mRNA_Ecto-sp6_S_contig10.623.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI) HSP 1 Score: 284 bits (726), Expect = 2.370e-91 Identity = 155/204 (75.98%), Postives = 171/204 (83.82%), Query Frame = 1
Query: 169 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTISTLGILTLFMAFWPPLLADFVVVSGASISFIVIIFVAVRITSFINHALSESSHLHQHAASSNEFYGEAKKNLWKQALALCSTGCAVILAIAVRHLTQFGRTTPIVSWTAEMLCGHAAAVLFMSLTQFHAAAPAMSSTATNHWNLITTMRSRSE 780
MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVS KHNIFLV+G LNAG ISTLG+ TLFM FWPPLL D V SG++I+ IVIIFVAVRITSFIN A+SE HAASSNEFY EAKKNLWKQALALCS GCAV +AIAVRHLTQFGR+TPI+ WTA+ LCGHAAA++F SLTQF AA P+MS ++ +LI TM S SE
Sbjct: 1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSE------HAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTQFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAA-PSMSRASSTRPSLIATMTSSSE 197
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: A0A6H5JMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK0_9PHAE) HSP 1 Score: 245 bits (626), Expect = 1.040e-76 Identity = 148/242 (61.16%), Postives = 160/242 (66.12%), Query Frame = 1
Query: 349 MAFWPPLLADFVVVSGASISFIVIIFVAVRITSFINHALSESSHLHQHAASSNEFYGEAKKNLWKQALALCSTGCAVILAIAVRHLTQFGRTTPIVSWTAEMLCGHAAAVLFMSLTQFHAAAPAMSSTATNHWNLITTMRSRSESLISSGAPEAVAGVVMLFLNWLRSCMLHPGSTKKSHPQSPPRQQYKEKQQEAINSLSSDLEDYEIVTCMVKSESVAEKIINHKVSSIGTNKSRVLPTL 1074
MAFWPPLLAD VVVSG+ I+ VI FVAVRITSFIN A+SE+ LCGHAAA LFMS TQFHAAAP+MSST TNH LITTMRSRS+ L+SSG P AVAGVV+ FLN LRSCM HPG TKKSHPQS PRQQ+KE+QQEAINSLSSDLEDYE+VTC KSE VAEKIINHKVSS+GTNKSRVLPTL
Sbjct: 1 MAFWPPLLADLVVVSGSCIAGTVIFFVAVRITSFINRAMSEA------------------------------------------------------------LCGHAAAFLFMSSTQFHAAAPSMSSTGTNHSTLITTMRSRSKHLMSSGVPGAVAGVVIPFLNRLRSCMFHPGRTKKSHPQSRPRQQHKEEQQEAINSLSSDLEDYEVVTCTAKSERVAEKIINHKVSSVGTNKSRVLPTL 182
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI) HSP 1 Score: 167 bits (422), Expect = 4.550e-44 Identity = 94/218 (43.12%), Postives = 133/218 (61.01%), Query Frame = 1
Query: 49 VFVVGHVFIGVVLAARAGREGYSFQDKGFAQVLYIVLLPSMLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTISTLGILTLFMAFWPPLLADFVVVSGASISFIVIIFVAVRITSFINHALSESSHLHQHAASSNEFYGEAKKNLWKQALALCSTGCAVILAIAVRHLTQFGRTTPIVSWTAEMLCGHAAAVLFMSLTQF 702
++ G ++ + L RAG GY D G +V YI+L P +F VAM+AE+W+ESLP Q+++P SFA L S ++F+VIG N G +S LG++T F WP AD +V G + +V+ FVA RIT+ IN A S + + SS FY +AK+N+W QA ALC GC +L IA++ LT GR+TPI+ T ++L GH A++F S T F
Sbjct: 9 LYAFGFGWMAIGLVIRAGDIGY--HDDGPLRVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATSTAMG-RPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSF 223
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE) HSP 1 Score: 127 bits (318), Expect = 4.330e-31 Identity = 78/194 (40.21%), Postives = 104/194 (53.61%), Query Frame = 1
Query: 73 IGVVLAARAGREGYSFQDKGFAQVLYIVLLPSMLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTISTLGILTLFMAFWPPLLADFVVVSGASISFIVIIFVAVRITSFINHALSESSHLHQHAASSNEFYGEAKKNLWKQALALCSTGCAVILAIAVRHLTQFGRTTPIVSWTAEM 654
+ + LA RAG GY D G QV YI+L P +F VAM+AE+W+ESLP Q+++P SFA L S ++F+VIG N G +S LG++T F WP AD VV G L + SS FY +AK+NLW QA AL GC +L IA++ LT GR+TPI+ T ++
Sbjct: 1 MAIGLAVRAGDIGY--HDDGPLQVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGGI---------------------------LTAGSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.280e-10 Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 94 RAGREGYSFQDKGFAQVLYIVLLPSMLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTISTLGILTLFMAFWPPLLAD 378
R G+ G D+G QV Y VL P F + +A FW+ LP QL+ S+A L S + NI LV+G LNA T+S GILT+ + + AD
Sbjct: 2 REGKTG--LYDEGLMQVEYAVLFPCNTFAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAAD 94
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Match: D8LSN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 5.940e-6 Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1
Query: 139 QVLYIVLLPSMLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTISTLGILTLFMAFWPPLLADFVVVSGASISFIVIIFVAVRITSFINHALSESSHLHQHAASSNEFYGEAKKNLWKQALA-LCSTGCAVILAIAVRHLTQFGRTTPIVSWTAEMLCGH 666
Q Y V LP ++FG+ ++ +FW++SLP L+ SF ++ K N+F + +IS +G + A WP D ++V GA + + +A +I I+ A ++SS + S+ FY + K + KQ G AIA + T GR T I+ ++ + H
Sbjct: 24 QTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIGCIDDARAKSS-----SQSAKVFYDKTKAGILKQIAGYFVLAGANASSAIAFTY-TATGRATAIIPFSIYVRVSH 194 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig10.623.1 >prot_Ecto-sp6_S_contig10.623.1 ID=prot_Ecto-sp6_S_contig10.623.1|Name=mRNA_Ecto-sp6_S_contig10.623.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=304bp MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSHKHNIFLVIGFLNAGTback to top mRNA from alignment at Ecto-sp6_S_contig10:2068611..2072871- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig10.623.1 ID=mRNA_Ecto-sp6_S_contig10.623.1|Name=mRNA_Ecto-sp6_S_contig10.623.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4261bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2068611..2072871- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:2068611..2072871- >mRNA_Ecto-sp6_S_contig10.623.1 ID=mRNA_Ecto-sp6_S_contig10.623.1|Name=mRNA_Ecto-sp6_S_contig10.623.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:2068611..2072871- (Ectocarpus species6 EcLAC_371)back to top |