mRNA_Ecto-sp6_S_contig10.670.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.670.1
Unique NamemRNA_Ecto-sp6_S_contig10.670.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.670.1 vs. uniprot
Match: D7G8X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X3_ECTSI)

HSP 1 Score: 451 bits (1161), Expect = 8.830e-144
Identity = 389/690 (56.38%), Postives = 396/690 (57.39%), Query Frame = 2 
Query:    5 NFCGRGRQPRLSTTSSATTAASSRGG-----YSHFLQLWEDVCETHDGVRDFAFPPKGAVSSARGAFSEVLGEKRPEEQRRETFCELLGVLVGLEEIVDVLRASWWCRGVDLSLFGHGETTIL*EGALGGATAAAAGCLI*WKRALRKDDGESKSQVDSMDRDAVASASPARGRDPCIVHVSQPWAKESVINLYHWALSRRPDPPSLLVDKEEPRVLRKTRGGGGGLDDCPRKSKYTIGLAAEIRNHPVRPVHADWSVA*LGRFWLKYSPFPVLKPPTRVMQMKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARGEDGASWTGTRTTXXXXXXXXXXXXXXXXXWXXXXXSDARREGQ-RQQLLRGVAAGGLPVTLDRPPHNDRSRGSTTTIRQVEVAAATGEEQSAVPLPRDFRLWAFLALVGVLEACATLRALGVMALSLPVTLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRDRRPPQVDADSGGDRRRTTAVPFGRRPWQPHLPGGDAAAA-------------------AAGVGLGGLCGXXXXXXXXXXXXXXAAADVGLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSPARPPIGRRGGGIVNDLGLGLGASSSPATAVGGVRAVAAGVPGGIAQELQME 1999
            NFCGR RQPR+STTSSATTAASSRGG     YSHFLQLWEDVCETHDGVRDFAFPPKGAVSSARGAFSEVLGEKRPEEQRRETFCELLGVL                                                                                                                                                                                               MKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARGED ASW GTR  XXXXXXXXXXXXXXXXX XXXXX         RQQ LRGVAAGGLPVTLDRPPHNDRSRGSTTTIRQV VAAAT E QSAVPLPR+FRLWAFL L+GVLEACA LRALGV ALSLPVTLV XXXXXXXXXXXXXXXXXXXXXXXXXXRQRDRRPPQVDADSG DRRR TAVPFGRRPW+P+L GG AAA                    AA VGLGG   XXXXXXXXXXXXXX        G  XXXXXXXXXXXXX                                 RRSPARPP+GRRG   VNDLG+GL ASSSPATAVGGVRAVAAGVPGGIAQELQME
Sbjct:  352 NFCGRRRQPRISTTSSATTAASSRGGSDLPPYSHFLQLWEDVCETHDGVRDFAFPPKGAVSSARGAFSEVLGEKRPEEQRRETFCELLGVL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARGEDEASWAGTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQRLRGVAAGGLPVTLDRPPHNDRSRGSTTTIRQVGVAAATAEGQSAVPLPRNFRLWAFLTLLGVLEACAALRALGVTALSLPVTLVLXXXXXXXXXXXXXXXXXXXXXXXXXXRQRDRRPPQVDADSGDDRRRATAVPFGRRPWEPNLLGGVAAAXXXXXXXXXXXXXXXXXXXXAAAVGLGGXXXXXXXXXXXXXXXXXXGGSGARAGAPXXXXXXXXXXXXXTRRRSGGAASSGSPTRGRVPRRAR---------RRSPARPPMGRRGRECVNDLGIGLSASSSPATAVGGVRAVAAGVPGGIAQELQME 841
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BLAST of mRNA_Ecto-sp6_S_contig10.670.1 vs. uniprot
Match: A0A6H5JLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB3_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 4.730e-82
Identity = 326/705 (46.24%), Postives = 335/705 (47.52%), Query Frame = 2 
Query:   83 YSHFLQLWEDVCETHDGVRDFAFPPKGAVSSARGAFSEVLGEKRPEEQRRETFCELLGVLVGLEEIVDVLRASWWCRGVDLSLFGHGETTIL*EGALGGATAAAAGCLI*WKRALRKDDGESKSQVDSMDRDAVASASPARGRDPCIVHVSQPWAKESVINLYHWALSRRPDPPSLLVDKEEPRVLRKTRGGGGGLDDCPRKSKYTIGLAAEIRNHPVRPVHADWSVA*LGRFWLKYSPFPVLKPPTRVMQMKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARGEDGASWTGTRTTXXXXXXXXXXXXXXXXX--------WXXXXXSDARREGQRQQL-LRGVAAGGLPVTLDRPPHNDRSRGSTTTIRQVEVAAATGEEQSAVPLPRDFRLWAFLALVGVLEACATLRALGVMALSLPVTLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRDR---RPPQVDADSGGDRRRTTAVPFGRRPWQPHLPGGDAAAAAAGVGLGGLCGXXXXXXXXXXXXXXAAADVGLGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------RRSPARPPIGRRGGGIVNDLGLGLGASSSPATAVGGVRAVAAGVPGGIAQELQME 1999
            YSHFLQLWED+CETH GVRDF FPPKGAVSSARGAFSEVLGEKRPE+QRRE FCELL VL                                                                                                                                                                                               MKLEPRPPALRHFLAPWPTESTASSSTAAT LVGG                           XXXXXXXXXXXXXXXXX        W     SDARR  QR+QL LRGVAA GLPVT DRPPHNDR+RGST T RQ  V AAT EE SAVPLPRD RLW FL LVGVLEACA +RALGV ALSLPVTLV                           +Q  R   RPPQ+DADSGG R R TA+ FGRRPWQPHL GG  AA            XXXXXXXXXXXXX AAA V     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                      R+SPARPPIG RG G VN LGLGLGASS PATAVGGVRAVAAGVPGGIAQELQME
Sbjct:  604 YSHFLQLWEDICETHHGVRDFTFPPKGAVSSARGAFSEVLGEKRPEDQRREKFCELLEVL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLEPRPPALRHFLAPWPTESTASSSTAATGLVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGGIWLTGGGSDARRRDQREQLRLRGVAAEGLPVTPDRPPHNDRTRGSTATTRQAGVEAATAEEHSAVPLPRDLRLWVFLTLVGVLEACAAVRALGVTALSLPVTLVLTAIAPAVAAVAFSVSSRSRSCPSRQGQQERRKLSRPPQLDADSGGVRGRATALSFGRRPWQPHLLGG-VAAXXXXXXXXXXXXXXXXXXXXXXXXXGAAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGTPRRSGVVTSSSSPTRGRAPRGVRRKSPARPPIGHRGAGGVNALGLGLGASSFPATAVGGVRAVAAGVPGGIAQELQME 1116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8X3_ECTSI8.830e-14456.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLB3_9PHAE4.730e-8246.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2622030..2625416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1684
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004580.2
Cds size1167
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348719.2118182-UTR-Ecto-sp6_S_contig10:2622029..26221101682348719.2118182-UTR-Ecto-sp6_S_contig10:2622029..2622110Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2622030..2622110 +
1682348719.2198253-UTR-Ecto-sp6_S_contig10:2623240..26234211682348719.2198253-UTR-Ecto-sp6_S_contig10:2623240..2623421Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2623241..2623421 +
1682348719.2344346-UTR-Ecto-sp6_S_contig10:2625161..26254161682348719.2344346-UTR-Ecto-sp6_S_contig10:2625161..2625416Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2625162..2625416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348719.2272449-CDS-Ecto-sp6_S_contig10:2623994..26251611682348719.2272449-CDS-Ecto-sp6_S_contig10:2623994..2625161Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2623995..2625161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.670.1prot_Ecto-sp6_S_contig10.670.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2623995..2625161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.670.1

>prot_Ecto-sp6_S_contig10.670.1 ID=prot_Ecto-sp6_S_contig10.670.1|Name=mRNA_Ecto-sp6_S_contig10.670.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=389bp
MKLEPRPPALRHFLAPWPTESTASSSTAATRLVGGRRNREGQHQQEQARG
EDGASWTGTRTTRNGGGGGGSKSASFGGTWLNGGGSDARREGQRQQLLRG
VAAGGLPVTLDRPPHNDRSRGSTTTIRQVEVAAATGEEQSAVPLPRDFRL
WAFLALVGVLEACATLRALGVMALSLPVTLVLTAIAPAVAAVVFSVSSHP
RSWPSPWPRQRDRRPPQVDADSGGDRRRTTAVPFGRRPWQPHLPGGDAAA
AAAGVGLGGLCGGGGSGGGGGAAAAGAAADVGLGGVDGGSGGGGAAAATA
AIGLGGRGGTRRRSGGVASSSSPTRGRVPRGGRRRSPARPPIGRRGGGIV
NDLGLGLGASSSPATAVGGVRAVAAGVPGGIAQELQME*
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mRNA from alignment at Ecto-sp6_S_contig10:2622030..2625416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.670.1 ID=mRNA_Ecto-sp6_S_contig10.670.1|Name=mRNA_Ecto-sp6_S_contig10.670.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3387bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2622030..2625416+ (Ectocarpus species6 EcLAC_371)
GCGGAATTTCTGCGGCAGAGGGAGGCAGCCAAGACTCTCGACCACGTCAT
CGGCGACAACGGCCGCCTCCAGCCGAGGAGGGTCGGGTCTACCGCCTCGA
CGACGAAGGGGGGCACGCGGATAGAAATCAGGACGAGGAACTGCCGCGGA
GCTCCCGCCGACGGGAGGGACGGCGGCGTCACCGCACCACTCCCGCTGCT
ACGACAAGATAAGCAGCAGCAAGAGCGGCATTATCACTCCGGGCGACGGA
CGCCACCGCGAGCAACGCCACCGCACACCGTACACTCCCGCCACACCAAC
ACCACCCCGTCGAGGCGGGGACAGACGACTGGGACGCGCTCGGACCCCAC
CCCCCGCCCTGAACCTGCGTCGCCCCCCGTCGGGAACGGCGGCGGCGGCG
GCAGCGGCGCGGTGGCAGCCGCCGCCGCTGACGCCGCGGCCGAGGCGGTT
CGATTTTTTCACCAGATTTCCTCGCCTGTCCGGCTGTCGGCCGGCGGCGG
GTGGGGGGTGATGGATAGTCGCGAGGGAAGAGGAAGAGACGGTGGGGGTG
CCGGGGTGATGGGGGAAAGGGTACCAGGAGGGGGCAGAGAGAGGTTGGGG
GCTAGCAAGACATGGTTTTCGGGGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGGGTGGTGGCACTCGAGACGGCGCGGGCAACGGGGACGAAGACT
CGCGGCGGGGGCTGCAGGAGCACCGCGTTCACAGGGCGGACGTATGGAAG
TGGGAGTACTGCAAAGGGGTCGCGGTTTACGCCGTTGAGGTTGAGGTGCT
GGGGCAGAGCCTCGCGAGGAACGTCTATCGAAGGTGATGATTTCTTATTC
CTGTAGGTTGTACGGCGTAGGGAATACCTATCTGTGTAGTGGGGAGTTTC
TTCGTGGCGGTAGAGAGAAGGAGGAAGGGGAGGATCATCGTGTCAACGCA
TGCCGGAGTCGGTAGAGCATTGACCTAGGAGCAGGGGGTGGTGGTTGATA
GCTCTTTTCAGGTGTGAAACATCAGCAGTAGTGCGACTGCCTTGAAAAAA
CAAATTTCATCGAGTACAGAAACAACGAAATCACCGTCAATAACAACAGC
AACAGCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CACCAACCATCTAAACTACAACAATTTCAACAATCGCAACGACGTCCTTA
ACGCAACGCAGGTATTCCCACTTCCTCCAGCTCTGGGAGGACGTTTGCGA
GACCCATGACGGCGTCAGAGACTTCGCGTTCCCACCGAAGGGGGCAGTTT
CCAGCGCTAGGGGCGCTTTTTCTGAGGTGCTGGGCGAGAAGCGGCCGGAG
GAACAACGCCGGGAAACGTTTTGCGAGCTTCTTGGCGTTCTGGTGGGTTT
GGAGGAGATTGTTGATGTCTTGCGGGCTTCTtggTGGTGTCGTGGTGTAG
ATCTGTCTCTGTTTGGGCATGGGGAGACGACTATTCTGTAGGAAGGGGCG
CTTGGAGGAGCAACAGCCGCAGCGGCAGGGTGTTTGATTTGATGGAAAAG
AGCCCTCAGAAAAGACGACGGCGAATCGAAATCTCAGGTTGATTCCATGG
ACAGAGATGCTGTAGCATCGGCTTCCCCGGCAAGGGGTCGCGACCCATGC
ATTGTGCACGTCTCGCAACCCTGGGCGAAGGAGTCAGTGATCAACTTGTA
TCATTGGGCCTTATCGCGTAGACCCGACCCCCCGTCGCTGCTTGTGGACA
AGGAAGAACCGCGAGTGCTTCGCAAAACTCGGGGGGGGGGGGGGGGGCTT
GACGACTGTCCACGAAAATCAAAATACACCATCGGCTTAGCAGCCGAAAT
CCGAAATCACCCCGTCAGACCAGTCCACGCTGACTGGTCTGTTGCCTAAC
TGGGTAGATTTTGGCTAAAATACAGCCCCTTTCCGGTCCTCAAACCCCCA
ACGCGCGTCATGCAGATGAAACTCGAGCCACGACCCCCGGCCCTGCGCCA
CTTCTTGGCCCCTTGGCCGACTGAGAGCACTGCCAGCAGCAGCACCGCGG
CTACGAGACTTGTCGGGGGCCGTCGGAACCGAGAAGGGCAACACCAGCAA
GAACAAGCTCGTGGGGAAGACGGGGCATCGTGGACCGGCACACGCACGAC
AAGGAACGGCGGCGGCGGCGGCGGGTCTAAGAGCGCTTCATTTGGCGGCA
CCTGGCTCAACGGCGGGGGTAGTGACGCCAGGAGAGAGGGCCAGCGGCAG
CAGCTTCTTCGAGGGGTCGCGGCGGGAGGACTGCCGGTCACGCTCGACCG
GCCACCGCACAACGACAGGAGCAGGGGCAGCACCACTACGATCAGGCAGG
TGGAAGTGGCGGCAGCGACGGGTGAGGAGCAATCGGCCGTTCCCCTCCCC
CGGGACTTCAGGCTCTGGGCTTTCCTCGCTCTAGTTGGCGTCCTGGAGGC
TTGTGCCACTCTCCGCGCTCTCGGGGTGATGGCGCTGTCCCTGCCGGTGA
CCCTTGTCCTGACGGCGATCGCCCCCGCGGTGGCAGCCGTGGTGTTTTCA
GTCTCGTCTCACCCCCGCTCGTGGCCTTCGCCGTGGCCACGGCAGCGGGA
TCGACGTCCGCCTCAGGTCGACGCTGACTCCGGCGGCGATCGTCGTCGAA
CGACCGCCGTGCCATTCGGGCGGCGACCGTGGCAGCCACATTTACCCGGC
GGTGATGCTGCTGCCGCTGCTGCTGGTGTTGGATTAGGCGGCCTTTGTGG
TGGTGGTGGTAGCGGTGGTGGTGGTGGTGCTGCCGCTGCTGGCGCTGCTG
CTGACGTTGGTTTGGGCGGCGTTGATGGCGGTAGTGGTGGTGGTGGTGCT
GCTGCTGCTACTGCTGCTATTGGATTGGGCGGCCGCGGAGGCACCCGTCG
GAGAAGTGGCGGGGTCGCCTCAAGCAGCAGCCCGACTCGAGGTCGGGTGC
CGAGGGGGGGGAGACGACGATCGCCCGCAAGGCCGCCGATTGGCCGCCGG
GGGGGGGGGATTGTCAACGACTTAGGGTTAGGGTTAGGTGCCTCATCATC
TCCCGCGACGGCAGTCGGCGGGGTGCGGGCAGTAGCGGCGGGGGTTCCGG
GCGGCATCGCACAGGAGCTGCAGATGGAGTAGTAGTCGCTTTCCTGTCTG
CAGATATGTAGCCATGCCTTCGTACTGTAGTCGCCCTACCGTATGTTTCA
TCATAGTGAAATGGAAAAATGTCAGCACTCCTCGTGTTATGTGGTGCCCG
GTATCTTCTCTGCGCTGGGATGCCGCCTGCATCGCGAAAACAACGGTGAC
GAGAACTGCGGCCTCGGTGTATACGGGCGTTGCCTTGGATGGGGGCATCT
TGGGTGCCTTTTATCTTGGGTTAGAGGAAGCAACCCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2622030..2625416+

>mRNA_Ecto-sp6_S_contig10.670.1 ID=mRNA_Ecto-sp6_S_contig10.670.1|Name=mRNA_Ecto-sp6_S_contig10.670.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1167bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2622030..2625416+ (Ectocarpus species6 EcLAC_371)
ATGAAACTCGAGCCACGACCCCCGGCCCTGCGCCACTTCTTGGCCCCTTG
GCCGACTGAGAGCACTGCCAGCAGCAGCACCGCGGCTACGAGACTTGTCG
GGGGCCGTCGGAACCGAGAAGGGCAACACCAGCAAGAACAAGCTCGTGGG
GAAGACGGGGCATCGTGGACCGGCACACGCACGACAAGGAACGGCGGCGG
CGGCGGCGGGTCTAAGAGCGCTTCATTTGGCGGCACCTGGCTCAACGGCG
GGGGTAGTGACGCCAGGAGAGAGGGCCAGCGGCAGCAGCTTCTTCGAGGG
GTCGCGGCGGGAGGACTGCCGGTCACGCTCGACCGGCCACCGCACAACGA
CAGGAGCAGGGGCAGCACCACTACGATCAGGCAGGTGGAAGTGGCGGCAG
CGACGGGTGAGGAGCAATCGGCCGTTCCCCTCCCCCGGGACTTCAGGCTC
TGGGCTTTCCTCGCTCTAGTTGGCGTCCTGGAGGCTTGTGCCACTCTCCG
CGCTCTCGGGGTGATGGCGCTGTCCCTGCCGGTGACCCTTGTCCTGACGG
CGATCGCCCCCGCGGTGGCAGCCGTGGTGTTTTCAGTCTCGTCTCACCCC
CGCTCGTGGCCTTCGCCGTGGCCACGGCAGCGGGATCGACGTCCGCCTCA
GGTCGACGCTGACTCCGGCGGCGATCGTCGTCGAACGACCGCCGTGCCAT
TCGGGCGGCGACCGTGGCAGCCACATTTACCCGGCGGTGATGCTGCTGCC
GCTGCTGCTGGTGTTGGATTAGGCGGCCTTTGTGGTGGTGGTGGTAGCGG
TGGTGGTGGTGGTGCTGCCGCTGCTGGCGCTGCTGCTGACGTTGGTTTGG
GCGGCGTTGATGGCGGTAGTGGTGGTGGTGGTGCTGCTGCTGCTACTGCT
GCTATTGGATTGGGCGGCCGCGGAGGCACCCGTCGGAGAAGTGGCGGGGT
CGCCTCAAGCAGCAGCCCGACTCGAGGTCGGGTGCCGAGGGGGGGGAGAC
GACGATCGCCCGCAAGGCCGCCGATTGGCCGCCGGGGGGGGGGGATTGTC
AACGACTTAGGGTTAGGGTTAGGTGCCTCATCATCTCCCGCGACGGCAGT
CGGCGGGGTGCGGGCAGTAGCGGCGGGGGTTCCGGGCGGCATCGCACAGG
AGCTGCAGATGGAGTAG
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