Homology
BLAST of mRNA_Ecto-sp6_S_contig100.686.1 vs. uniprot
Match:
D7FKI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI6_ECTSI)
HSP 1 Score: 167 bits (423), Expect = 1.800e-52
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1
Query: 1 MMPSMINLLVLLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGNKRGNDSHSFFLVA 261
MMPSMINLLVLLAAVL MMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLG KRGNDSHSFFLVA
Sbjct: 1 MMPSMINLLVLLAAVLHMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNMIISCFALMFFFIGCMFSVRICLGKKRGNDSHSFFLVA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.686.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.80e-52 / Id = 97.70 Sequence D7FKI6_ECTSI
Match Name E-value Identity Description
D7FKI6_ECTSI 1.800e-52 97.70 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 264 Hectar predicted targeting category signal peptide Exons 1 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_001930.1 Cds size 264
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348720.3637733-CDS-Ecto-sp6_S_contig100:60103..60367 1682348720.3637733-CDS-Ecto-sp6_S_contig100:60103..60367 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig100 60104..60367 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.686.1
>prot_Ecto-sp6_S_contig100.686.1 ID=prot_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
MMPSMINLLVLLAAVLQMMGAAAEDFEVSTGVGSIRAQDRDPFKEGYFNM back to top mRNA from alignment at Ecto-sp6_S_contig100:60104..60367+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.686.1 ID=mRNA_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:60104..60367+ (Ectocarpus species6 EcLAC_371)ATGATGCCCTCGATGATCAACCTCTTGGTGTTGTTGGCGGCGGTGCTTCA
AATGATGGGGGCGGCAGCAGAAGACTTCGAGGTTAGCACCGGAGTGGGCT
CGATCCGGGCGCAGGACCGCGACCCCTTCAAGGAGGGCTACTTCAACATG
ATCATCTCCTGCTTCGCCCTCATGTTCTTTTTCATCGGTTGCATGTTCAG
CGTCCGCATCTGCTTGGGCAATAAGCGCGGGAACGACTCCCACTCGTTCT
TCTTGGTCGCTTAA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:60104..60367+
>mRNA_Ecto-sp6_S_contig100.686.1 ID=mRNA_Ecto-sp6_S_contig100.686.1|Name=mRNA_Ecto-sp6_S_contig100.686.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:60104..60367+ (Ectocarpus species6 EcLAC_371) back to top