mRNA_Ecto-sp6_S_contig10.574.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.574.1
Unique NamemRNA_Ecto-sp6_S_contig10.574.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 376 bits (965), Expect = 2.430e-131
Identity = 195/204 (95.59%), Postives = 199/204 (97.55%), Query Frame = 1
Query:    1 MSFISLLFPYIPWTKHGRRKVAVEASYTLRSQSASSAGGTVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVENTTRRSVM 612
            MSFIS LFPYIPWTKH R KVAVEASYTLRSQSASSAGGTVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKF+TAG DPESAAVAVN+CE NPNFEQFAAIVDKYIREGSPFEVNIESKIRN+ILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVENTTRRSV+
Sbjct:    1 MSFISSLFPYIPWTKHERSKVAVEASYTLRSQSASSAGGTVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVENTTRRSVV 204          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 3.070e-103
Identity = 165/204 (80.88%), Postives = 178/204 (87.25%), Query Frame = 1
Query:    1 MSFISLLFPYIPWTKHGRRKVAVEASYTLRSQSASSAGGTVLDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVENTTRRSVM 612
            + FISLLFPYIPWTKHG RKVAVEASYTLRSQ+ASSAGGTVLDLIIQFPPLFQA      +    ESLMFLVDADEFN +LHAVSKFT+AG DP  AA+ V +CE+N NFEQFAAIVDKYIREGSPFEVNIESKIR++ILREVDRASF RL LD+K HLL+KATKQVSNMLRENLY KFRETEQFKQIQEQLFSVE   RRSV+
Sbjct:   98 VGFISLLFPYIPWTKHGSRKVAVEASYTLRSQAASSAGGTVLDLIIQFPPLFQACLSPVSDCAFVESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLRENLYLKFRETEQFKQIQEQLFSVEQAARRSVV 301          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 8.190e-37
Identity = 84/193 (43.52%), Postives = 116/193 (60.10%), Query Frame = 1
Query:   19 LFPYIPWTKHGRRKVAVEASYTLRSQSASSAGGTV-----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFS 582
            LFPY+PW KHG       A   + + S   +  TV     ++ I++ P L +AFEE+CR ALCSES++FL  A  FN +++A    +TA  D               NF  F  I DKYI++GSPFE+NIESK ++ I++  D+ +F++L LDD    L+ A K+V  ML+ENLY KFR+T+QFKQI   LFS
Sbjct:  258 LFPYVPWRKHGGTVAIDSAECMVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVYA----STANEDT--------------NFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKENLYDKFRQTDQFKQITGVLFS 432          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.250e-34
Identity = 84/199 (42.21%), Postives = 120/199 (60.30%), Query Frame = 1
Query:   10 ISLLFPYIPWT-KHGRRKVAVEASYTLRSQSASSAGGTV-----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVE 588
            I+ LFPY+PWT + G   + V     + ++ +SS   +V     L+ I++FPPL +AF E+CR ALCSESLMFL    +F+ +L A                  +  + +  F +F  IVD+YIR+GS FEVNIESK +  IL     +SF+ L LDD   +L+ A K++  ML+ENLY+KFR TEQFK+I++ L+S E
Sbjct:  309 IASLFPYVPWTTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDA------------------SDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQENLYNKFRSTEQFKEIKDMLYSAE 489          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.600e-27
Identity = 66/193 (34.20%), Postives = 109/193 (56.48%), Query Frame = 1
Query:   22 FPYIPWTKHGRRKVAVEASYTLRSQSASSAGGTV----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVE 588
            FPY+PW +    KVAV  + T+     S    T+    L+ II  PPL +AF+ +C+ ALC ES++ L +   F  +++AV                  + +D+  F++F AIV+K+I+ GS +EVNI+ + R  ++R+VD A F+ L+ D +  +   A  Q S ML +NL  KF+ TE++++I E L +++
Sbjct:  350 FPYVPWRRSASGKVAVGMNETMHVTCTSRPLSTIQLGRLETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAV------------------EADDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADNLLAKFQATERYQRIAEGLLAID 524          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.620e-20
Identity = 60/156 (38.46%), Postives = 84/156 (53.85%), Query Frame = 1
Query:   10 ISLLFPYIPWTKHGRRKVAVEA---SYTLRSQSASSAGGTV-----LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERL 453
            I+ L PYIPW +     VAV+A    +T R  S  +   +V     L+ I+ F PL +AFEE+C+ ALC ESLMFL     F  ++HA                  +   D+ NF     IV KY++ GSPFEVNI+SK +++IL ++ R +F RL
Sbjct:   31 IASLLPYIPW-REDASIVAVDAVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHA------------------STASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRL 167          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-11
Identity = 45/142 (31.69%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  133 IIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFK 558
            I+ + PL +AF E+C+ +LC ES  FL DA EF      + +    G+   SA                AA+V++YI++G+P E+NI S I++DI+      +F  L+ D +  +  KA +++  +L +NL  +F  + Q+K
Sbjct:   47 IMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRG---VIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYK 185          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.190e-11
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  133 IIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFK 558
            I+ + PL +AF E+C+ +LCSES  FL+DA EF   +           D   +A   N+          A +V++YI++G+P E+NI S  ++DI+      +F  L+ D ++ +  KA +++  +L +NL  +F  + Q+K
Sbjct:  197 IMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVE----GPVDGDANGSAEEENEAPTR-RLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYK 333          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.520e-10
Identity = 43/143 (30.07%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  133 IIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPN-FEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFK 558
            I+ + PL +AF E+C+ +LCSES  FL+DA EF   +           D   +A   N+   + +     A +V++YI++G+P E+NI S  + DI+      +F  L+ D +  +  +A +++  +L +NL  +F  + Q+K
Sbjct:  298 IMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVE----GPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYK 436          
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.710e-9
Identity = 43/142 (30.28%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  133 IIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVAVNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFERLNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFK 558
            I+ + PL +AF E+C+ + CSE   FL+DA EF   +        A    E    A  +          AA+V++YI++G+P E+NI S  ++DI+      +F  L+ D +  +  KA +++  +L +NL  +F  + Q+K
Sbjct:  151 IMNYLPLREAFGEFCQKSFCSE---FLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTS---GLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYK 286          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FN97_ECTSI2.430e-13195.59RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE3.070e-10380.88RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LLA9_ECTSI8.190e-3743.52RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE1.250e-3442.21RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI2.600e-2734.20RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6R2_9PHAE9.620e-2038.46RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3E2_ECTSI1.120e-1131.69RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J8W8_9PHAE1.190e-1130.99RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIZ3_9PHAE3.520e-1030.07RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P5_ECTSI4.710e-930.28RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1607855..1609847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score381.3
Seed ortholog evalue2.8e-103
Seed eggNOG ortholog2880.D7FN97
Model size615
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-15_003480.1
Cds size615
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348709.8118026-CDS-Ecto-sp6_S_contig10:1607854..16080101682348709.8118026-CDS-Ecto-sp6_S_contig10:1607854..1608010Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1607855..1608010 -
1682348709.8207185-CDS-Ecto-sp6_S_contig10:1608292..16085531682348709.8207185-CDS-Ecto-sp6_S_contig10:1608292..1608553Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1608293..1608553 -
1682348709.828082-CDS-Ecto-sp6_S_contig10:1608814..16088531682348709.828082-CDS-Ecto-sp6_S_contig10:1608814..1608853Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1608815..1608853 -
1682348709.8354132-CDS-Ecto-sp6_S_contig10:1609688..16098471682348709.8354132-CDS-Ecto-sp6_S_contig10:1609688..1609847Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1609689..1609847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.574.1prot_Ecto-sp6_S_contig10.574.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1607855..1609847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.574.1

>prot_Ecto-sp6_S_contig10.574.1 ID=prot_Ecto-sp6_S_contig10.574.1|Name=mRNA_Ecto-sp6_S_contig10.574.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=205bp
MSFISLLFPYIPWTKHGRRKVAVEASYTLRSQSASSAGGTVLDLIIQFPP
LFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFTTAGNDPESAAVA
VNKCEDNPNFEQFAAIVDKYIREGSPFEVNIESKIRNDILREVDRASFER
LNLDDKEHLLEKATKQVSNMLRENLYHKFRETEQFKQIQEQLFSVENTTR
RSVM*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1607855..1609847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.574.1 ID=mRNA_Ecto-sp6_S_contig10.574.1|Name=mRNA_Ecto-sp6_S_contig10.574.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1993bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1607855..1609847- (Ectocarpus species6 EcLAC_371)
ATGAGTTTCATCTCGCTACTCTTCCCGTACATCCCGTGGACGAAGCACGG GAGAAGAAAAGTTGCAGTCGAGGCCAGTTACACCTTGCGGTCCCAATCCG CCAGCTCTGCGGGTGGGACCGTGCTGGATCTGATCATCCAATTCCCACCA TTATTCCAGGTATGTTTTATCACTTGTGTTTGACGGCGCCTTCGTGTCTA TTGCCTGAACGAAGCCCGGGTTTGCGTTGCAGGAGATTTCCTTCTGAGCA TATTAAAACTGAGAGCTATGTAGCACTGATATCCCCTTGTAGCTTAGCTG GAGGACGACACAGCAGCAGGTCGTAGCAAATTATTCCTGGTTGAAGCAGT GCCGCTGTAGAGTTTAAAGAGTAACCAATGGTTCGAGTCAATATCGGATA AGTTCTAGCGGAAGCAGCAGCAACTGTATCTGCAGCGACGCGAAGCACGT AGCTGGAACTGTGATGGTCTGCTTCCATGCCCGGCCAGTTAGGACTTTGA TTGGTTCCCAAAGACTCCATACTCCATACTGTGGTGAAGACGGACATCGA AGGTCACGCAAAAACCGCCATTTGTTGCTTGAGCTTCTGGTTTCGAGGTG CGGCACAAGCACGCACCCTCCCCTTGCGTGCAATCCTCCTCTCACCATCT AAGCAAAATACCTAGGGTCAGCCGGTAGAAATGCCTTTCGTATCTACCTT TCCCAAGGCTCACCGAGCTGCAAAGGACCCTATCGTGTACATGACGCTGC TTGTGCGGTGCGCAGCAACCTACCGACAATGGTTTGCAAGTGCCGCTGTC TGCCAGCGATCCGCCAAGACATACGCACCAAATTCATTGCCAAACAACAA CGAAATTTTCGCAAGCCCGATTTGCTCCGTCTCCTACAAAATCGCATTGT GATCGTGATCGATTGTGCCCTTGCTTTGACCGTGCGCTCAAAGTCCATAA CCATCCGCCCATGCCTCAACCGAATGCGTCTCTTCCATTCTCAGGCGTTT GAAGAGTACTGCCGCAACGCCTTGTGCAGCGAGGTGAGTATCGTGCCTAG ACGCCGTGAGCCGCGTGACAAAAAGCTTGCATCGGCGTTCTCTTCATGCT CATTTTCCGTAGGGAATAATCTACCCATCACGCCCCCAAGGACGAAACTG GGTGTGGCTAGCCACCTACGTCGGTCAAGTACAAGTCAATCCCTAGAAAT CACTCAATGTCCCCAAGACAGATTTTATTTCCCGGATACCCTTCCCCTCT GCCGCAATGCTTGTTTGCTTCGCTGGTTATTGCACAATGCTCAGTCGCTC ATGTTTCTGGTGGACGCGGACGAGTTCAACTCTGCTCTTCATGCCGTGTC CAAATTTACTACTGCTGGCAACGACCCTGAGTCTGCAGCAGTGGCTGTCA ACAAGTGCGAGGACAACCCCAATTTCGAGCAGTTCGCCGCCATAGTAGAC AAATACATCCGGGAGGGTTCTCCGTTCGAAGTGAACATCGAGAGCAAAAT CAGAAACGATATTCTCAGGGAGGTGGACCGTGCGAGCTTCGAACGCCTCA ATCTGGTGAGTCCAGTATTCTTGCAGCCAGTTTCGTTCCCTTCGTTGATT ATCTAATACGGCCTGCCTCATACAAACGATTCGGGGTGGGGAATAGAACA CTTACCGATTTTTTCTCTCGACAATCGGAACTGAAGGATGGGGGTAGTGC TCTCTGCAGCCAGGTATACCCAGCAACAACGACAACGAACGCCTGGGGAG GAAGCACACCTGGCTCGGAATGCAATGCCCGTTTTCTTGTGACCTTGCCC GTCGCGTGGTGCGTTCTACTGCTTCATCGGGTTCCAGGATGACAAAGAGC ACCTTCTGGAAAAAGCGACGAAACAAGTCAGCAACATGCTAAGGGAAAAT CTCTATCACAAGTTTAGAGAAACAGAGCAGTTCAAGCAGATTCAAGAACA ACTCTTCTCGGTGGAAAATACAACTCGAAGGAGCGTAATGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1607855..1609847-

>mRNA_Ecto-sp6_S_contig10.574.1 ID=mRNA_Ecto-sp6_S_contig10.574.1|Name=mRNA_Ecto-sp6_S_contig10.574.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1607855..1609847- (Ectocarpus species6 EcLAC_371)
ATGAGTTTCATCTCGCTACTCTTCCCGTACATCCCGTGGACGAAGCACGG
GAGAAGAAAAGTTGCAGTCGAGGCCAGTTACACCTTGCGGTCCCAATCCG
CCAGCTCTGCGGGTGGGACCGTGCTGGATCTGATCATCCAATTCCCACCA
TTATTCCAGGCGTTTGAAGAGTACTGCCGCAACGCCTTGTGCAGCGAGTC
GCTCATGTTTCTGGTGGACGCGGACGAGTTCAACTCTGCTCTTCATGCCG
TGTCCAAATTTACTACTGCTGGCAACGACCCTGAGTCTGCAGCAGTGGCT
GTCAACAAGTGCGAGGACAACCCCAATTTCGAGCAGTTCGCCGCCATAGT
AGACAAATACATCCGGGAGGGTTCTCCGTTCGAAGTGAACATCGAGAGCA
AAATCAGAAACGATATTCTCAGGGAGGTGGACCGTGCGAGCTTCGAACGC
CTCAATCTGGATGACAAAGAGCACCTTCTGGAAAAAGCGACGAAACAAGT
CAGCAACATGCTAAGGGAAAATCTCTATCACAAGTTTAGAGAAACAGAGC
AGTTCAAGCAGATTCAAGAACAACTCTTCTCGGTGGAAAATACAACTCGA
AGGAGCGTAATGTGA
back to top