mRNA_Ecto-sp6_S_contig10.552.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.552.1
Unique NamemRNA_Ecto-sp6_S_contig10.552.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 1.010e-93
Identity = 188/202 (93.07%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:    1 MGLVGLTVHPAAETVAAVDKDGGCRSPETISRTALQGGAPKKXXXXXXXXXXXXXXXXXXXXXXXSPWSISKKLLEERARKAEYKAGRELVSKMSRKDSARRVQPKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAIARSAATSAATTTTGAASTATIAPTSFLRNV 606
            MGLVGLTVHPAA TVAAVDKDGGC+SPETISRTALQG A KK  XXXXXXXXXXXXXXXXXXXXXSPWSISKKLLEERARKAEYKAGRELVSKMSRKDSAR   PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAIARSAATSAA    GAA TATIAPTSFLRNV
Sbjct:  260 MGLVGLTVHPAAGTVAAVDKDGGCQSPETISRTALQGEASKKSAXXXXXXXXXXXXXXXXXXXXXSPWSISKKLLEERARKAEYKAGRELVSKMSRKDSAR---PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAIARSAATSAAXXXXGAAPTATIAPTSFLRNV 458
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BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: V5FZU4_BYSSN (Nucleosome binding protein n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5FZU4_BYSSN)

HSP 1 Score: 60.1 bits (144), Expect = 1.700e-8
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  313 PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQ 504
            PK   S+Y+ F  E+  S +   PG+S   +   +GE W+ LSDE + PY +KA+AD+KRYED+
Sbjct:   26 PKRGLSAYMFFANEQRESVREQNPGISFGQVGKVLGERWKALSDEERRPYEEKAQADKKRYEDE 89
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BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: A0A8H7VAX4_9FUNG (HMG box domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7VAX4_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 2.930e-8
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  271 VSKMSRKDSARRVQPKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAI 516
              K ++KD +    PK   S+Y+ F  ++ A+ K   P  +   I   +GE W+ +SD+ K PY KKAEAD+KRYED+  A+
Sbjct:   19 TKKRTKKDPS---APKRGLSAYMFFSQDQRATVKEESPDATFGQIGKLLGEKWKNMSDDEKKPYVKKAEADKKRYEDEKAAL 97
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BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: A0A168Q5V9_MUCCL (HMG box domain-containing protein n=5 Tax=Mucor TaxID=4830 RepID=A0A168Q5V9_MUCCL)

HSP 1 Score: 58.9 bits (141), Expect = 3.540e-8
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:  271 VSKMSRKDSARRVQ-----PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAI 516
            V K++++++ +R +     PK   S+Y+ F  +K A  K   P  S   +   +GE W+ +SDE K PY  KAEAD+KRYED+  A+
Sbjct:    5 VQKVTKRETKKRGKKDPNAPKRGLSAYMFFSQDKRAQVKEENPEASFGTLGKLLGEKWKAMSDEEKKPYIDKAEADKKRYEDEKAAL 91
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: A0A0F4YSN3_TALEM (Nonhistone chromosomal protein 6B n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YSN3_TALEM)

HSP 1 Score: 58.5 bits (140), Expect = 7.060e-8
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  313 PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQ 504
            PK   S+Y+ F  E+  + +   PG+S   +   +GE W+ LSDE + PY +KA+AD+KRYED+
Sbjct:   25 PKRGLSAYMFFANEQREAVREQNPGISFGQVGKILGERWKALSDEERRPYEEKAQADKKRYEDE 88
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: K8EPY9_9CHLO (Nucleosome binding protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPY9_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 7.240e-8
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:  313 PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYE 498
            PK   S+Y  F  ++ A    A P M +T++   +GE WR +SD  K+PY KKA+AD+ RYE
Sbjct:   24 PKRNLSAYFFFMNDQRAKVVKANPDMKVTEVGKKLGELWRAMSDSEKVPYNKKADADKVRYE 85
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BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: A0A8H7BXE0_9FUNG (Non-histone chromosomal protein 6 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BXE0_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.440e-7
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:  313 PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAI 516
            PK   S+Y+ F  EK    K   P  +   I   +GE W+ ++DE K PY +KAEAD+KRYED+  A+
Sbjct:   30 PKRGLSAYMFFSQEKRQEVKDENPEATFGQIGKILGEKWKGMTDEQKKPYVEKAEADKKRYEDEKAAV 97
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: A0A168PS98_MUCCL (HMG box domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168PS98_MUCCL)

HSP 1 Score: 57.4 bits (137), Expect = 1.590e-7
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  313 PKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQ 504
            PK   S+Y+ F  ++  + K   P  +   I   +GE W+ +SDE K PY KKAEAD+KRYED+
Sbjct:   31 PKRGLSAYMFFSQDQRTTVKDENPEATFGQIGKLLGEKWKNMSDEEKKPYVKKAEADKKRYEDE 94
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: NHP6_CANAL (Non-histone chromosomal protein 6 n=6 Tax=Candida/Lodderomyces clade TaxID=1535325 RepID=NHP6_CANAL)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-7
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:  286 RKDSARRVQPKGPQ---SSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQ 504
            +K S ++  P  P+   S+Y+ F  E     +A  PG+S   +   +GE W+ L+ E KLPY  KAEAD+KRYE +
Sbjct:    7 KKSSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKALNSEDKLPYENKAEADKKRYEKE 82
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Match: G8BIJ5_CANPC (HMG box domain-containing protein n=2 Tax=Candida TaxID=1535326 RepID=G8BIJ5_CANPC)

HSP 1 Score: 57.0 bits (136), Expect = 1.920e-7
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  286 RKDSARRVQPKGPQ---SSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQ 504
            RK S ++  P  P+   S+Y+ F  E     +A  PG+S   +  A+G+ W+ LS E K+PY  KAEAD+KRYE +
Sbjct:    8 RKVSRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKALGDKWKALSAEDKVPYENKAEADKKRYEKE 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN78_ECTSI1.010e-9393.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
V5FZU4_BYSSN1.700e-843.75Nucleosome binding protein n=2 Tax=Byssochlamys sp... [more]
A0A8H7VAX4_9FUNG2.930e-839.02HMG box domain-containing protein n=1 Tax=Mucor pl... [more]
A0A168Q5V9_MUCCL3.540e-837.93HMG box domain-containing protein n=5 Tax=Mucor Ta... [more]
A0A0F4YSN3_TALEM7.060e-842.19Nonhistone chromosomal protein 6B n=1 Tax=Rasamson... [more]
K8EPY9_9CHLO7.240e-843.55Nucleosome binding protein n=1 Tax=Bathycoccus pra... [more]
A0A8H7BXE0_9FUNG1.440e-742.65Non-histone chromosomal protein 6 n=1 Tax=Apophyso... [more]
A0A168PS98_MUCCL1.590e-743.75HMG box domain-containing protein n=4 Tax=Mucor Ta... [more]
NHP6_CANAL1.870e-739.47Non-histone chromosomal protein 6 n=6 Tax=Candida/... [more]
G8BIJ5_CANPC1.920e-740.79HMG box domain-containing protein n=2 Tax=Candida ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1372324..1374371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score292.7
Seed ortholog evalue1.3e-76
Seed eggNOG ortholog2880.D7FN78
Model size609
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.high mobility group
EggNOG OGs2EXFV@1,2SZ4V@2759
Cds size609
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348707.4998825-CDS-Ecto-sp6_S_contig10:1372323..13724071682348707.4998825-CDS-Ecto-sp6_S_contig10:1372323..1372407Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1372324..1372407 +
1682348707.5130675-CDS-Ecto-sp6_S_contig10:1372877..13731041682348707.5130675-CDS-Ecto-sp6_S_contig10:1372877..1373104Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1372878..1373104 +
1682348707.5330226-CDS-Ecto-sp6_S_contig10:1373649..13737371682348707.5330226-CDS-Ecto-sp6_S_contig10:1373649..1373737Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1373650..1373737 +
1682348707.5511568-CDS-Ecto-sp6_S_contig10:1374161..13743711682348707.5511568-CDS-Ecto-sp6_S_contig10:1374161..1374371Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1374162..1374371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.552.1prot_Ecto-sp6_S_contig10.552.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1372324..1374371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.552.1

>prot_Ecto-sp6_S_contig10.552.1 ID=prot_Ecto-sp6_S_contig10.552.1|Name=mRNA_Ecto-sp6_S_contig10.552.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=203bp
MGLVGLTVHPAAETVAAVDKDGGCRSPETISRTALQGGAPKKSSAGEKRK
TSSLSSSSTSAAAAASPWSISKKLLEERARKAEYKAGRELVSKMSRKDSA
RRVQPKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEM
KLPYTKKAEADRKRYEDQLRAIARSAATSAATTTTGAASTATIAPTSFLR
NV*
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mRNA from alignment at Ecto-sp6_S_contig10:1372324..1374371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.552.1 ID=mRNA_Ecto-sp6_S_contig10.552.1|Name=mRNA_Ecto-sp6_S_contig10.552.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2048bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1372324..1374371+ (Ectocarpus species6 EcLAC_371)
ATGGGCCTGGTCGGACTCACCGTCCACCCAGCGGCGGAGACGGTGGCAGC
TGTTGACAAGGATGGAGGTTGCCGGTCGCCCGAGGTACGCATAAGTCCTG
TATCGCCACAAGAATATTGAGTAGTCTTCCACAGTGCTTTGGTGAAAGAA
GAACCTCGCACCCCCGTTGACGAAGCCCAACTTCAGGGTCGTTCACCCTC
CTCTCGCCCACATTGCGCAAGGAATCGCCGTTGATTTCGTTTGATCCTGG
CCCCGTTAGGATCACTGATGCACTAACCCTGGCAACAACGGCAATCGCAT
CCTAGGGTAGCGCCTTTTCAAGCTGTTTAGCCCCCGAACGTGCAAACCCG
GTTCCCCACCGGGTTCGACTACTAATTTCCTCTTGCCAAACCTACACTAG
TGAGCAGTTGAAGCCCTTGGGACGAGAAGGAACTACCAAGCATCAACTCC
AACTCCGTGCCCCTTCTCGAAGCCTTAACTACCCTTGTTCTTGCTCCTTT
CATCGTAATCTCTAAATTCCCTGCTCGGTTATCGTATCGCTGGCGGCATC
TCAGACCATCTCGCGGACCGCCCTCCAAGGAGGAGCACCGAAGAAGAGCT
CCGCCGGCGAGAAACGGAAAACCTCTTCCTTGTCGTCGTCTTCCACTTCC
GCCGCCGCTGCCGCTTCTCCTTGGTCGATCTCCAAGAAACTGCTCGAGGA
GCGGGCTCGAAAGGCGGAGTACAAGGCTGGGAGGGAGCTGGTGTCCAAGA
TGTCCAGGAAAGACTCTGCCAGGCGGGTACAGTTGTAGTAGACCGGGGAC
ACGTTGATTCGTTCGTTCCTCAGTGGGGGGCACGCAGCGTATCCTAGGTG
CATCACGCGCGTGCTTCAAAAGAGTTGTCGTGCACAGCGTATTGCTCGTT
TGCACCGTTGCTCCACCGTAACCGGTGCAGGGTAATCATAGCTGGAGTAG
ACGTGCAATGCGGTAGGTGGGTTTGATCAGCCGAAGAGGGGGGGATCGTG
GCGTGCACCATATATTCAGTCCCTCACCCCCCCCCCGCCCTTCCTTGGTA
GGCCTTTTCTGTCGAGAAACGTTTAAACTTGCCGGGTGTGATAGCCGATT
TCGAGGAAGTAATGTGCTTCACCCTGCGTCTGTGCGTACTCGATAAAGGG
TATCTTGGTGATGGATAGCCGACGATGCTTCTGTTTTCAGCGCTAATACG
TGTCCAAAGGCACAGGTTCCAAAATCTCCCACCCCGCTGCCGCCTCTATG
GTCATGAGCACACCCTACCGCATGTTCTTACATGGTTTCGTCCCATCCGT
GCGCCCACCTTGATTCACCCATGCAGGCCAAAGGGTCCTCAAAGTTCTTA
TATCGTGTTCTACACAGAGAAGATGGCCTCGTTCAAGGCGGCTAGGCCCG
GCATGAGCATTACGGTGATGTTTCCCTGGCGATTCACACCTCTATTACTT
CTACCGCTTAACTCGTCATTCTCTCTTCCGGTTTTATTGTGGCGAAGACT
TGAGAGCGCCGCGTAAACCTTCGCTCTGTGTGAGGCAAGTGTTCTACCGA
CGACTCAGAAGAAGTGGGTAGAAAACGGTAAGAAGGGTATTTCCGTGGCC
GCCACGCCCGCTACTTTACATTCACTCGGAGGGGGCCGACCGGTGATGGC
TTCAAAATGATGCAACAGTTTCCTCTGTTTTATCCGTTTCATTGTCGTTG
TAACTTGGGTGGGAAAACGCGAACGCTCCCGCCTTACAGACCAGTGGTAC
CGCTTGTTCTGTCGCTTCTACTACGCTTTGCGGTCGCGAGGCATTGAAGT
AGAAAAACTTGTATTCTTTGTTGATGCCCGCTGCACAGGACATAGCGACA
GCGGTCGGCGAGGCCTGGCGCAGGCTGTCCGATGAGATGAAGCTTCCCTA
CACGAAGAAGGCCGAGGCCGATCGCAAGCGCTACGAGGACCAGCTGCGTG
CCATCGCACGTAGTGCCGCTACCTCCGCCGCCACGACGACGACCGGCGCC
GCCTCCACTGCCACCATCGCCCCTACCTCGTTCCTTCGCAATGTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1372324..1374371+

>mRNA_Ecto-sp6_S_contig10.552.1 ID=mRNA_Ecto-sp6_S_contig10.552.1|Name=mRNA_Ecto-sp6_S_contig10.552.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1372324..1374371+ (Ectocarpus species6 EcLAC_371)
ATGGGCCTGGTCGGACTCACCGTCCACCCAGCGGCGGAGACGGTGGCAGC
TGTTGACAAGGATGGAGGTTGCCGGTCGCCCGAGACCATCTCGCGGACCG
CCCTCCAAGGAGGAGCACCGAAGAAGAGCTCCGCCGGCGAGAAACGGAAA
ACCTCTTCCTTGTCGTCGTCTTCCACTTCCGCCGCCGCTGCCGCTTCTCC
TTGGTCGATCTCCAAGAAACTGCTCGAGGAGCGGGCTCGAAAGGCGGAGT
ACAAGGCTGGGAGGGAGCTGGTGTCCAAGATGTCCAGGAAAGACTCTGCC
AGGCGGGTACAGCCAAAGGGTCCTCAAAGTTCTTATATCGTGTTCTACAC
AGAGAAGATGGCCTCGTTCAAGGCGGCTAGGCCCGGCATGAGCATTACGG
ACATAGCGACAGCGGTCGGCGAGGCCTGGCGCAGGCTGTCCGATGAGATG
AAGCTTCCCTACACGAAGAAGGCCGAGGCCGATCGCAAGCGCTACGAGGA
CCAGCTGCGTGCCATCGCACGTAGTGCCGCTACCTCCGCCGCCACGACGA
CGACCGGCGCCGCCTCCACTGCCACCATCGCCCCTACCTCGTTCCTTCGC
AATGTCTAA
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