mRNA_Ecto-sp6_S_contig10.657.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.657.1
Unique NamemRNA_Ecto-sp6_S_contig10.657.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.657.1 vs. uniprot
Match: D7G8W0_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W0_ECTSI)

HSP 1 Score: 566 bits (1460), Expect = 5.090e-203
Identity = 294/301 (97.67%), Postives = 299/301 (99.34%), Query Frame = 1 
Query:   94 MTSADVFGDLTVQVLRGINLQNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHESFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATEWGFPGIGGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIVYGGSAAAVSSAVGGGASMTLLVLAVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRVWMPWLFWAMCKSPLVHKALLQPPPHSPSGTQQ 996
            M SADVFGDLTVQVLRGINLQNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHE+FIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATEWGFPG+GGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKI+YGGSAAAVSSAVGGGASMTLL LAVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRVWMPWLFWAMCKSP++HKALLQPPPHSPSGTQQ
Sbjct:    1 MASADVFGDLTVQVLRGINLQNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHETFIFRNVASTDALQISLMEKEGSREGVVSVRGGVRATEWGFPGVGGGERVLEVTMPCTTDTTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVDKVMNVLFKPVAMAEGVAKRLTKAQKIIYGGSAAAVSSAVGGGASMTLLALAVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRVWMPWLFWAMCKSPILHKALLQPPPHSPSGTQQ 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8W0_ECTSI5.090e-20397.67C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2450002..2455981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1001
Hectar predicted targeting categoryother localisation
Exons9
Cds size999
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.657.1prot_Ecto-sp6_S_contig10.657.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2450002..2455981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348717.3518927-CDS-Ecto-sp6_S_contig10:2450001..24500491682348717.3518927-CDS-Ecto-sp6_S_contig10:2450001..2450049Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2450002..2450049 -
1682348717.3618975-CDS-Ecto-sp6_S_contig10:2450642..24507861682348717.3618975-CDS-Ecto-sp6_S_contig10:2450642..2450786Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2450643..2450786 -
1682348717.371858-CDS-Ecto-sp6_S_contig10:2451581..24518121682348717.371858-CDS-Ecto-sp6_S_contig10:2451581..2451812Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2451582..2451812 -
1682348717.3790343-CDS-Ecto-sp6_S_contig10:2452060..24521291682348717.3790343-CDS-Ecto-sp6_S_contig10:2452060..2452129Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2452061..2452129 -
1682348717.3862128-CDS-Ecto-sp6_S_contig10:2452832..24529131682348717.3862128-CDS-Ecto-sp6_S_contig10:2452832..2452913Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2452833..2452913 -
1682348717.3932693-CDS-Ecto-sp6_S_contig10:2453660..24537871682348717.3932693-CDS-Ecto-sp6_S_contig10:2453660..2453787Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2453661..2453787 -
1682348717.4004455-CDS-Ecto-sp6_S_contig10:2454622..24546811682348717.4004455-CDS-Ecto-sp6_S_contig10:2454622..2454681Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2454623..2454681 -
1682348717.407676-CDS-Ecto-sp6_S_contig10:2455059..24551431682348717.407676-CDS-Ecto-sp6_S_contig10:2455059..2455143Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2455060..2455143 -
1682348717.4148424-CDS-Ecto-sp6_S_contig10:2455825..24559811682348717.4148424-CDS-Ecto-sp6_S_contig10:2455825..2455981Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2455826..2455981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.657.1

>prot_Ecto-sp6_S_contig10.657.1 ID=prot_Ecto-sp6_S_contig10.657.1|Name=mRNA_Ecto-sp6_S_contig10.657.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=333bp
QEELLATSDSCCHWSHWFSGGSRNKTHTIHIMTSADVFGDLTVQVLRGIN
LQNLKAFGTCNPYVLLKMTSSPETKTTGVRESDANPSWHESFIFRNVAST
DALQISLMEKEGSREGVVSVRGGVRATEWGFPGIGGGERVLEVTMPCTTD
TTGVPNMGTVVLKLQYRAQLKFRAPFGVIKTAAAKTAILTDKAKIDVVVD
KVMNVLFKPVAMAEGVAKRLTKAQKIVYGGSAAAVSSAVGGGASMTLLVL
AVPVLFMALLFLPLTLMGGFFLAVAMLVIMPCVLALGWVVLCSRPVQCRV
WMPWLFWAMCKSPLVHKALLQPPPHSPSGTQQ*
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mRNA from alignment at Ecto-sp6_S_contig10:2450002..2455981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.657.1 ID=mRNA_Ecto-sp6_S_contig10.657.1|Name=mRNA_Ecto-sp6_S_contig10.657.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5980bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2450002..2455981- (Ectocarpus species6 EcLAC_371)
CAAGAAGAGCTCTTGGCTACTTCTGACAGCTGCTGCCATTGGTCTCATTG
GTTTTCAGGAGGATCGCGCAACAAGACTCACACCATACACATCATGACTT
CTGCCGACGTGTTCGGAGATCTGACGGTGCAGGTGTTGAGAGGGATAAAC
CTCCAGGTGAGCAATGCATGTTGTTTCTCACGTACTGACTAGCCAAGGCG
TCGCCATAGGACCGCCACCACTTACCTTCTCAATGATATGTAGTCGTTGG
ACGTCTTGCAAAGAAGAGGACCCCCCTCGCTCTGGGCAGAATTCCTTCCC
TTATTCCGAGGAGAGAGGCGGAACGTGCGTGTCGATACGCCAGGAGGGTG
AAGTTCAACGTCCCACACACACAAAAAAAAAAATCATGTGTGCTGTCGGG
AGTACCTATCTAGATTGCTTGGTTGTAGATTTGTTCACCTACAGTAGTCA
AGATTGCTCCAGGGAGATAGATCCGTCAGAGTCCCTTGCGCCGGTGCAAT
GCTGGGACCCCCAATGAGCTGTCACGATGCCATCGGGTTGTAGAACTTCC
GCTCTTGATCTAAGCTTGCTCAACGTTCAAACTCCAAGACACGATACGAT
ACGTGATGGTGACAATGACCCGCCATGATTTACAAATTTGGCTCACGAAA
CGTGTTAATTGCACCCCTCGTTTTTTCCAGCACCCAACCATACATCCGCT
CGCCTGTGCGTAGTGTGCCACACCCAATAGTCGTTACCACTATTGCATAC
AACCGAGTTGTCTGTCGCCCGGTCTCTTGTTTTTCTAAGCCCTCGAGGTA
TTCTGTTGTTGGCTCTTGCTGTTTGCTGCGGCCGTTAGAACCTCAAGGCG
TTCGGTACCTGCAACCCTTACGTGCTGTTGAAGATGACGTCATCTCCCGA
AACCAAGACCACTGGTGTACGGGTACGTGCGGGAACGTTTCGATGATGTT
ATGATCGGACATGACCCATTGGTTGTACGATTTTGGTTCGACGTTTTGTT
TTCTTCAATATATCTGTGCTGCCTGTGTCTGTTAGATCGGTGGGCTTTTC
TATGTTTTCGCTTATTGTTGGATCTCATCTTGATTATTACTATTAATGGT
GTTGTTCCGCTATCTTGATGTGGTTGTGGCTGTATTTTGGGCAAGCCGTC
TCGCCGCATCTTGCTCGTTCCACGCCGTTGTTAAAATATTCACTCTTACT
CTCCCTCCTGATGTTTCCTTCTGCCCCCCCCCCCCAATTCGCTTGTTTTG
TTTTTGCGTGTGTTCGTCTACGATGTTGTTTGTTTGATAAAACCTTACAG
GAAAGCGACGCGAATCCCAGCTGGCACGAGAGTTTCATATTCCGCAACGT
TGCCAGCACGTGAGAGCAAAAGAAACAACTGCGTGGCCACAGTACATAGC
CCTTGTTGACACCCCGGAGAAAAGCATGCATGCATGCACACAAACATTTG
AAAAAGGCGACAGAGGCGGGGGAGGTTGATAACGGACTTTTTTTTTCGGG
GGGTGGGTGTACCCTCCCGTGACAGGGAGAGAGAGCCATTGAGCTGAATC
TCCACTGCGATACGGGGCTTAGAGAGAGAAGCGGGGGGACCTCTGTATAG
TACCGTGTTCCTAGATGTTCGGAACCTACATCGCTCGCCTCACAGCGTGT
GGACCAGCTCATAAGAAACATTTTGAACGGAAATGGAGCGCAAGAGATTG
GGCTCAGCCACTAGCGTCACCCTAAGTCCTGTATAGCGGCTTAGAATAGC
CCGACCTCATGGTTGAGAAACTTTGCTTAGGTTGCAAGCGGGCCTGCACT
GTAGCCGAAAACGAGGCAATCTTGTCCACCTGTTGAGACTTTTTGAGACC
CCTTGTCGGGCTAGGCGTTTGGACGAGTTTTTCCTCTGCTTTTTTGTGTC
GTCGACCTTTGCTTGTGGACCCATTATCAGGCTGGGGGGTTTGACGAAGT
ATTTTCCTCTGGATTTTGGCGCGAGACTGCTGCCAATATAACTCTCCACA
CACACCTCCATCCAACAAAGATAGAGACGAAAGTTAAAAACTCGAAAACG
TAGTCTTGCGCCCACACCCCCACCCTAACTCCCCCGCGTTTACAAATCAA
TGCCTACTTTAAAGACTCTAACCGACCGACCCCTGCTGTGCTTCTTTTGG
GATATCAACCATCCGGCCTTGGCCGGCATGTTGTTGCTGCACAGCGATGC
TCTCCAGATAAGCCTGATGGAAAAGGAGGGGTCTAGAGAAGGAGTGGTGA
GCGTGAGGGGGGGGGTGCGAGCGACAGAGTGGGGATTTCCAGGGATTGGC
GGCGGGGAAAGGGTGCTGGAGGTGAGCTTTATATGTGTGTTTTTCAAGAA
GGGAAGAGTGTACTCAATATTCGTATCTACATGCTTACCCTACGCACGCC
TATTGTTAGGTGTACTTAGCACTAGTTACGGATCTACGGAGATCTCGGGG
GATTTGGGGGGTTTTGTTCGAAAAGTTCAGACGAGAAGCTGCTATTTGGA
TGCTGCGTACTGCTGTATGATTTGGGAATCGGTGCTACTGTATTTTTCTT
GTTTTGTTTGGGGTACCCTCGATACATTTCCCGTAAACGCGCCGTTTAAC
CCAACCAATCTATTCTTGTTTCTTCTTTTGCGGAGTCTGGACTGCCCGGA
TGGTGCCCTCATTGTACTGTTGGTTGCTTAGTTTCGGCGTTTATGCGTTT
AGTTCCTTTTTCCTTCGCGTGGTCAGTCGTGCCCGCATGATGCATGCAGG
CGTAGTCAGACTCGATACAAATATCTATAAGTGTTTGTTTTCATTCGTTG
AGGTTCGCTGAGCTCTTTCGGGTAAAAAAATGCCACCTGTGTGAGCCGTT
GGCTTGGGAACGTTGCAACCAGCTATGAATGAAGCAGTCAACGCCGGGCT
GGTTCTGCTGCCTGCCTGCTTGTATTTACTTCCATCTTGCGTCACCGGTT
GATGGCACTAGCCGTGATCTCATGGGCCCACTCCGGAGAGACCCCTTTGT
ATCATCTACTATCTAAACTAAACCGGTGTCTTGTGCATTTCCTTTGCTTA
AACCGTCCGTCCGGTCAGGTGACTATGCCATGCACCACTGACACCACGGG
TGTGCCCAACATGGGCACGGTCGTCCTGAAGCTGCAGTACCGCGCTCAGG
TGAGGAGGAAGGCGATGACATGGGGGGGGGAGGGGGGGGAGGGCGTGCTC
TCATGTTTTGCATGCCTTAGCGGTTAGACCATTTACCACGGCGCTCCCAC
AAGACCGATGACCGATGTCCGATCGTTCGCCCAAGGTGGCTCAAAAATGT
TTTCTCCTGCGTATACATGTACATCCTACCGACACCACTTCACGCCGTTT
CAACCCACTTCCGATGTCCCTGTTTGGGGCGTGGGGGGGGCATTGGTCTG
GTGGCTGCCCATTTTTGCTCTATTATGTGCGTTTTTCCTGCTGAATAGGT
ACAAATATTGTTGATTTGTCTCCTCCTCGACTCTTGTCTCAATAGACTAT
TTGTATTCCGCGTCCTTTTATTCTTCCCAGAGAACAAGAGGTATGTAGGG
TACCTTGCTTCTGTTGGCACTGGATGTCTGGTTTAATTCCGACCTGCTTG
CTTGCGGTAGTATTTGCGTGCTTTGGCTTGCTTGCTGGCCACGCCTAAAC
GTTTGTAAGAGAATAGAGAATGTGCCGTTGATTTCATACGAGAGCGTCAT
CTTCCATTTCTTCGTGTACTGTCTTGCCGATTGATGTCATCGATCCTCTC
GACGTTCTGTCCATGCGTCTTTTGTCGAACTATGTATAGAGCACTGACCA
ACTACCACCTTTACTGCTTTTCATTCGCTTCGATTCACATGCTTTCCTGC
AGCTAAAGTTCCGCGCACCGTTTGGAGTGATCAAGACCGCCGCAGCGAAG
ACCGCAATCCTCACCGACAAGGTACAAAAGTATAAAAATGCATCCGTGGT
TCTTGTTCTTGTTCTTGTTCTTGTTCCTGTTCTTATTCTTGTTGGTGTTG
GTGTTGGCGATGGTGATGGTGATGGTGTTGTTGGTGTTGTTATCACTGTC
ATTTCTGTTTGTGTATTGCGTCGTTGTCGTAGTTTGTTCCTCCGGCTTTG
CTGCCGCTATCGTTCTCGTCGCTGTTGGTTTTGCATCCACCCCCTCCCCC
CTGAAACAACAACCTCCAGGCGAAGATCGACGTGGTGGTGGACAAAGTGA
TGAACGTCCTATTCAAGCCCGTTGCCATGGCCGAAGGAGTTGCCAAGCGT
CTCACCAAGGCCCAGAAGATCGTTTACGGGGGAAGCGCGGCGGCGGTTTC
GAGCGCTGTTGGCGGAGGGGCTTCCATGACCTTGCTGGTGTTGGCCGTGC
CGGTGTTGTTCATGGCCCTGCTGTTTCTACCGCTCACTCTCATGGGAGGG
GTAAGTTGGTCATTGATGCCCTCACCTCGCAAAGGTGTGCGTGCATAGAT
GGCGGTCTGGAATAGCATGCTGTTGAGATGAAGGTTAATGGTTTCTACAG
CAAACGACAGCCACACTAACCGATAGTTCGAAGCTTGTGCTTGGCGGTTT
TGAAGCTTGTGCTTGGCGAGCGAAGTTATCACACCCAAGTAAAGCAAAGC
ACCGGGGATGAGCTAATCTCTGAATCATGTAGCTGGGGTGCAGAGCTATT
TAGCATGAGTGGCCGTTACCGTAAGCTACAACCAACCCTTCCACAATATG
TGTGCTCTTCCCATGTTCCGTCAACGATGGGCGTACATAGCCGATGGTAC
GGGGTGATCGGTGTTGGATCCGCCTGTTTCGATGGACACAAAAAGCAGTA
TCTCGCAGCTCGCTTGGTACTTCCGTGCCTCTTTGCGTTCGAGACGTTGC
ATTCAGCCTCGATATGGACTGATTGGTAAGGTGTCAGCTGCTTGTAAGTG
CTGAATTTCTTCCTACTGCTCCACGTCAAGAAGATAGTCCTGCTGTATAT
AATGTACCAGGGATGTGTGTGTTTGAGGCTCGAACTGTTTTTCATCATAC
GGTATGGCATTAGACGGCATGGTATCATCTCGCTGCCAGGGCTATTCCCA
CTGGGTAATACCGTAATATTCGGGATACGAGTTGTTATTTTGTTGCTGCC
TCATCATAGAATTGTGGGAGGGCAACACACCGATGTTTTTTGTTCGGCAA
CACCGGCGTTTTTGTTCACGTTTTGCGCACACTTTGTTTCGGCAGTTTTT
CCTCGCCGTGGCTATGCTGGTCATCATGCCGTGTGTGCTGGCTCTGGGGT
GGGTGGTCCTATGCTCCCGGCCCGTCCAATGCCGCGTGTGGATGCCGTGG
TTGTTCTGGGCCATGTGCAAGTCTCCCCTCGTTCACAAGGTGAGCGCATG
CGGTCGGATATTAACGGGGGTTCGAGGCTTCCTATCGGCTTGAGCTATTA
GCTGTGTTTGTCTAATGTCTACGTTTGGCGTCAACTTTTTGTTGACGGGC
GCTCGCGCTCTCGACCTACAATATACCTGAAGATAGATGTCCAATTCTGC
GTCGCTTACGTACTACTTGTACATGGTTTGCGTTTTTTTGCACGTGATGA
ATGCCGCATGTCTTCTGTCTGCCCGTGAACAAGGATTTTCAAGTTGGGGC
ATGCTATGTATATGTATGTACTGTCGTCTCTAAGAAGCTGCTATATTGTT
AGGTGTTAGTTATCCCTGTTCGCTGTTCGGGAGAGTTTGATGCGTACAGA
ATGTCTGTTTGAATGATTTGCTAATTTCGCTCTCCATGCATCTCTCTCTC
TCCTATTGGTATCTACCATCTTCTACTACTACAGTCCTCCGTTTTTCCAT
ACCGGTTCGTTTCTTTCCTTGCTGGTATTATAGGTGCATGCTTTCGGCGT
GCAAATGCGACGAGCTACTAACTGTTTCTTGTGCCCATCCATGATTCGTT
TCGACCCCCTGCCCACCGCCCGGCTCCGACAGGCCCTGTTGCAGCCCCCG
CCACACTCACCCTCCGGAACGCAGCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2450002..2455981-

>mRNA_Ecto-sp6_S_contig10.657.1 ID=mRNA_Ecto-sp6_S_contig10.657.1|Name=mRNA_Ecto-sp6_S_contig10.657.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2450002..2455981- (Ectocarpus species6 EcLAC_371)
CAAGAAGAGCTCTTGGCTACTTCTGACAGCTGCTGCCATTGGTCTCATTG
GTTTTCAGGAGGATCGCGCAACAAGACTCACACCATACACATCATGACTT
CTGCCGACGTGTTCGGAGATCTGACGGTGCAGGTGTTGAGAGGGATAAAC
CTCCAGAACCTCAAGGCGTTCGGTACCTGCAACCCTTACGTGCTGTTGAA
GATGACGTCATCTCCCGAAACCAAGACCACTGGTGTACGGGAAAGCGACG
CGAATCCCAGCTGGCACGAGAGTTTCATATTCCGCAACGTTGCCAGCACC
GATGCTCTCCAGATAAGCCTGATGGAAAAGGAGGGGTCTAGAGAAGGAGT
GGTGAGCGTGAGGGGGGGGGTGCGAGCGACAGAGTGGGGATTTCCAGGGA
TTGGCGGCGGGGAAAGGGTGCTGGAGGTGACTATGCCATGCACCACTGAC
ACCACGGGTGTGCCCAACATGGGCACGGTCGTCCTGAAGCTGCAGTACCG
CGCTCAGCTAAAGTTCCGCGCACCGTTTGGAGTGATCAAGACCGCCGCAG
CGAAGACCGCAATCCTCACCGACAAGGCGAAGATCGACGTGGTGGTGGAC
AAAGTGATGAACGTCCTATTCAAGCCCGTTGCCATGGCCGAAGGAGTTGC
CAAGCGTCTCACCAAGGCCCAGAAGATCGTTTACGGGGGAAGCGCGGCGG
CGGTTTCGAGCGCTGTTGGCGGAGGGGCTTCCATGACCTTGCTGGTGTTG
GCCGTGCCGGTGTTGTTCATGGCCCTGCTGTTTCTACCGCTCACTCTCAT
GGGAGGGTTTTTCCTCGCCGTGGCTATGCTGGTCATCATGCCGTGTGTGC
TGGCTCTGGGGTGGGTGGTCCTATGCTCCCGGCCCGTCCAATGCCGCGTG
TGGATGCCGTGGTTGTTCTGGGCCATGTGCAAGTCTCCCCTCGTTCACAA
GGCCCTGTTGCAGCCCCCGCCACACTCACCCTCCGGAACGCAGCAATAG
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