mRNA_Ecto-sp6_S_contig10.669.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.669.1
Unique NamemRNA_Ecto-sp6_S_contig10.669.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.669.1 vs. uniprot
Match: D7G8X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X3_ECTSI)

HSP 1 Score: 636 bits (1641), Expect = 7.610e-221
Identity = 330/415 (79.52%), Postives = 334/415 (80.48%), Query Frame = 1 
Query:    1 MHLGPEDLAIAAPAAFFPLFGDLNNPSASMDAVDPIFALVAVNPLLAAVVLPVYFALSVWSTHRVVDFLLTWSATQTAKRCDRWAQECEATPASSWWQRRVEPFIFPSQKHRSRFWKDVEKFEACPKYVQELRLIATPATSGGDATPTPARAFSSITNEHHNGKGDSRRCSVLLGTIRKGTARAWREIRASAKRVGAVAKCAWSETREKVYFAVLKKNGIERKVGGSSCSVVGGHSPAQPRKAPSDEDRVLAAHRALRGSDTTGAVRLAFGLNTVFFVVAGLRFYLRKSRGGRLRSREWHRHWRRWQQRGNGGNRTRVVVHGDADNXXXXXXXSTAGNSPLQSRDSVASTSWRLRAREPCLAWGDWDDAFLKIFLTEEARTSRHPVKWRRQVEESYHRAALPTLARQWNVPFLSK 1245
            MHLGPEDLAIAAPAAFFPLFGDLNNPSASMDAVDPIFAL AVNPLLAAVVLPVYFALSVWSTHRVV FLLTWSATQTAKRCDRWAQECEATPASSWWQRRV PFIFPSQKHRSRF +DVEKFEACPKYVQELRLIATPAT+GGDATPTPARAFSSITNEHHNGKGDS RCSV LGTIRKGTARAWREIRA+AKRVGAVAKCAWSETREKVYFAVLKK GIERKVGGSSCSVVGGHSPAQPRKAPSDEDRVLAA R LRGSDTT AVRLAFGLNT                                                                 PLQSRDSVAS SWRLRAREPCLAW DWDD  LK+FL EEARTSRHPVKWRRQVEE YHRAALPTLARQWNVPFLSK
Sbjct:    1 MHLGPEDLAIAAPAAFFPLFGDLNNPSASMDAVDPIFALAAVNPLLAAVVLPVYFALSVWSTHRVVYFLLTWSATQTAKRCDRWAQECEATPASSWWQRRVVPFIFPSQKHRSRFCRDVEKFEACPKYVQELRLIATPATAGGDATPTPARAFSSITNEHHNGKGDSHRCSVFLGTIRKGTARAWREIRAAAKRVGAVAKCAWSETREKVYFAVLKKTGIERKVGGSSCSVVGGHSPAQPRKAPSDEDRVLAAQRTLRGSDTTSAVRLAFGLNT-----------------------------------------------------------------PLQSRDSVASPSWRLRAREPCLAWRDWDDLSLKVFLAEEARTSRHPVKWRRQVEEFYHRAALPTLARQWNVPFLSK 350
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.669.1 vs. uniprot
Match: A0A6H5JLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB3_9PHAE)

HSP 1 Score: 502 bits (1292), Expect = 4.730e-165
Identity = 273/412 (66.26%), Postives = 287/412 (69.66%), Query Frame = 1 
Query:   16 EDLAIAAPAAFFPLF--GDLNNPSASMDAVDPIFALVAVNPLLAAVVLPVYFALSVWSTHRVVDFLLTWSATQTAKRCDRWAQECEATPASSWWQRRVEPFIFPSQKHRSRFWKDVEKFEACPKYVQELRLIATPATSGGDATPTPARAFSSITNEHHNGKGDSRRCSVLLGTIRKGTARAWREIRASAKRVGAVAKCAWSETREKVYFAVLKKNGIERKVGGSSCSVVGGHSPAQPRKAPSDEDRVLAAHRALRGSDTTGAVRLAFGLNTVFFVVAGLRFYLRKSRGGRLRSREWHRHWRRWQQRGNGGNRTRVVVHGDADNXXXXXXXSTAGNSPLQSRDSVASTSWRLRAREPCLAWGDWDDAFLKIFLTEEARTSRHPVKWRRQVEESYHRAALPTLARQWNVPFLSK 1245
            E +A++A  A  PL   GDLNNP  SMD VDPIFALVAVNPLLAAV LPVYFALSVWSTHRV  FLLTWSATQTAKRCDRW QECE T ASSWWQRRV P IFPSQ HRSRF +D +KFEACPKYVQELRLIA PA  GGDATPTPARAFSSITNEHH+GKG+  RCSV LGTIR+G ARAWRE+RA+AK VGAVAKCAWSE REK Y AVLKK G +RKVGGSSCSVVGGHSPAQPR APS  DRVLAA RALRGSDTTGAVRLAFGLNTVFFVVAGLR                                                                     RLRAR+PCLAWGDWDDA LK F+ EE             V+E YHRAALPTLARQWNVPFLSK
Sbjct:   10 EGVALSASLASRPLAAAGDLNNPPTSMDTVDPIFALVAVNPLLAAVALPVYFALSVWSTHRVFHFLLTWSATQTAKRCDRWVQECEGTLASSWWQRRVVPLIFPSQTHRSRFCRDADKFEACPKYVQELRLIAAPAIPGGDATPTPARAFSSITNEHHSGKGEHHRCSVFLGTIRRGAARAWREVRAAAKHVGAVAKCAWSERREKAYSAVLKKTGTKRKVGGSSCSVVGGHSPAQPRTAPSQVDRVLAARRALRGSDTTGAVRLAFGLNTVFFVVAGLR---------------------------------------------------------------------RLRARKPCLAWGDWDDASLKSFMEEE-------------VDEFYHRAALPTLARQWNVPFLSK 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8X3_ECTSI7.610e-22179.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLB3_9PHAE4.730e-16566.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2618336..2621671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1269
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_004580.1
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348719.155013-CDS-Ecto-sp6_S_contig10:2618335..26183751682348719.155013-CDS-Ecto-sp6_S_contig10:2618335..2618375Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2618336..2618375 +
1682348719.164769-CDS-Ecto-sp6_S_contig10:2618732..26189101682348719.164769-CDS-Ecto-sp6_S_contig10:2618732..2618910Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2618733..2618910 +
1682348719.1751976-CDS-Ecto-sp6_S_contig10:2619340..26201391682348719.1751976-CDS-Ecto-sp6_S_contig10:2619340..2620139Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2619341..2620139 +
1682348719.1823657-CDS-Ecto-sp6_S_contig10:2620756..26208731682348719.1823657-CDS-Ecto-sp6_S_contig10:2620756..2620873Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2620757..2620873 +
1682348719.1896164-CDS-Ecto-sp6_S_contig10:2621536..26216711682348719.1896164-CDS-Ecto-sp6_S_contig10:2621536..2621671Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2621537..2621671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.669.1prot_Ecto-sp6_S_contig10.669.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2618336..2621671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.669.1

>prot_Ecto-sp6_S_contig10.669.1 ID=prot_Ecto-sp6_S_contig10.669.1|Name=mRNA_Ecto-sp6_S_contig10.669.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=423bp
MHLGPEDLAIAAPAAFFPLFGDLNNPSASMDAVDPIFALVAVNPLLAAVV
LPVYFALSVWSTHRVVDFLLTWSATQTAKRCDRWAQECEATPASSWWQRR
VEPFIFPSQKHRSRFWKDVEKFEACPKYVQELRLIATPATSGGDATPTPA
RAFSSITNEHHNGKGDSRRCSVLLGTIRKGTARAWREIRASAKRVGAVAK
CAWSETREKVYFAVLKKNGIERKVGGSSCSVVGGHSPAQPRKAPSDEDRV
LAAHRALRGSDTTGAVRLAFGLNTVFFVVAGLRFYLRKSRGGRLRSREWH
RHWRRWQQRGNGGNRTRVVVHGDADNNNNSSGGSTAGNSPLQSRDSVAST
SWRLRAREPCLAWGDWDDAFLKIFLTEEARTSRHPVKWRRQVEESYHRAA
LPTLARQWNVPFLSKVSGSVDA*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:2618336..2621671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.669.1 ID=mRNA_Ecto-sp6_S_contig10.669.1|Name=mRNA_Ecto-sp6_S_contig10.669.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3336bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2618336..2621671+ (Ectocarpus species6 EcLAC_371)
ATGCATCTTGGCCCGGAGGATCTTGCAATCGCAGCACCAGGTGAGACGGG
GAACAGGTGCTACACAAACCCGGGAGGGATAAGGGGGGAGGAGATGCAGC
AGCATTGTGTAGGACGGGTGGGTCTCCTTCGTGTGCGATTCTCGCTCTCT
CTCCTTGTCTAGCCTCCAATACAACCGCAGAAACCGGATGCATGCGGAGC
ATTATTGCAGCAGTTGCCTCCATAAAATCCGTAAAGGCCAGGCCAGGCTA
GGCTGCGGTGCACGCGTCGTTTAGTCCAGTGAAAAGGGGGGGCGGCACAG
GTGCTTCGCATACTGCTCAGCGCATGACTTTCACATGGATCCCATCATCA
TAAAGGTATTGCTCTTTCTGCGTCCCTGGCTTCCCGCCCTTTCGCAGCCG
CATTTTTCCCGTTGTTCGGAGATCTCAACAACCCGTCCGCCAGCATGGAT
GCGGTGGATCCAATCTTTGCTCTGGTAGCGGTGAACCCGCTTCTTGCTGC
TGTGGTCCTTCCTGTGTACTTCGCCCTCTCAGTCTGGAGCACGCACCGAG
TGGTAGATTTTCTGCTCACCTGGAGGTAAGAGCAAAGCGCCAGTACACAG
AGCGCGCCGGCACTACTGCTGTACAGTAGAAACTTGGGCCGAAAATACCA
CAAAACCTCGGAACTTGAGCAGCACCGTTTTTGAGCTACAACGCACTGCT
GCTGTAGGTCAAGAATAATCGCACTAAATAAAAAAAGCATGTACTGGTAG
TTCGGAGCATGACCCTAGGAACAAAGAAGCCCGCCCTTGGCGAACGCTGA
AGGTTTGAAGTGCGGGCTCATTCTGTATTCATTCTTGTAGAGGACGAGGG
ACTTCGGCCCACCGTACGGTAAATCTAAATCTATATCAGCTGCAGTTTTG
ACCCACCAGTCGGCATGTAACCAGCGGATGATGGTGTATTGTATGTAAAA
ACTGAAACACGTGTGTTCGCGTTTTTTCTTCCCGCATAATGCTGCTTGTT
TCCAGCGCCACGCAGACTGCCAAGAGGTGCGACCGCTGGGCACAAGAGTG
CGAAGCCACGCCGGCCTCCTCCTGGTGGCAGCGCCGTGTCGAACCGTTCA
TTTTTCCTTCACAGAAACACCGGTCGAGGTTCTGGAAAGATGTGGAGAAG
TTCGAGGCTTGCCCAAAGTACGTGCAAGAACTCCGTCTCATCGCCACACC
TGCGACCTCCGGCGGGGATGCCACGCCTACGCCTGCTCGTGCGTTCAGTT
CGATCACCAACGAGCACCACAACGGCAAGGGAGATTCCCGCCGTTGTTCC
GTTCTTCTCGGGACCATCAGGAAAGGGACCGCAAGGGCGTGGAGAGAAAT
TCGCGCTTCCGCCAAGCGTGTGGGCGCCGTTGCGAAGTGCGCGTGGAGCG
AGACAAGGGAAAAGGTTTACTTCGCCGTGCTCAAGAAAAATGGCATCGAG
CGAAAAGTCGGCGGCAGCAGCTGCAGCGTTGTCGGTGGGCACTCACCCGC
CCAGCCCCGCAAGGCTCCCAGCGACGAAGACAGGGTTCTGGCCGCACATA
GAGCCCTACGTGGGTCCGACACAACGGGAGCTGTGCGGCTGGCGTTCGGC
CTCAACACGGTGTTTTTCGTAGTCGCGGGTCTCCGGTTCTATCTGCGAAA
ATCCAGAGGGGGGCGTTTGCGTTCCCGTGAATGGCATCGGCATTGGCGGC
GGTGGCAACAGCGGGGGAACGGTGGCAACCGCACGAGGGTCGTGGTTCAT
GGAGATGCAGACAACAACAACAACAGCAGCGGCGGCAGCACAGCGGGAAA
CTCGGTAGGAATGGGGCGGGATTGGGGGGATATGGGGGGGTGCTAGGGGT
CAAATTTCTAATCTGTCTTTGGTCGGACTAAACCGATATCCGTCAAGGAA
GGTAGGAGGCATACAGTACACCCATTTGTTTGCTTTTGGGCGTCGTCAGT
TGACGGGCGATATTGGGAAATCATTAACTGCTGGCGAGAGATTCCAGCAG
GCCGACTGACGGCCTGTATCTTTGCTCCTGGGAAGATCATACCCCGCTTC
CCGCCTCCCTCCTGCTTGAACGGGGTCCAGTGTGATGAACAGTACAGAAA
TGCCAACAACAAATAGAATAACTCATGGAAATGCTTTACCTCTTCTCGTC
TGTTGCTCTTCTCCTGATGTCTGAGACTACATAGCGGAGGATCGGAAAAA
GGCAGCATGTTGCCTCTGCGCGTTCATCCGTCCACCTTGATCGGGCTGGA
AACGAATTACGATCAAGAAAAAGTGCCAAATGGCTGAACATGCGTCACCT
GGGCTTCAGTCAACCTCCATACCGTTCCATTTCCCATCTATCAGGCAAAT
GTTTACTTCTGCTCGGCAAACTTCCTTCCAACCCGATTCCCCTCCTCCCA
TTTGTTTGCTCCATTTCTTAGCCCCTGCAATCCCGGGATAGCGTTGCTTC
AACGAGTTGGCGACTGCGAGCGAGGGAGCCGTGTCTAGCTTGGGGAGACT
GGGACGATGCATTCTTGAAGATTTTCTTGACAGAGGAGGTAAGTGAAGTT
TGAACTTTGAAGATTTGCCGCTATCATTCAAATATTTACGCTTAAAAAAA
AACAGCAACCCACATTCCCACAAAGCGGTTGACGAGCAGAGGTGAGTGAG
TGACGTGATGAAATGCGTGATAGTCATCCTCTTGGTTCATAAGTTACCGT
TGGCATCGCCCGTGATCAACTCTATGTGATACGAAAAAAGGCTCTCGAGC
CGACCCCAGTTGTCCCTACTCGCATTAGGCTCTCTGGGGCAAGCAACAAC
GTATCAGCTGTGTCGTGTTTTAATGATGGAGGTGTTTTGCGTGCAGTAGA
CATTCTTTGCAGCGGAATGGATGTAGTGGCACTGAAGTCGCCCCCCGCCG
CGCTTGTCGGGATGCGAGGCCATTGGTGTAGCGACTACGACGGTGTGCGT
TTACATCACAATACGAGTACATGATTACAGCCCATCCTTGGCCACTTAGC
GAGGGGAGAGACTATTGTGCGTGTGGGATTTCCGCAAAGTTTGAGTCGAT
AAAGCTGTTGGCTCACTGAAAAAAGCAGCTCAAATAACCACAACGGCGGG
CATGGTCAGGTTTAGCCCTGTAGATAGAACAACCTGAGTGATACGCGTGT
TTGGTTCATCTTTCTATGGACGGCTTTCTGTCATTTTCTCCCTCCGCACA
GGCCCGTACGTCGAGGCACCCTGTGAAATGGCGGCGGCAGGTGGAGGAGT
CCTACCACCGAGCGGCGTTGCCAACGCTGGCCCGGCAGTGGAACGTGCCA
TTTCTGAGCAAGGTGAGCGGTTCCGTGGATGCATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2618336..2621671+

>mRNA_Ecto-sp6_S_contig10.669.1 ID=mRNA_Ecto-sp6_S_contig10.669.1|Name=mRNA_Ecto-sp6_S_contig10.669.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1269bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2618336..2621671+ (Ectocarpus species6 EcLAC_371)
ATGCATCTTGGCCCGGAGGATCTTGCAATCGCAGCACCAGCCGCATTTTT
CCCGTTGTTCGGAGATCTCAACAACCCGTCCGCCAGCATGGATGCGGTGG
ATCCAATCTTTGCTCTGGTAGCGGTGAACCCGCTTCTTGCTGCTGTGGTC
CTTCCTGTGTACTTCGCCCTCTCAGTCTGGAGCACGCACCGAGTGGTAGA
TTTTCTGCTCACCTGGAGCGCCACGCAGACTGCCAAGAGGTGCGACCGCT
GGGCACAAGAGTGCGAAGCCACGCCGGCCTCCTCCTGGTGGCAGCGCCGT
GTCGAACCGTTCATTTTTCCTTCACAGAAACACCGGTCGAGGTTCTGGAA
AGATGTGGAGAAGTTCGAGGCTTGCCCAAAGTACGTGCAAGAACTCCGTC
TCATCGCCACACCTGCGACCTCCGGCGGGGATGCCACGCCTACGCCTGCT
CGTGCGTTCAGTTCGATCACCAACGAGCACCACAACGGCAAGGGAGATTC
CCGCCGTTGTTCCGTTCTTCTCGGGACCATCAGGAAAGGGACCGCAAGGG
CGTGGAGAGAAATTCGCGCTTCCGCCAAGCGTGTGGGCGCCGTTGCGAAG
TGCGCGTGGAGCGAGACAAGGGAAAAGGTTTACTTCGCCGTGCTCAAGAA
AAATGGCATCGAGCGAAAAGTCGGCGGCAGCAGCTGCAGCGTTGTCGGTG
GGCACTCACCCGCCCAGCCCCGCAAGGCTCCCAGCGACGAAGACAGGGTT
CTGGCCGCACATAGAGCCCTACGTGGGTCCGACACAACGGGAGCTGTGCG
GCTGGCGTTCGGCCTCAACACGGTGTTTTTCGTAGTCGCGGGTCTCCGGT
TCTATCTGCGAAAATCCAGAGGGGGGCGTTTGCGTTCCCGTGAATGGCAT
CGGCATTGGCGGCGGTGGCAACAGCGGGGGAACGGTGGCAACCGCACGAG
GGTCGTGGTTCATGGAGATGCAGACAACAACAACAACAGCAGCGGCGGCA
GCACAGCGGGAAACTCGCCCCTGCAATCCCGGGATAGCGTTGCTTCAACG
AGTTGGCGACTGCGAGCGAGGGAGCCGTGTCTAGCTTGGGGAGACTGGGA
CGATGCATTCTTGAAGATTTTCTTGACAGAGGAGGCCCGTACGTCGAGGC
ACCCTGTGAAATGGCGGCGGCAGGTGGAGGAGTCCTACCACCGAGCGGCG
TTGCCAACGCTGGCCCGGCAGTGGAACGTGCCATTTCTGAGCAAGGTGAG
CGGTTCCGTGGATGCATGA
back to top