLKKDWYTVQAPSMFTHRDAGLTLCTRTQGTKIASETLKNRVFEVSLADLNDNAELAYRKIRLCCDDVQGDKVLTNFHGMDMTRDKLCSLIKKWQTLIEARVDVRTTDGYTLRLFCIGFTQKNKNQIKKTWYAQAGQVRQIRKKMVDIMTAECVKCDLKELVAKFVAETIGKEIEKAAEGIYPIQNCYIRKVKLLKKPKFDLVKLMELHAD-TGNDVGAKVDRED 245 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.696.1 >prot_Ecto-sp6_S_contig100.696.1 ID=prot_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=258bp MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTback to top mRNA from alignment at Ecto-sp6_S_contig100:116215..122397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6183bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:116215..122397+ >mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371)back to top |