mRNA_Ecto-sp6_S_contig10.626.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.626.1
Unique NamemRNA_Ecto-sp6_S_contig10.626.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Match: D7FPB1_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPB1_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 1.930e-59
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 2 
Query:   80 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVAFPGGKKAKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKVRLCIGKLPAGAGPFTFTQ 400
            MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADV FPGGKK KANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKK+RLCIGKLPAGAGPFTFTQ
Sbjct:    1 MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVTFPGGKKTKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKIRLCIGKLPAGAGPFTFTQ 107
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BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Match: A0A835ZB30_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB30_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.510e-24
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 2 
Query:  161 SVSRPTNSLSMADVAFPGGKKAKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKVRLCIGKLPAGAGPFTFTQ 400
            SV R  +SL MA   FPGGKKA+   G  LK V  KA Y A YGCEEGKCG+CEHKV GKKVRLCIGK+P G GP TFTQ
Sbjct:   28 SVVRAPSSLYMAQCIFPGGKKAEGKPGEALKAVVAKAKYDAPYGCEEGKCGSCEHKVGGKKVRLCIGKVPPGNGPHTFTQ 107
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BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Match: A0A7R9UCS5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCS5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.620e-15
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2 
Query:  131 AFMAPS-VTVRSVSRPTNSLSM-ADVAFPGGKKAKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKVRLCIGKLPAGAGPF 388
            AF+ P  +  R+ ++    +SM  +V FPGGKK  A  G P K VA +AG+K  YGC++G CG CE KVNGKKVR C+ K+PA   P 
Sbjct:   42 AFLPPKGLATRAPAQQRGQMSMNIEVVFPGGKKTTAKAGEPFKNVAARAGFKPTYGCKQGSCGACEIKVNGKKVRPCVAKVPASNKPL 129
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BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Match: A0A4D9CYU4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYU4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.640e-13
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:  197 DVAFPGGKKAKANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHK-VNGKKVRLCIGKLPAGAGPFTF 394
            +V +PG KK KA  G  LK VA +A Y   YGCEEGKCG+CEHK  +GKK R+CI K+P  AGP T 
Sbjct:   40 EVIWPGNKKVKAKPGEALKAVAARARYTPNYGCEEGKCGSCEHKGSDGKKYRVCITKVPKIAGPLTL 106
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BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Match: A0A2D5MUZ7_9BACT (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MUZ7_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.070e-5
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 2 
Query:  245 PLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKVRLCIGKLPA 373
            PLK + + AG    + CE GKCGTCE++V+G+  RLC   +PA
Sbjct:   45 PLKKIVKAAGAPVKFNCENGKCGTCENRVDGRLTRLCTATVPA 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPB1_ECTSI1.930e-5997.202Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835ZB30_9STRA2.510e-2467.502Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7R9UCS5_9STRA1.620e-1548.86Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CYU4_9STRA1.640e-1358.212Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A2D5MUZ7_9BACT2.070e-548.842Fe-2S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:2108910..2114465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2172
Hectar predicted targeting categorychloroplast
Exons5
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-15_004070.1
Cds size324
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.626.1prot_Ecto-sp6_S_contig10.626.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 2108989..2112685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.080413-UTR-Ecto-sp6_S_contig10:2108909..21089881682348714.080413-UTR-Ecto-sp6_S_contig10:2108909..2108988Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2108910..2108988 +
1682348714.1166549-UTR-Ecto-sp6_S_contig10:2112685..21132241682348714.1166549-UTR-Ecto-sp6_S_contig10:2112685..2113224Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2112686..2113224 +
1682348714.1238332-UTR-Ecto-sp6_S_contig10:2113235..21144651682348714.1238332-UTR-Ecto-sp6_S_contig10:2113235..2114465Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 2113236..2114465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348714.0883322-CDS-Ecto-sp6_S_contig10:2108988..21091021682348714.0883322-CDS-Ecto-sp6_S_contig10:2108988..2109102Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2108989..2109102 +
1682348714.0955024-CDS-Ecto-sp6_S_contig10:2110308..21104431682348714.0955024-CDS-Ecto-sp6_S_contig10:2110308..2110443Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2110309..2110443 +
1682348714.1025085-CDS-Ecto-sp6_S_contig10:2112156..21122191682348714.1025085-CDS-Ecto-sp6_S_contig10:2112156..2112219Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2112157..2112219 +
1682348714.1095135-CDS-Ecto-sp6_S_contig10:2112673..21126851682348714.1095135-CDS-Ecto-sp6_S_contig10:2112673..2112685Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 2112674..2112685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.626.1

>prot_Ecto-sp6_S_contig10.626.1 ID=prot_Ecto-sp6_S_contig10.626.1|Name=mRNA_Ecto-sp6_S_contig10.626.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
MFSRVVSLMVCMLAGAAAFMAPSVTVRSVSRPTNSLSMADVAFPGGKKAK
ANGGAPLKTVAQKAGYKAAYGCEEGKCGTCEHKVNGKKVRLCIGKLPAGA
GPFTFTQ*
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mRNA from alignment at Ecto-sp6_S_contig10:2108910..2114465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.626.1 ID=mRNA_Ecto-sp6_S_contig10.626.1|Name=mRNA_Ecto-sp6_S_contig10.626.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5556bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2108910..2114465+ (Ectocarpus species6 EcLAC_371)
CCTGACCAACACACCGCCCGATTCCGCAACAACACCTTACGCTGTCTTCT
CTACTCTTCGTCTCTCCCACGCTCTAAACATGTTCTCCCGCGTAGTCTCC
CTCATGGTGTGCATGCTGGCTGGCGCCGCCGCTTTCATGGCGCCATCGGT
GACCGTGCGATCTGTGTCGCGACCGACAAACAGCCTGTCCATGGTGAGTC
CGTTTGCTCCTACTCTTGTGACATGATTCAGCATCCGCACGTGCGTACAT
GTAGCTCGGGATCGATGAAACACCCCTCCCTCAACCACCACACGCAGTTG
TGCCAATCGCCGTGCTGCACACCAACAGACCTACAGTCTCCACCTTTGTT
GCTCGATGCGCTATTGGAAATTCATCAAGGCTGAGGAAGCTGCTGTTGTG
CAGCACCCTCAAACCCGCAACGCATGTGAAAACAAAACAAACACGCGGGT
TCGTCATGATAAGCCCGAGGAAGAGGAACACGAACCTATTTGGCGCAGAG
TTGCGGATATTGGCCAGGGAAGCAGTTGCCCTGTTCGTGCGCaATAGTAT
TGCGGCCTCTGTCTCAAGCTCTACTCAAGTATCGCACCAACAGTCGGTTA
CGCACACATCCGTGTGTGGGCTGTGCAGATGTACAGCAGCATTTGAAGAC
AGATCGAATGTTCACCTGGCAATTGAACGTTCACCTGACGCACACAACAT
GTTGCAGCTTATGCAGCTACCAATCCAGCTGAGAGTGTTGCCGCCGGTCC
TTGTGGCACGAGGGCATGGCTGCGAGTGCATTGCGGGCCGCTAGTATTAA
CGTACGTAAAACCTGTTCGTCTCAGCAATTCAGCAGGGCCAGCGACACTA
GTCTAGCTGCTGGCTGTAACAGGTCGTCATCACCCACCCCAACAAAAAAC
GTGGTCGGAGGAACCATCTTGACACTGCTGCAGATTATGCATCATTTTCG
AATGTGGGTTGTATGCGAACGGAATGTATAGACTATAGAGAGCGTCAAAC
GATTGCGGTGCATGGGTACCCGTGTAACCAGACTGTGCGTTCGTCACGGT
CTGATCCTGGCGCATGTCGCCGTCATGGAATTGGGTAGGGTCGTCATGTC
GTCCCGATGTACGTACGATCCCAAAAAAGTAAAAAAGTCCATCCTGCATG
TACCTCCTTGTTTGCATGTGAAAAGGTACGGATTAGAATGTAATGGACTT
CACTCCTAGGTATGGAGGATGCACTAGACGAAGATGGACACGAGGCGAGC
CGGGAAATTTTTTCCTTGCAGACCCTAACCCGCAACTTCGCCGCGGGTCT
TACCTCCTCGAGTGTGTTAGCTTACTTAACAAACCTGCGTCAACCATGTA
TCGTCCTCACGATAACCCGCCGACCCTGAACACCAACACCGACACCCAGG
CGGACGTTGCCTTCCCGGGAGGAAAGAAGGCCAAGGCCAACGGAGGCGCC
CCCCTGAAGACGGTGGCGCAGAAGGCGGGCTACAAGGCAGCGTACGGCTG
TGAGGAGGGCAAGTGCGGGACGTGCGAGCACAAGGTGACGCCTCGACCAA
CACTGCCTGTCTCGCACGCGTGGTGTGGGCTTTTGCAACCCATCCCCTTC
GACTGTCGTTATGTCTCGAACGGGAAGCCATTTGATTGTACTATACTACA
AGGTTTTGGGCGCGGCGCGCCCCCGCTTTATTTGAAGCGATTCCAAGGCA
ACGTTTTCTCTGAAAGTGGGTGTAGGATGTTGTTAAAATGAAGTTAGGCA
CCGATGGCAGTTGAAGTTTCCGTGAAGGTGGAGTTCCCATGATGGAGGTT
CGTGTGTGATTTAAGGAGCACACAACACCGTTGCCGGAATCGGAACAAAC
AACAGACCATTCCGACGCGAGAGCGGTGAAGAGAGAAAAGCAAAAATTTA
CAGCAACGTGGATACACACACACACACACACACACACCGAGAGGAGAGAG
AGAGAGAATACGGTACCAAGGTGATAGGAGGTGAGTGCATACCGTGTGGT
GTTAGAAGAAAAAAAATGTACAGCAGTAGCACACGGAATCGGAACAAACA
ACACACCATTCCGACGCGAGAGCGGTAAAGAGAGAAGGCGAAAATGAAAA
GAGAATGTGGATAGACAGACCGTCAGAGACATAGAGAGACGGAGGAACGG
AGGAGAAGGAGGCACACACAGAGAGGGCTGTACTTTGAGTGGAATGCGTG
GTATGATGGTACAGAGCGGGGTGACAGCAGCAGGCGAGAGAGATGAAAGC
GGAAGATAAAAGTGGAAAGTCCACCGTAGTGCCAAATTTCCAAAGGAAAT
GCTGCTCTGTGAGAGCCGGAGAAGACCGGAATAGAGCGCTCACAGAAGCC
GAAAGAAGCGAAATGAAGCGTTCTCAGAGAAAACTTAAATTGTAACAAGA
CTATACTTTTCTGCAAAAAATGAGCTGTATCTGCTGCCATCATCGCGGCA
ATCGCATGGATATCGAGATGCTATCGCCTGTGCGACAATGGTGTGCGTTT
TATGTGTCGTCCCATCTATCCTTGCCACGAGCACATGACACATTTACGCA
TGAACGAGAGCCTCCGCGGCGGCGGGGAGGGCAAGTGCCTGTTCTGCAAG
CACGAAGTGACAGCGGCAGTACGGCTAGTGTAGGGCTTGACCACTGCATC
GAGTTAGGCGTTACAGAGGAAGAGGCGTCTGCTGTCGCTGCTGCGATATC
ACTGCAGTCGTACGAACGTCGAGAGATTTTTAGAAGCCGAAATCAGACCA
TTAGACTAGTCTTATGAAGTTTCCACCCTTGTAAAATCACGAAGATTCAA
AGCGCACAAGGCGGTACCACTATTACTCTGCGGTTACGGAGAGGGCGAGC
GAGTGCCTGTCCTGCGAGCCCCAGGCGGCTGAGTACCTCACGGAGATAGT
CGACCTAGCTTAGGGGCACACAGGTGCATAGGCTTCTTGGTACATCACCC
CCGCTGCGGCGTCTTCGACGCCCGATCTCTTTGGGAAGGGAGTATGCCCC
AAAACGTGCGGTAGATATACCGGACGCCTTTGGAGAATACGTACATGGTC
AGCTTGACAGGAAGGAGCACGGGCACATCGGTGGTCAAGCGGCCGAGGGA
GAACAAAAAATTGATCCGAGCTGTCCTCCCATATGTTTTTTTGCCGTCCT
ATGGGTGCTTGGAGGCATAACCTCCTGTGTACCCCTGCGGTCTGACCTGA
AAAATCCTGCCGTTTGTTGTTTTGGTGTGCCGCGTATGTCTTGGCAGGTG
AACGGCAAAAAGGTCAGGCTGTGCATCGGCAAGCTTCCCGCCGGCGCCGG
CCCATTCACGGTGAGCGACCCCCCCCCTGCGCTCTTGGAGGCGAGGTTCT
GGTTCCTTCGTAGCCTCTGTCAAATTCGTGTTCGTCATTCCCGACTGACG
AGTTGCGAAAATTTACCCACAGATTCGAGAGATGATCAGTTATGGAGAGG
GAGCAGGAAAGCCTCAAGAAGGGAAGGGTTTACAGCAGTATCGTAGCCAT
CGAGAGCCCACGCTTCAAGGACAGCCCCCTAGAATGTTGACGTCGCGGAG
GGGCGCAAATCTTTCACGCCGGTTTTATTTAGGATGTGTCAAAGATTGGC
GACATTATTGCGGCCATGCATGGTGTATGACCACATTATCTCCCCTGGTG
ACGTACGCTATCCCGGGATTCACTGTGTTGACCCCCCCCTTCCCACTCCG
TATTCCCGTTGTGTGGACCTTGCACGCATGTTTTGCTTGGTTGTTTCGTG
CGGGTTCTGAGCAGTTCACCCAGTAAATAGAGGATAAAGGGGTCGGGGCC
GACACAGGGACAGGGAATGGCGGCGCATCAACGCCTCATCTACATCACAA
AGGGGACAGGGGATCCAGTGACTGGGACCCCCCACCTGCATCACGGAGAA
AGACACAGGGACAGGGGATGGTGGCGCATGGACCCGCCTCATCCATATCA
CAACTATCACAGTCATCACAGTTACAGCTAtgTTTTTTTTTTTTTGTCAG
TTTTCGGATCAAAACCTCGTGGAGGTGTATACCGTCTGGTAGGCACGGTG
ACCACCCGCGGCGGATCGATGTGGGACAAGCGCGAGAAGATATCGTCAAC
AGGATGAGGCGCTAGAAGTAAGGCCATGGTTTCGGCGCTCGGGGCGCGAG
GATGCCTTTGCCTCTAGACTAACAATAGAGCACTCACGACCGACGTGATA
CGTAAGCAGTTGGGACGTTGCAGTCGGGGTCTTCGCCGCAAACGCTTTCT
ACAAGCGCTTTGGATGAAGGGAGGCGTTAGCTGTAACAGTTGTTTTGCCT
GTGCAACAGCAGCAGGCTGTTGTGAGGGTGGAACAGTAGTGCTCGAAGCT
CTCGTTGTCTTCTCTTAGACAAAACGAGGTACATACGTGTTTGAGGGCAT
CTTCTATGCACGACTTTACGTTTGTACGGTCGGAAGGATATATCGTTGAC
ATTTTAGAGAGGTAGGGATCACAGTCCATTGAGAACCGAGAAAGTCTGTG
CTACGCACGCGTGGCCTGCAGGAAACTATAGTTTGCTCGTTTTCATCTTC
AACTTCTTCTATATCTCGTGCCTCATTATTTCTTGCGCGCCAGCGTATGG
GGAAAGTCAGGAGCACCCCCCCCCCCAAGGTCCAGGGCATAAATCCCAAG
TACAGCAGTACCTCCTTCTGTGTTCGATCTCGAACGCTGCGCGCCTCAGG
AGACCATGCTTTGAGAATCCTGCTTTAACACTTCGAGAACACGAGTCAAT
GTTGGCTCGCGCTGTGCGATTCCTCTATCCCTCGTGACCGAAGGGAAGGA
AGTCTATGGGCATAAGCCCTCTACTTGGAACGGCACGGTGAGTTTCAAAC
CCATTCTGAATGTACTTGTGTCCCGGGCTACGCATTCCGCACACGCTCCA
TGTTGCTGTCTAGCCATGGCCGGCGATCTATTCATTGACCATCTGCCGGT
GTGCCGACGAGATAATAAGGGTCCAGGTCATGATCTACTTGTCTTGGCTC
TTTTCTTGCTGTTTATGCATGTTGACGCAGGGGTTATTGATACCTCTACC
CCCCCCGTGCTAATATTCCTCAATATCTCGCGTGTATGTACACAGACATC
AGCACCTAACTACGTCCTTTTGTCATGAGAGAAACGGGCAACGTCGTTCG
TTGGCTCACCGAATGTTCTGACCCCTGATCGGCTACTCAAATTACTCTTC
TTCCTCTCGCGCGAGCCATCACAGCAATTGCCACCACGCTACAGTATACG
TTTGCCCCCTCCTCCGCCCGAGCGGTCGGCCGCATTTTCGGCAGCAGCCT
CACCAACCAGCACATACAGTAGCGCCTTGCACTTAACTAATAACCTGGCA
GCACCATTGTATACAACAACATAAGTACTTGAGCATCATTTGTGAGCCCG
ATAAAGGACCTCTACACTCAAGTATTGAAGTCTTTTGTAGCTCAACCCTT
CAAACGAAGATCTCCAGCCAGCCAAAACCAGAGGACTAACTAGCGGGGGC
TAAGCTGTAGATGCCGAACCCTCCACGGTTTCTTGGCTCTCGGACTTGTG
GTCCCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2108910..2114465+

>mRNA_Ecto-sp6_S_contig10.626.1 ID=mRNA_Ecto-sp6_S_contig10.626.1|Name=mRNA_Ecto-sp6_S_contig10.626.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2108910..2114465+ (Ectocarpus species6 EcLAC_371)
ATGTTCTCCCGCGTAGTCTCCCTCATGGTGTGCATGCTGGCTGGCGCCGC
CGCTTTCATGGCGCCATCGGTGACCGTGCGATCTGTGTCGCGACCGACAA
ACAGCCTGTCCATGGCGGACGTTGCCTTCCCGGGAGGAAAGAAGGCCAAG
GCCAACGGAGGCGCCCCCCTGAAGACGGTGGCGCAGAAGGCGGGCTACAA
GGCAGCGTACGGCTGTGAGGAGGGCAAGTGCGGGACGTGCGAGCACAAGG
TGAACGGCAAAAAGGTCAGGCTGTGCATCGGCAAGCTTCCCGCCGGCGCC
GGCCCATTCACGTTCACCCAGTAA
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