mRNA_Ecto-sp6_S_contig10.636.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.636.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE) HSP 1 Score: 895 bits (2313), Expect = 7.350e-310 Identity = 778/1029 (75.61%), Postives = 793/1029 (77.07%), Query Frame = 1
Query: 1 MSAGRRRRVMLESDDEDDAGVGEQGLGEVSVTPHVTPPTAEQTRPSKSRRSMKVIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---QLAERWSKLEEDSDHDLSDGDGDDASGAKRSSLVQLQFHETWGRGSRSSTASRQSRRLVKEPPPSGDEVGDSSDSDDGLGGFIVDSEDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAAPVVAATFANGGGSSRITRKSGRRKSGANACEIDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKPVRRSSRAQKGKEVADEEPGSGKRRKTSAVGSEPESAGPSXXXXXXXXXXXXEEFSMQPAGSKKRGKGTRKDGRTRGRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRGKDKQAGGKSGGKDIKEEAPAAATGRATRTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXXXXXXXXXXXE-----SDGDLDGKKSGDKCARDQDIDEDDSFAVTLKDDDEXXXXXXXXXXIKTVGSKGSAGCAKRSRSEXXXXXXXXKRKGRKRNHRYNEPDXXXXXXXXXXXXXXXXXXXXXXXXAFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLRRLTDRCSACNRSNRTSVIAFLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLGELEGQRPGLGEEGESXXXXXXXFHVGRGRRWRTVGSSGGRYG 3063
MSAGRRRRVMLESDDEDDA V EQG GEVSVTPHV PPT EQ RPSKSRRSMK+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QLAERWSKLEEDSDH+LSDGDG DASGAKRSSLVQLQFHETWGRG+RS TASRQ+ + + P+ G SA A V AATFANGGGSSR TRKSGRRKS ANA D XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +PVRRSSRAQKGK VAD XXXXXXXXXXXXEEFSMQPA SKKRGK TR DGRT GRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX GR K K IKEEAP SMVNYREMLHG GT XXXXXXXXXXXXXXXXX XXXXX SDG+LDGKK G+KCA D+DIDE DSFAVT++D XXXXXXXXXX XXXXXXXX XXXXXX XXXXXXXX AFFSHAAFFNEMEQSEDGG+SSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDL RL DRCSACNRSNRTSVIAFLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKK+KKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYG LDLGELEGQ P XXXXXXX VGRGRRWRTVGSS GRYG
Sbjct: 1 MSAGRRRRVMLESDDEDDAAVREQGSGEVSVTPHVLPPTTEQARPSKSRRSMKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAERWSKLEEDSDHELSDGDGGDASGAKRSSLVQLQFHETWGRGARSRTASRQA---ISQGAPAVRRRGKQK----------------------------------------------SAPASVGAATFANGGGSSRNTRKSGRRKSVANASGTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVRRSSRAQKGKAVADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEFSMQPASSKKRGKDTRIDGRTMGRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXVPVKSVGNGKKSTKENAGREKXXXXXXXXXXKGIKEEAPXXXXXXXXXXXXXXSMVNYREMLHGNGTXXXXXXXXXXXXXXXXXXXGWDXXXXXXXXXXXSDGELDGKKPGNKCATDEDIDEXDSFAVTIQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXNFIDXXXXXXXXGEDGGDAFFSHAAFFNEMEQSEDGGVSSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLNDRCSACNRSNRTSVIAFLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKEKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGGLDLGELEGQGPXXXXXXXXXXXXXXXXDVGRGRRWRTVGSSSGRYG 977
BLAST of mRNA_Ecto-sp6_S_contig10.636.1 vs. uniprot
Match: D7G8T9_ECTSI (DUF4211 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T9_ECTSI) HSP 1 Score: 723 bits (1866), Expect = 5.370e-245 Identity = 700/813 (86.10%), Postives = 706/813 (86.84%), Query Frame = 1
Query: 28 MLESDDEDDAGVGEQGLGEVSVTPHVTPPTAEQTRPSKSRRSMKVIAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQLAERWSKLEEDSDHDLSDGDGDDASGAKRSSLVQLQFHETWGRGSRSSTASRQSRRLVKEPPPSGDEVGDSSDSDDGLGGFIVDSEDEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAAAPVVAATFANGGGSSRITRKSGRRKSGANACEIDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDKPVRRSSRAQKGKEVADEEPGSGKRRKTSAVGSEPESAGPSXXXXXXXXXXXXEEFSMQPAGSKKRGKGTRKDGRTRGRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGRGKDKQAGGKSGGKDIKEEAPAAATGRATRTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXXXXXXXXXXXESDGDLDGKKSGDKCARDQDIDEDDSFAVTLKDDDEXXXXXXXXXXIKTVGSKGSAGCAKRSRSEXXXXXXXXKRKGRKRNHRYNEPDXXXXXXXXXXXXXXXXXXXXXXXXAFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLRRLTDRCSACNRSNRTSVIAFLSGSEYDPNRV 2466
MLESDDEDDAGVGEQGLGEVSVTPHVTPPTAEQTRPSKSRRSMKVIA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QLAERWSKLEEDSDHDLSDGDGDDASGAKRSSLVQLQFHETWGRGSRS TASR RLVKEPPPSGDEVGDS XXXXXXXXXXXXXXXXXXXXXXXXXXXXX TRKSGRRKSGANA EIDD XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DKPVRRSSR QKGK VAD++PGSGKRRKTSAVGSEPESAGPSXXXXXXXXXXXXEEFSMQPAGSKKRGKGTRKDG TRGRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VGRGKDK+ GGKSGGK IKEEAPAAATGRATRTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXX ESDG+LDGKKSGDKCARD+DIDEDDSFAVTLKDD+EXXXXXXXXXX XXXXXXXX R NHRYNEPD XXXXXXXXXXXXX AFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDL RLTDRCSACNRSNRTSVIAFLSGSEYDPNRV
Sbjct: 1 MLESDDEDDAGVGEQGLGEVSVTPHVTPPTAEQTRPSKSRRSMKVIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLAERWSKLEEDSDHDLSDGDGDDASGAKRSSLVQLQFHETWGRGSRSRTASR---RLVKEPPPSGDEVGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTRKSGRRKSGANASEIDDXXXXXXXXSRADGHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPVRRSSRLQKGKGVADKDPGSGKRRKTSAVGSEPESAGPSXXXXXXXXXXXXEEFSMQPAGSKKRGKGTRKDGGTRGRSGEEVVDVEEASPARVGTRGAGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-VGRGKDKKVGGKSGGKGIKEEAPAAATGRATRTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXXSGWDNDDEDESDGELDGKKSGDKCARDEDIDEDDSFAVTLKDDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--NHRYNEPDDGDEDNFIDXXXXXXXXXXXXXD-AFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLTDRCSACNRSNRTSVIAFLSGSEYDPNRV 806
BLAST of mRNA_Ecto-sp6_S_contig10.636.1 vs. uniprot
Match: D7G8T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T8_ECTSI) HSP 1 Score: 380 bits (975), Expect = 1.570e-120 Identity = 192/201 (95.52%), Postives = 194/201 (96.52%), Query Frame = 1
Query: 2461 RVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPQTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLGELEGQRPGLGEEGESXXXXXXXFHVGRGRRWRTVGSSGGRYG 3063
+VWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGP TSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLG+LEGQR GLG XXXXXXXFHVGRGRRWRTVGSSGGRYG
Sbjct: 58 KVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFRGEGGPHTSKKKKKRCLNFSENEFESLSALLRKADDLNGVKWGGRAGVRGGHGKTFLEMGAASSILDWLSGEAQQGQYGDLDLGDLEGQRAGLGXX-XXXXXXXXXFHVGRGRRWRTVGSSGGRYG 257
BLAST of mRNA_Ecto-sp6_S_contig10.636.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 5.510e-14 Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 1
Query: 2134 YVEYIAKATQGDGAGEAFMKKYVAQPRIPEHA--RYGKAKEMVEKKLRISGESLC--GSWRQDFRDTIMRYPHYGYHH------------------VDGDLRRLTDRCSACNRSNRTSVIA-FLSGSEYDPNRVWDGLRWDKHLPEHWDDPDAAAVAKQEAKATHYLGDTCKHKSHLFHSLTHYKLYLVSKVSAKIRGDSGLEPENFR 2688
Y+E++AKA QG G G AFM+K+ ++ HA Y KA + E ++ ES+ GSW Q+F + YP G+H +D + D C+AC+R R ++ +L+GS +KQ+ + LG C++KSHL+H+L HYKLYLV KV + +G+ PE+ R
Sbjct: 940 YLEFLAKAVQGGGKGAAFMEKFDSK----RHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEIDDEEEGQDIDWESLGRPDPCAACHRRQRENMSTMYLAGSR------------------------GGYKSKQKVRERLGLGGRCRYKSHLYHTLLHYKLYLVCKVREHM-DTTGVGPEDLR 1118 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.636.1 >prot_Ecto-sp6_S_contig10.636.1 ID=prot_Ecto-sp6_S_contig10.636.1|Name=mRNA_Ecto-sp6_S_contig10.636.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=1022bp MSAGRRRRVMLESDDEDDAGVGEQGLGEVSVTPHVTPPTAEQTRPSKSRRback to top mRNA from alignment at Ecto-sp6_S_contig10:2223473..2234487- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.636.1 ID=mRNA_Ecto-sp6_S_contig10.636.1|Name=mRNA_Ecto-sp6_S_contig10.636.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=11015bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2223473..2234487- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2223473..2234487- >mRNA_Ecto-sp6_S_contig10.636.1 ID=mRNA_Ecto-sp6_S_contig10.636.1|Name=mRNA_Ecto-sp6_S_contig10.636.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=3066bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2223473..2234487- (Ectocarpus species6 EcLAC_371)back to top |